| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,108,996 | T→C | 19.9% | L165L (TTA→CTA) | potA → | spermidine/putrescine ABC superfamily ATP binding cassette transporter, ABC protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,108,996 | 0 | T | C | 19.9% | 38.1 / 2.4 | 20 | L165L (TTA→CTA) | potA | spermidine/putrescine ABC superfamily ATP binding cassette transporter, ABC protein |
| Reads supporting (aligned to +/- strand): ref base T (7/9); new base C (2/2); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
TCAGGTTATGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGATG > CP000730/1108876‑1109134 | tCAGGTTATGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCCATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACt < 2:501/141‑1 (MQ=255) gTTATGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGaaa > 1:93354/1‑141 (MQ=255) gTTATGAAAAAAGAAATATTAATGAAATGACTAGCTGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAAGATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGACCTGata > 1:77407/1‑139 (MQ=255) aTGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCCACGTGTTGCAAATGCACGTGCGATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGc > 2:57004/1‑141 (MQ=255) aTGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCGGAAATATTATTGTTAGATGAAGCTTTATCCGCACTAGATTTGAAATTGCGTACTGAAATGc > 2:109275/1‑141 (MQ=255) aTGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCACTAGATTTGAAATTGCGTACTGAAATGc > 2:109280/1‑141 (MQ=255) gAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGATATTGCGTACTGAAATGCaa < 1:267522/141‑1 (MQ=255) atatTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTAc < 2:194392/141‑1 (MQ=255) atTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATGACga > 1:221982/1‑141 (MQ=255) aGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTACTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATACGCATTAGATTTGAAACTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAAACt > 2:103782/1‑141 (MQ=255) gTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTa < 2:200151/141‑1 (MQ=255) aCAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAgg < 1:252002/141‑1 (MQ=255) cAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGCACCAGATGTATTAGTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGt < 1:222111/141‑1 (MQ=255) gttttGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTta < 1:11738/138‑1 (MQ=255) ttAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGActtt > 1:259775/1‑141 (MQ=255) tCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTaaaa > 1:232223/1‑141 (MQ=255) cGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGa < 1:57004/141‑1 (MQ=255) cGCACTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGa < 1:109275/141‑1 (MQ=255) cGCACTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGa < 1:109280/141‑1 (MQ=255) cATTAGATTTGAAATTGCGGACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGATg < 1:71855/141‑1 (MQ=255) | TCAGGTTATGAAAAAAGAAATATTAATGAAATGAGTGGCGGACAAAAGCAACGTGTTGCAATTGCACGTGCTATCGTAAATGAACCAGAAATATTATTGTTAGATGAATCTTTATCCGCATTAGATTTGAAATTGCGTACTGAAATGCAATATGAATTACGAGAATTGCAATCTAGATTAGGTATTACATTTATATTTGTAACACATGATCAAGAAGAAGCGTTAGCATTAAGTGACTTTCTTTTTGTATTAAAAGATG > CP000730/1108876‑1109134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |