New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 266058191 (1.190)3 (0.040) 3/236 NT 3.3% intergenic (+23/+226) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase
?CP000730 = 2660590 92 (1.330)intergenic (+32/+217) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase

TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2660439‑2660581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA  <  CP000730/2660590‑2660453
                                                                                                                                                                                                                                                                                         
TTAGTAACACCACATACTGCTTTCTTCTCTGATGAAGCAATACAAAACCTTGTCGAAGGTGGTTTAAACGCCGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAG                                                                                                                                              <  1:243675/141‑1
  AGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACAGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC                                                                                                                                            <  1:604212/141‑1
                 TGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGTAACACTTTTAAATTAATATATATATTTAAAAGCAAAGGCACATGGCGCGCCTTT                                                                                                                             <  1:172629/141‑1
                                                                                                                TAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTG                              >  2:4951/1‑141
                                                                                                                           ATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCAT                   <  1:4951/141‑1
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTGCCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  1:246221/1‑141
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACGGATAATGCTGCGTTTAAACCACCTTCAACCAGGTTTTGTACTGCTTCATCAGAGAAa           >  1:350772/1‑140
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAca           >  2:445826/1‑139
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAAG           >  2:574098/1‑141
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  2:687373/1‑141
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  1:693246/1‑141
                                                                                                                                   AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTCCAACAAGGTGTTGAACTGCCTGATCAGGGAAG           >  1:188199/1‑141
                                                                                                                                       GCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTAAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAG       >  1:248050/1‑141
                                                                                                                                        CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC      >  2:53657/1‑141
                                                                                                                                        CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC      <  1:807682/141‑1
                                                                                                                                          AAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAA    <  1:94199/141‑1
                                                                                                                                           AGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAAT   <  2:540779/141‑1
                                                                                                                                            GGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATt  >  2:735040/1‑140
                                                                                                                                                                                                                                                                                         
TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2660439‑2660581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA  <  CP000730/2660590‑2660453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.