BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	36,413	C→T	53.0%	V47I (GTC→ATC)	USA300HOU_0026 ←	IS431mec transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	36,413	0	C	T	53.0%	1.2 / 236.7	203	V47I (GTC→ATC)	USA300HOU_0026	IS431mec transposase
Reads supporting (aligned to +/- strand): ref base C (39/55); new base T (57/49); total (99/104)
Fisher's exact test for biased strand distribution p-value = 9.05e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 205 total aligned reads displayed.

ATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCA  >  CP000730/36274‑36550

aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAATCTTTTTTATGCTTATTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGAcc                                                                                                                                          <  1:374170/141‑1 (MQ=255)

 tGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCg                                                                                                                                         >  1:182176/1‑141 (MQ=255)

 tGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAAAGGTAGATCg                                                                                                                                         >  1:32571/1‑141 (MQ=255)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                                                                      <  2:372335/141‑1 (MQ=255)

     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCACCGGTAGATCGTTGa                                                                                                                                     >  2:108245/1‑141 (MQ=255)

     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGa                                                                                                                                     >  1:194928/1‑141 (MQ=255)

        atatAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatg                                                                                                                                  <  1:384140/141‑1 (MQ=18)

         tataAATGGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATTAATACGCCATTTGTAATAAGCTTTTTTATGTTTTTTCTTCCTAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga                                                                                                                                 <  2:51290/141‑1 (MQ=11)

         tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga                                                                                                                                 >  2:390374/1‑141 (MQ=255)

          ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgat                                                                                                                                <  2:349946/141‑1 (MQ=21)

           taAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATCAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgatg                                                                                                                               >  2:230086/1‑141 (MQ=21)

           taAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCAGATTCTTCAAACCACCGGCAGATCTGTGAataatg                                                                                                                               >  1:50953/1‑141 (MQ=11)

            aaaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAAtgatga                                                                                                                              >  1:219709/1‑141 (MQ=18)

             aaTAGCTCCTTTTTCCTTTTATTTTGATATACGTCTTATCAATACGTCATTTGTAATAAGCTTTGTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                                                             <  2:179023/141‑1 (MQ=11)

              aTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATCGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAAc                                                                                                                            <  2:199995/141‑1 (MQ=255)

                aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGt                                                                                                                          >  2:254168/1‑141 (MQ=255)

                 gCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGGAGACCGTTGAATGATGAACGtt                                                                                                                         >  1:82115/1‑141 (MQ=21)

                 gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAACATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGtt                                                                                                                         <  1:264108/141‑1 (MQ=255)

                  cTCCATTTTCCTTTTATCTTGATCTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGttt                                                                                                                        <  2:172714/141‑1 (MQ=11)

                   tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTAAGCTTTGTCTTCCAAATTTGATATAAAATTGGGGCATATTCAGGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                                                                                                                       >  2:197572/1‑141 (MQ=11)

                   tCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTa                                                                                                                       <  1:340498/141‑1 (MQ=255)

                    ccATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTac                                                                                                                      <  1:68272/141‑1 (MQ=255)

                     cATTTTCCTTTTATTTTGTTCTACGTCGCATCAATAAGTCATTTTTAGTAAGCTTTTTTGTGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTaca                                                                                                                     <  2:238523/141‑1 (MQ=11)

                      aTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac                                                                                                                    <  1:225570/141‑1 (MQ=21)

                      aTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTacac                                                                                                                    <  1:104762/141‑1 (MQ=255)

                      aTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTacac                                                                                                                    <  2:177429/141‑1 (MQ=255)

                       ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                                                   <  1:48715/141‑1 (MQ=18)

                       ttttCCTTTTATTTTGATATCCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                                                                                                                   <  2:311478/141‑1 (MQ=11)

                        tttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacca                                                                                                                  <  1:250331/141‑1 (MQ=18)

                        tttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATACGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacca                                                                                                                  <  1:30810/141‑1 (MQ=11)

                        tttCCTTTTATTTTGATATACGGCTCATCAATACGCCGTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCCAATTTGATATAAAATTGGCGCATGTTCTTGAACCGAACGGTGAATCGTTGAATGGTGAACGTTTAcaccc                                                                                                                  >  2:65178/1‑140 (MQ=11)

                          tCCTTTTATTTCGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg                                                                                                                <  1:113942/141‑1 (MQ=21)

                           ccTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAACTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGTCATATTGTTGAACGCAACAGTAGACCTTTGGATGATGGACGTTTAGACCACGt                                                                                                               >  2:302470/1‑141 (MQ=11)

                           ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGGATGATGAACGTTTACACCACGt                                                                                                               >  1:118701/1‑141 (MQ=255)

                            cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt                                                                                                              >  1:346943/1‑141 (MQ=25)

                            cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTAGGGCATATTCTTGAACCCAACGGTAGACAGTGAAATGATGAACGTTTACACCAAGtt                                                                                                              >  2:160843/1‑141 (MQ=11)

                            cTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt                                                                                                              >  1:141490/1‑141 (MQ=255)

                            cTTTTATTTTGATATACGTCTCATCAATACGCCATTAGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGACTGATGAACGTTTACACCACGtt                                                                                                              >  1:276415/1‑141 (MQ=11)

                             ttttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc                                                                                                             >  2:218007/1‑141 (MQ=255)

                              tttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTGTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGACGAACGTTTACACCACGTTct                                                                                                            >  1:294697/1‑140 (MQ=11)

                                tgttttTATATACGTCTGATCAATACGCCATTTGTAATAAGTTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCATATTCTTGAACCCAACGGTAGATCGGGGAATTATGAAAGTTTACACCACGTTctct                                                                                                          <  2:102962/139‑4 (MQ=11)

                                tagtttgagacaCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCTTTTAATGATGAACGTTTACACCACGTTctct                                                                                                          <  1:56558/130‑4 (MQ=11)

                                tATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTCTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt                                                                                                          <  1:303759/141‑1 (MQ=21)

                                 tttttGATGTTCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                         <  2:35368/140‑1 (MQ=21)

                                 tttttGATGTACGTCTCATCAATACGCCTTTTGTAATAAGCTTTTTTATGCCATTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                         <  1:288493/140‑1 (MQ=255)

                                 aTTTTGATGTACGTGTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                         <  2:169728/141‑1 (MQ=21)

                                  ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa                                                                                                        <  2:162852/141‑1 (MQ=21)

                                  ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa                                                                                                        <  2:286197/141‑1 (MQ=18)

                                   tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACTACTGAATGATGAACGTTTACACCACGTTCCCTTaa                                                                                                       <  1:192682/141‑1 (MQ=255)

                                   tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa                                                                                                       >  1:214834/1‑141 (MQ=25)

                                     tGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAata                                                                                                     <  2:33480/141‑1 (MQ=11)

                                      gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGCTATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAGTGGTGAACGTTTAAACCACGTCCCCTTActat                                                                                                    >  2:80190/1‑141 (MQ=11)

                                      gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                                                    >  1:69425/1‑141 (MQ=21)

                                         gTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGCATGATGAACGTTTCCACCCCGTTCCCTTAATCtttt                                                                                                 >  1:356129/1‑140 (MQ=255)

                                           aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg                                                                                               <  1:86283/141‑1 (MQ=255)

                                           aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAg                                                                                               <  1:163831/141‑1 (MQ=21)

                                            cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTCATCTTTCAGa                                                                                              >  2:378845/1‑141 (MQ=11)

                                            cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa                                                                                              >  1:223568/1‑141 (MQ=255)

                                             gTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGat                                                                                             <  2:225958/141‑1 (MQ=255)

                                              tctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCCCGTTCTCTTAATATTTCAGata                                                                                            >  2:298470/1‑141 (MQ=255)

                                              tctcATCAATACGCCATTTATAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATAGAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGata                                                                                            >  1:239291/1‑141 (MQ=255)

                                               ctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatat                                                                                           <  2:46284/141‑1 (MQ=255)

                                                 catcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                                                                                                                   >  1:18650/1‑115 (MQ=255)

                                                 catcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                                                                                                                   <  2:18650/115‑1 (MQ=255)

                                                 catcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatatat                                                                                         >  1:336597/1‑141 (MQ=255)

                                                  atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCCAGTTCTCTTAATATTTCAGATATATc                                                                                        >  2:392100/1‑141 (MQ=11)

                                                    caATACGCCATTTGTAATAAGCTTTTTTTTTTTTTTTTTTCCAAATTAAAAATAAAATTTGGGCACATACTTGAACCCAACGGTAGAGCGTTGACATACGAACGTTTACACCACCTACTATTAATCTTTCAGAAATATcct                                                                                      >  2:27199/1‑139 (MQ=255)

                                                    caATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCCCGATCTCTTAATATTTCATATATATCAc                                                                                      >  2:289858/1‑141 (MQ=11)

                                                    caATACGCCATTTGTAATAAACTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATCGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACATTCTCTTAATATTTCAGATATATCAc                                                                                      >  1:243280/1‑141 (MQ=11)

                                                     aaTACGCTATTTGTAATAAGATTTTTTATGCTTTTTCTTCCAAATTTGTTACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg                                                                                     <  1:172803/141‑1 (MQ=255)

                                                     aaTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATCTTTCTAATATATCAca                                                                                     >  2:210753/1‑140 (MQ=11)

                                                      aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                                                    >  1:128370/1‑141 (MQ=255)

                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt                                                                                   >  1:41653/1‑141 (MQ=255)

                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt                                                                                   >  1:134355/1‑141 (MQ=40)

                                                       tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt                                                                                   <  1:148591/141‑1 (MQ=40)

                                                       tACGCCATTGGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATCTTCTTGAACCCAACGGTAGATCGTTGAATGATGACCGTTTACACAACGTTCTCTTCATGTTTCGGGTCTATCActag                                                                                   >  2:312135/1‑138 (MQ=11)

                                                        aCGCCATTTGTAATAAGCTTTTTTTTTCGTTGTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATa                                                                                  >  2:85716/1‑141 (MQ=11)

                                                         cGCCATTTGTAATAAGATTTTGTCTGCTTTTTCTTCCAAATTTTATATCAAATTGGGGCATATTCTTGAACCCAACTGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATaa                                                                                 <  1:33245/141‑1 (MQ=11)

                                                           ccATTTGTAATAAGCTTTTTTATGGTTTTTCTTCCAAATTTGATATAAAATTGTTGCATATTCTTGAACCCCACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTATTAATATTTCCACTGTATCTCGATAGCt                                                                               >  2:134818/1‑141 (MQ=11)

                                                           ccATTTGTAATAAGCTTTTTTATGCTTTTTGTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGTTGAAAGTATACTCCTCGTTCTCTTAATATTTCAGATATATCACGATaggt                                                                               >  2:82804/1‑138 (MQ=11)

                                                           ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTTCAAATTTGATACAAAATTGGGGCATATTTTTGAACCCCACGGTAGACCGTTGCATGCTGAACGTTTACACCACGTTCCCTTAATGTTTCAGATGTATAACGAttcct                                                                               >  2:152181/1‑137 (MQ=14)

                                                            cATTTGTAATAAGCTTTTTTATGCTTTTTCTTTCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGACTGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTc                                                                              <  1:266514/141‑1 (MQ=255)

                                                            cATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTc                                                                              <  1:334411/141‑1 (MQ=18)

                                                            cATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGCTGAATGAGGAACTCTTGAACCAGGTTCCCTTAATATTTCAGATATATCACGATAACTc                                                                              <  1:94094/141‑1 (MQ=11)

                                                               ttGTAATAAGCTTTTTTATGCTTTTTTTTTTTTTTTTTATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATTTTTTATATATATCACTAtggcttaat                                                                           >  2:325071/1‑133 (MQ=11)

                                                               ttGTAATAAGCTTTTATATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACGCAACGGTAGATCGTTGAATAATGAACGTTTACACCACGTTATGTTAATATTTCAGGTAAATCACAATAACTCaaa                                                                           >  2:127527/1‑140 (MQ=11)

                                                               ttGTAATAAGCTTGTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAACGATGAACGTTTACACCACGTTCTCTTAATATTTCAGCTATATCACGATAGCTCAAt                                                                           <  2:1112/141‑1 (MQ=11)

                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca                                                                        <  1:143348/141‑3 (MQ=11)

                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGCCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGCACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATgca                                                                        <  1:99486/141‑3 (MQ=255)

                                                                  taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGta                                                                        >  2:38757/1‑141 (MQ=40)

                                                                   aataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgcat                                                                       <  2:120660/141‑4 (MQ=11)

                                                                   aataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGtat                                                                       >  2:264235/1‑141 (MQ=255)

                                                                                                     aTACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGAAGCCAACGGCTACAGTGATGAc                                     >  1:31455/1‑141 (MQ=21)

                                                                                                             ttGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGt                             <  1:39065/141‑1 (MQ=32)

                                                                                                                           cgAACCCAACGGTTGACCGTGGAATGAGGAACGTTTACACCACGATGCCATAATATTTCAGATATATCATAATAACTCAATGTATATCTTAGATAGTAGACAACGGCTACGGTGATAACATCCTTGTTAAAATGTTtataa               >  2:189242/2‑140 (MQ=11)

                                                                                                                                ccAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGaa          <  2:221418/141‑1 (MQ=32)

                                                                                                                                   aCGGTAGATCGTTGAATGATGAACGTTTACACCACGGTCTCTTAATATTTCAGATATATCACGATAACTCCATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATCACGCCTTTATTATATTTTTTATAACTGACATa       >  2:60503/1‑141 (MQ=11)

                                                                                                                                    cgttAGACCTTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAg      <  2:356129/138‑1 (MQ=17)

                                                                                                                                    cGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAg      <  2:158661/141‑1 (MQ=32)

                                                                                                                                      gTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGtt    <  1:230260/141‑1 (MQ=32)

ATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCA  >  CP000730/36274‑36550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`