Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 707,909 A→T 100% M1M (TTG→ATG) † USA300HOU_0653 ← ABC superfamily ATP binding cassette transporter, ABC protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730707,9090AT100.0% 259.4 / ‑6.5 86M1M (TTG→ATG) †USA300HOU_0653ABC superfamily ATP binding cassette transporter, ABC protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (46/38);  minor base C (0/1);  total (47/39)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AGACTTGATAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACAAACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTGAAGA  >  CP000730/707769‑708044
                                                                                                                                            |                                                                                                                                       
aGACTTGATAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACaa                                                                                                                                         >  2:35700/1‑141 (MQ=255)
      gATAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGttt                                                                                                                                   <  2:20876/141‑1 (MQ=255)
       aTAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTGTCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGtttt                                                                                                                                  >  1:159472/1‑140 (MQ=255)
       aTAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTta                                                                                                                                  <  1:384263/141‑1 (MQ=255)
         aaGGGAAGATTTACCAGCACCAGTCGGGCCCATGAAACCAATTATGTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTtata                                                                                                                                <  1:167801/141‑1 (MQ=255)
          aGGGAAGGTTTACCAGCACCATTCGGGCCCAAGCGATCAATCATATCCCCGCACAGCATGATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATAc                                                                                                                               >  2:642874/1‑141 (MQ=255)
          aGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTTTAACATACGCTTATAc                                                                                                                               >  2:7192/1‑141 (MQ=255)
          aGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATAc                                                                                                                               >  2:322197/1‑141 (MQ=255)
          aGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAAAATACGTTTATAc                                                                                                                               >  2:6166/1‑141 (MQ=255)
                gATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTa                                                                                                                         >  1:96938/1‑141 (MQ=255)
                gATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTa                                                                                                                         >  1:351464/1‑141 (MQ=255)
                gATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTa                                                                                                                         >  1:529021/1‑141 (MQ=255)
                   ttACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGGACTGGTATCGATAAGGAAAGGTTTTTAAGTACATGCTTATTACCTAAAACCAGGTTTAAATCTTTTGTTTCTAACGTACGTTTATACCACCTAAtt                                                                                                                      >  2:152103/1‑141 (MQ=255)
                    tACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTa                                                                                                                     >  2:241790/1‑141 (MQ=255)
                    tACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGAACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGAATAAAATCATTTCTTTCTAACATACCTCTATACCTCCTAATTa                                                                                                                     >  1:21807/1‑141 (MQ=255)
                          cACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTTACATACGTTTATACCTCCTAATTAAAAGta                                                                                                               >  1:107155/1‑140 (MQ=255)
                              aTTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTCAAAGTTTAgg                                                                                                           >  1:387048/1‑141 (MQ=255)
                              aTTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAgg                                                                                                           >  2:313695/1‑141 (MQ=255)
                               ttggggCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGc                                                                                                          <  1:335551/138‑1 (MQ=255)
                                tCGGGCCCATGATACCAATTATTTGGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCt                                                                                                         >  2:237974/1‑141 (MQ=255)
                                  gggCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGGTAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTaa                                                                                                       >  1:123449/1‑141 (MQ=255)
                                   ggCCCATGATACCAATTTCTTCGCCGCGTACTTGTATCAATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAACAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAAc                                                                                                      <  1:655947/141‑1 (MQ=255)
                                     cccATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCt                                                                                                    <  1:645588/141‑1 (MQ=255)
                                     cccATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCt                                                                                                    <  1:742583/141‑1 (MQ=255)
                                      ccATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCCCCTAATTAAAAGTTTAGGCTAAccca                                                                                                   >  2:378917/1‑139 (MQ=255)
                                       cATGATTACAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCtaa                                                                                                  <  1:193438/141‑1 (MQ=255)
                                        aTGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCtaat                                                                                                 >  1:510335/1‑141 (MQ=255)
                                           atacacattattTCGCAGCGTATTGGGAGCGGTAAGGAAATGTTTGTAAGTACATACTTATTACCTAAAAACAGATTTAAGTCTTTTGTTTCTAACATAAGTCTATACCTCCTAATTAAAAGTTATGGCTAACCtaattat                                                                                              >  2:307665/7‑140 (MQ=255)
                                             aCCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTaattaatt                                                                                            >  1:609753/1‑141 (MQ=255)
                                                  ttattTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGtata                                                                                       <  1:872021/141‑1 (MQ=255)
                                                  ttattTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGtata                                                                                       <  1:378508/141‑1 (MQ=255)
                                                  ttatgTCGGCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTATGCTAACCTAATTAATTGtata                                                                                       <  2:282145/141‑1 (MQ=255)
                                                       tCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATaaa                                                                                  <  2:559897/141‑1 (MQ=255)
                                                          ccgcGTATTTGTATCGAGAAGGAAATGTCTTTAATTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTg                                                                               <  2:187285/141‑1 (MQ=255)
                                                          ccgcGTACCGGAAACGATAACGAAATGTTTTTAAGTACATGCTTATTACCCAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTg                                                                               <  1:19570/141‑1 (MQ=255)
                                                             cgTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTgaga                                                                            <  2:529021/141‑1 (MQ=255)
                                                              gTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGaa                                                                           >  2:800313/1‑141 (MQ=255)
                                                                  tGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATAtt                                                                       <  1:564021/141‑1 (MQ=255)
                                                                  tGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATAtt                                                                       <  1:800313/141‑1 (MQ=255)
                                                                   ggTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATAttt                                                                      >  1:630811/1‑141 (MQ=255)
                                                                    gTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTa                                                                     <  2:462114/141‑1 (MQ=255)
                                                                            aaGGAAATGTTTTTGAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCa                                                             >  1:306830/1‑141 (MQ=255)
                                                                            aaGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCa                                                             >  1:463104/1‑141 (MQ=255)
                                                                            aaGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCa                                                             >  2:855179/1‑141 (MQ=255)
                                                                            aaGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCa                                                             >  2:914463/1‑141 (MQ=255)
                                                                              ggAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAg                                                           <  1:35700/141‑1 (MQ=255)
                                                                                aaaTGTATTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATCCGTTTAGACCCCCTAATTAAAATTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCTTGtaagata                                                         >  1:124186/1‑135 (MQ=255)
                                                                                  aTGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTaaa                                                       <  1:534363/141‑1 (MQ=255)
                                                                                  aTGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTaaa                                                       <  1:914127/141‑1 (MQ=255)
                                                                                  aTGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTaaa                                                       >  1:462197/1‑141 (MQ=255)
                                                                                   tGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAAt                                                      <  1:565784/141‑1 (MQ=255)
                                                                                      ttttAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCg                                                   >  2:840349/1‑141 (MQ=255)
                                                                                       tttAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGt                                                  <  2:96938/141‑1 (MQ=255)
                                                                                       tttAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGt                                                  <  2:351464/141‑1 (MQ=255)
                                                                                       tttAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATACGt                                                  >  2:295477/1‑141 (MQ=255)
                                                                                         tAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCTAGTAAATTCGTGa                                                >  1:239059/1‑141 (MQ=255)
                                                                                         tAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGa                                                >  1:50847/1‑141 (MQ=255)
                                                                                           aGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCGAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGata                                              <  1:592064/141‑1 (MQ=255)
                                                                                             tACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTCTCATGTCAAGTAAATTCGTGatata                                            >  1:784492/1‑141 (MQ=255)
                                                                                                 tGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTAGTGatataatat                                        >  2:565141/1‑141 (MQ=255)
                                                                                                 tGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTACAGTAAATTCGTGatataatat                                        >  2:65710/1‑141 (MQ=255)
                                                                                                  gCTTATTACCTAAAAACAGGTTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAACGTTTAGGCTAACCTAATTAATTGTATAATAATATGAGAATATTTAGCATGTCACGTAAATTAGTGttataacata                                       >  2:725932/1‑141 (MQ=255)
                                                                                                       ttaCCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGaaaa                                  >  2:733918/1‑141 (MQ=255)
                                                                                                       ttaCCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACaa                                  >  2:384430/1‑141 (MQ=255)
                                                                                                       ttaCCTAAAAACAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAAATGTATAATACACTGAGAATATTTATCATGCCAAGTACATTCGTTATACAATATAGACaa                                  <  2:763488/141‑1 (MQ=255)
                                                                                                             aaaaaCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAGTATTTATCATGTCAAGTAAATTCGTGTTATAATATAGACAatgtatt                            >  1:207050/1‑140 (MQ=255)
                                                                                                             aaaaaCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAatgtatg                            <  1:11805/141‑1 (MQ=255)
                                                                                                             aaaaaCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAatgtatg                            <  1:542442/141‑1 (MQ=255)
                                                                                                              aaaaCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTAGTGATATAATATAGACAatgtatgt                           <  2:737135/141‑1 (MQ=255)
                                                                                                               aaaCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAACATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTAtgtg                          <  2:123449/141‑1 (MQ=255)
                                                                                                                 aCAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAg                        <  2:708492/141‑1 (MQ=255)
                                                                                                                  cAGATTTAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTCCTTAATTGTATAATAAACTAAGAATATTTATCATGTCAAGTAAATTAGTGATATAATGTAGACActggaggggtgg                       >  1:739124/1‑132 (MQ=255)
                                                                                                                      tttAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGaa                   >  1:434543/1‑141 (MQ=255)
                                                                                                                       ttAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGaaa                  >  2:601/1‑141 (MQ=255)
                                                                                                                       ttAAATCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTAGCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGaaa                  >  2:620822/1‑141 (MQ=255)
                                                                                                                         aaaTCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGCCAATGAATGTGAGGCGAAAga                >  2:375095/1‑140 (MQ=255)
                                                                                                                         aaaTCTTTTGTTTCGAACAAACGTTGATACCTCCTAATTAAAAGCTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGTTATAATATAGACAATGTGTGTGAGGTGAAAGt                >  1:497646/1‑141 (MQ=255)
                                                                                                                            tCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATg             <  2:353836/141‑1 (MQ=255)
                                                                                                                            tCTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATg             <  2:462197/141‑1 (MQ=255)
                                                                                                                             cTTTTGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGt            <  1:293750/141‑1 (MQ=255)
                                                                                                                              ttttGTTTCTAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGtt           >  1:270900/1‑141 (MQ=255)
                                                                                                                               tttGATTCTAACATACGTTTATACCTCCTAATTAAAAGTTTGGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTa          >  1:622388/1‑141 (MQ=255)
                                                                                                                                       tAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTgaaga  <  1:30912/141‑1 (MQ=255)
                                                                                                                                       tAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTgaaga  <  1:863764/141‑1 (MQ=255)
                                                                                                                                       tAACATACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTgaaga  <  2:38296/141‑1 (MQ=255)
                                                                                                                                       tAACATACGTTTATACCACTTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTgaaga  <  1:63552/141‑1 (MQ=255)
                                                                                                                                       tAACACACGTCTATACCTCCTACTTAAAAGTTGAGGCGACCCTAATTAATTGTATAATAAACTGAGAATATTTATCCTGTCAAGTAAAGTCGTGCAAAGAAGTGATTTATGTATGTGAGGTGAAAGTATGTTAACTgaaga  <  1:902391/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                       
AGACTTGATAAGGGAAGATTTACCAGCACCATTCGGGCCCATGATACCAATTATTTCGCCGCGTACTGGTATCGATAAGGAAATGTTTTTAAGTACATGCTTATTACCTAAAAACAGATTTAAATCTTTTGTTTCTAACAAACGTTTATACCTCCTAATTAAAAGTTTAGGCTAACCTAATTAATTGTATAATAAACTGAGAATATTTATCATGTCAAGTAAATTCGTGATATAATATAGACAATGTATGTGAGGTGAAAGTATGTTAACTGAAGA  >  CP000730/707769‑708044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: