New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 800928	27 (0.910)	3 (0.110)	3/246	NT	8.0%	intergenic (+62/‑289)	hisC1/USA300HOU_0748	histidinol‑phosphate transaminase/hypothetical protein
	?	CP000730	801948 =	43 (1.530)					intergenic (+189/+435)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase

GTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATT  >  CP000730/800792‑801067                                                                                                                                         |                                                                                                                                            gtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATCCTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                                                                                         <  2:137150/141‑1 (MQ=255) gtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                                                                                         <  1:255321/141‑1 (MQ=255)     gAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTg                                                                                                                                     >  1:301677/1‑141 (MQ=255)        ttACAATTGGTTTTAAAGAACAAAATGATAACATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCt                                                                                                                                  <  1:67855/141‑1 (MQ=255)            aaTTGTGTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACGTGAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTGGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAg                                                                                                                              <  2:21127/141‑1 (MQ=25)                ggTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAAt                                                                                                                          <  1:285179/141‑1 (MQ=255)                   tttAAAGAAAAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTgg                                                                                                                       >  2:41882/1‑141 (MQ=255)                        aGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                                                                  <  2:301677/141‑1 (MQ=255)                             aaaaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagta                                                                                                             >  2:340724‑M1/1‑109 (MQ=255)                               aaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGGATCCACTTtc                                                                                                           >  1:73443/1‑141 (MQ=255)                                  gATAAAATGTTAGAAGTTTTGTCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTctct                                                                                                        >  1:358716/1‑141 (MQ=255)                                        aTGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAGCCAATTTCTCTttgttg                                                                                                  <  2:346068/141‑1 (MQ=255)                                            tAGAAGTTTGATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGc                                                                                              <  2:77741/141‑1 (MQ=255)                                              gaagaattATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTACGCAAAATTTATTTCGTCGTCCCACCCCAACCTGCAGTGTCTGTAGAAATTGGGAATCCAATTTCACTTTGTTCGGGccc                                                                                            >  2:81898/7‑141 (MQ=18)                                                  ttttATCAAACTTTACATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccgcc                                                                                        <  1:167961/141‑1 (MQ=255)                                                      aTCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCGTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCa                                                                                    >  1:42829/1‑141 (MQ=255)                                                       tCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCaa                                                                                   >  2:42762/1‑141 (MQ=255)                                                           aCTTTAAATACGAATAGTAAGGGGGGGGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGtt                                                                               <  2:114698/141‑1 (MQ=255)                                                                    aCGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGGAAAATTTATATAGTCAACCAACCCCAACTTGCATGGTCCGTAGAAAGTGGGAATCCAATCTCTTTTAGTTGGGGCCCCGCCGGCAAGGTTGaaaaaaaa                                                                      <  2:226855/141‑8 (MQ=14)                                                                      gAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTTTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGCAttt                                                                    >  2:37401/1‑140 (MQ=255)                                                                          agtaagtaGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaa                                                                >  1:51766/1‑141 (MQ=255)                                                                          aGTAAGTGGGGAGTAGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaa                                                                >  2:243384/1‑141 (MQ=255)                                                                            tAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaaaa                                                              >  1:94389/1‑141 (MQ=255)                                                                              aGTGGGGAGTGGGACAGAAATGATACTGTCGCAAAATTTATGTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacat                                                            <  1:17605‑M1/141‑82 (MQ=255)                                                                              aGTGGGGAGGGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGc                                                            <  2:194133/141‑1 (MQ=255)                                                                                   ggAGTGTGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGtt                                                       <  2:72073/141‑1 (MQ=37)                                                                                     aGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGAGACCCCGCCGGCAAGGGTGACTAGAATTGAAAAAAGATTGTTAc                                                     >  1:30724/1‑141 (MQ=255)                                                                                        gggACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                  >  1:57110/1‑141 (MQ=38)                                                                                                           cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGAATAAAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                               <  2:87152/141‑1 (MQ=25)                                                                                                               aaaTTTATTTCGTCGTCCCCCCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacata                           <  1:326870‑M1/141‑115 (MQ=255)                                                                                                                        tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  >  1:298891/1‑141 (MQ=35)                                                                                                                              tcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACttt            >  1:250649/1‑141 (MQ=35)                                                                                                                                      cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTATCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCa    <  1:43019/141‑1 (MQ=25)                                                                                                                                        aCataaagtaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtatacattagccgtgactaatgataaagaatcgctacataataaatcattactcgttctttatcc  >  2:12793‑M1/1‑2 (MQ=255)                                                                                                                                         |                                                                                                                                            GTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATT  >  CP000730/800792‑801067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.