New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2660581	91 (1.190)	3 (0.040)	3/236	NT	3.3%	intergenic (+23/+226)	ddh/USA300HOU_2514	D‑lactate dehydrogenase/HAD superfamily hydrolase
	?	CP000730	= 2660590	92 (1.330)					intergenic (+32/+217)	ddh/USA300HOU_2514	D‑lactate dehydrogenase/HAD superfamily hydrolase

TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2660439‑2660581 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA  <  CP000730/2660590‑2660453                                                                                                                                                                                                                                                                                           TTAGTAACACCACATACTGCTTTCTTCTCTGATGAAGCAATACAAAACCTTGTCGAAGGTGGTTTAAACGCCGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAG                                                                                                                                              <  1:243675/141‑1   AGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACAGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC                                                                                                                                            <  1:604212/141‑1                  TGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGTAACACTTTTAAATTAATATATATATTTAAAAGCAAAGGCACATGGCGCGCCTTT                                                                                                                             <  1:172629/141‑1                                                                                                                 TAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTG                              >  2:4951/1‑141                                                                                                                            ATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCAT                   <  1:4951/141‑1                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTGCCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  1:246221/1‑141                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACGGATAATGCTGCGTTTAAACCACCTTCAACCAGGTTTTGTACTGCTTCATCAGAGAAa           >  1:350772/1‑140                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAca           >  2:445826/1‑139                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAAG           >  2:574098/1‑141                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  2:687373/1‑141                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG           >  1:693246/1‑141                                                                                                                                    AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTCCAACAAGGTGTTGAACTGCCTGATCAGGGAAG           >  1:188199/1‑141                                                                                                                                        GCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTAAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAG       >  1:248050/1‑141                                                                                                                                         CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC      >  2:53657/1‑141                                                                                                                                         CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC      <  1:807682/141‑1                                                                                                                                           AAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAA    <  1:94199/141‑1                                                                                                                                            AGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAAT   <  2:540779/141‑1                                                                                                                                             GGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATt  >  2:735040/1‑140                                                                                                                                                                                                                                                                                           TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2660439‑2660581 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA  <  CP000730/2660590‑2660453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.