New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	782414 =	20 (0.870)	4 (0.190)	4/240	NT	18.4%	intergenic (‑209/+133)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein
	?	CP000730	782453 =	17 (0.800)					intergenic (‑248/+94)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein

TTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAA  >  CP000730/782283‑782542                                                                                                                                    |                                                                                                                                  ttATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTc                                                                                                                          <  1:100079/141‑1 (MQ=255) agctcacgtcatcttcggcggcgctaaattaaaataatcaatttctgagttaaacttttatttacaacatactattactatacattacaaatttttaaaatatacattacactcattactaaatggaaagcGTATGATTTc                                                                                                                          <  1:123758‑M1/10‑1 (MQ=255)            ggAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgg                                                                                                               >  1:189380/1‑141 (MQ=255)                 tgtTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCCAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGc                                                                                                          <  1:154222/141‑1 (MQ=255)                      gAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCCCTAAAAAAATTTACTTATGTGCTCTGCAACCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGACAGTATGATTTCTACAAGCTAGGGGGGCTGT‑Ga                                                                                                    >  2:46309/1‑141 (MQ=255)                            aTGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCAt                                                                                              >  1:13050/1‑141 (MQ=255)                                    cTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTc                                                                                      <  1:265252/141‑1 (MQ=255)                                          tttctgagttaaacttttatttacaacatactattactatacattacaaatttttaaaatatacattacactcattactcaatggaaagcGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGa                                                                                <  2:6237‑M1/51‑1 (MQ=255)                                             aacaaacCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTGATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCAGTGAGTa                                                                             >  2:174821/1‑141 (MQ=255)                                               caaacCTCAAGCTCTAAAAGAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGCTTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAAt                                                                           >  1:143439/1‑141 (MQ=255)                                                                  aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTa                                                        <  1:50326/141‑1 (MQ=255)                                                                  aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTa                                                        <  1:113882/141‑1 (MQ=255)                                                                        aCTTATGTGCTCTTCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAtt                                                  <  1:69339/141‑1 (MQ=255)                                                                                   ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtatt                                       >  1:81846/1‑140 (MQ=255)                                                                                     ttacaaatttttaaaatatacattacactcattactcaatggaaagcGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                                     >  1:96179‑M1/48‑141 (MQ=255)                                                                                     ttacaaatttttaaaatatacattacactcattactcaatggaaagcGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                                     >  2:96179‑M1/48‑141 (MQ=255)                                                                                     gCAATCTTATGGGATTTAATAGTTGTCTATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATCTTTTAAAAATTTGTAATGTagagt                                     >  2:167868/1‑141 (MQ=255)                                                                                     gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                                     >  1:243866/1‑141 (MQ=255)                                                                                     gCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagt                                     >  2:182298/1‑141 (MQ=255)                                                                                         tCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatc                                 <  1:187691/141‑2 (MQ=255)                                                                                          cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGTAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCCTTGAGTAATGAGTGTAATGTATATTTTAAAAATTCGTAATGTatagtaatag                                >  1:115401/1‑141 (MQ=255)                                                                                              tGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCAATTGAGTAATGAGGGTAATGTCTATTTTAAAAATTTGTAATGAATGGTAATAGTAtg                            >  2:210375/1‑141 (MQ=255)                                                                                                     tAAGAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa                     <  1:170158/141‑1 (MQ=255)                                                                                                                  tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATTTTGTAAATAAAAGTTTAACt        >  2:170047/1‑141 (MQ=255)                                                                                                                        tcaatggaaagcGTATGATTCCTACAAGCTAGGTGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGaaa  >  1:6237‑M1/13‑141 (MQ=255)                                                                                                                                    |                                                                                                                                  TTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAA  >  CP000730/782283‑782542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.