New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 260086693 (1.330)3 (0.050) 3/238 NT 3.2% intergenic (‑278/+589) USA300HOU_2461/USA300HOU_2462 hypothetical protein/hypothetical protein
?CP000730 = 2600882 95 (1.480)intergenic (‑294/+573) USA300HOU_2461/USA300HOU_2462 hypothetical protein/hypothetical protein

AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2600716‑2600866
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtcatgctTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT  <  CP000730/2600882‑2600743
                                                                                                                                                                                                                                                                                                    
AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGT                                                                                                                                                         >  2:191407/1‑141
  CTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCCCTAAAACTGTAATTTTTTCGAAGCTGAACCTAATAGATCTAACTATTAGTTAA                                                                                                                                                       >  2:16582/1‑141
   TCTATCTAGTAGGTAAGTCATGCGAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGAATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAG                                                                                                                                                      >  2:599734/1‑141
      ATCTAGTAGGTACGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGGAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATCGCTCTCTCTAATATGTAAGTCg                                                                                                                                                   >  1:15775/1‑140
      ATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCCTGGCTCTTATGCAGTTGTTGCGAAGCAACCCACTGTATTCCCCTAAAACTGTAATTTTTCAGAAGCTGGAACTAATACCTCGATATATTGATTAAGTCc                                                                                                                                                   >  2:730518/1‑140
         TAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTATGTAAGTCgtcc                                                                                                                                                >  2:520397/1‑137
                                                                     GAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTTTCCACTTTGCGGGTTAGCATGACTTGCCTAATAGATAGAGCTATTAGGTTCAGCTTCT                                                                                   <  1:599734/141‑1
                                                                                                     ATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGC                                                   <  2:392057/141‑1
                                                                                                             GAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACCCGCAAAGTGGAAAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCG                                           <  1:392057/141‑1
                                                                                                                                              AGTCATGCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTT          <  2:62130/141‑1
                                                                                                                                                  ATGCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGTGCCATGGTTTTCGCTTTTGCG      <  2:573124/141‑1
                                                                                                                                                    GCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATGGATAGAGCTTTTAGGTTCAGCTTCTAAAAAATTACAGTTTTCGAGGAATACAGGTGCTTGCTTAGCAACAACTGCATAAGAGCCAGTGTTTTCTCTGTTGCGAt    >  2:211291/1‑140
                                                                                                                                                    GCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACATCTGCATAAGAGCCATGGTTTTCGCTTTTGCGAA    <  2:552330/141‑1
                                                                                                                                                    GCTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAA    <  1:651345/141‑1
                                                                                                                                                     CTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAAT   <  1:755140/141‑1
                                                                                                                                                     CTTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAAT   >  1:707507/1‑141
                                                                                                                                                      TTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT  <  2:148684/141‑1
                                                                                                                                                                                                                                                                                                    
AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2600716‑2600866
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtcatgctTTCCACTTTGCGGGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT  <  CP000730/2600882‑2600743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.