BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	895785 =	82 (1.170)	5 (0.080)	4/226	NT	7.0%	coding (806/822 nt)	USA300HOU_0849	ABC superfamily ATP binding cassette transporter, binding protein
*	?	CP000730	= 909740	61 (1.000)	5 (0.080)	4/226	NT	7.0%	intergenic (‑663/‑371)	ear/USA300HOU_0868	Ear protein/hypothetical protein

Only 100 of 102 total aligned reads displayed.

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  CP000730/895645‑895924

 gttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatt                                                                                                                                            >  1:105567‑M1/140‑141 (MQ=255)

 aGTGCGAAAGATAATCCTTATGCAAAATTAATTGCTGTTACAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTTCAATCTAAAGATATTCAAGCCTTCATGAATGAAAAATACAATGGTGAAGtt                                                                                                                                            >  2:244596/1‑141 (MQ=255)

  ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattt                                                                                                                                           <  1:400601‑M1/3‑2 (MQ=255)

   tgttttcaagggaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattat                                                                                                                                          >  2:455032‑M1/138‑141 (MQ=255)

     cGAAAGATAATCCTTATGCAAACTTAATTGCTGTTTAAGAAGTACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTc                                                                                                                                        <  2:456925/141‑1 (MQ=255)

     cGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTc                                                                                                                                        >  1:820948/1‑141 (MQ=255)

     cGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTc                                                                                                                                        <  2:401584/141‑1 (MQ=255)

      tttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttctaaatgcatatatacaaatgttttgattgccctttaacttccttgataatctgactaaTTATTcc                                                                                                                                       >  2:805239‑M1/135‑141 (MQ=255)

         caagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgagaatctggctaaTTATTCCTGc                                                                                                                                    >  1:433247‑M1/132‑141 (MQ=255)

         aGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGTACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGc                                                                                                                                    <  2:510977/141‑1 (MQ=255)

          aagtgcaaaaaaagtgcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCt                                                                                                                                   >  2:761656‑M1/131‑141 (MQ=255)

           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                  <  2:649999‑M1/12‑1 (MQ=255)

            gggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTaa                                                                                                                                 >  1:208049‑M1/129‑141 (MQ=255)

             ggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTGTTGCtaat                                                                                                                                <  1:305474‑M1/14‑2 (MQ=255)

             ggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTaaa                                                                                                                                >  2:449284‑M1/128‑141 (MQ=255)

               ttcTTATGCAACCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaata                                                                                                                              <  1:95293/139‑1 (MQ=255)

                 cTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTAATTCCTGCTAaataat                                                                                                                            >  1:521173/1‑141 (MQ=255)

                    aTGCCAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAcc                                                                                                                         <  2:187732/141‑1 (MQ=255)

                    aTGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAcc                                                                                                                         <  1:647768/141‑1 (MQ=255)

                       cAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataaatcatat                                                                                                                      <  1:471133/141‑8 (MQ=255)

                         aaCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAGGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGCCTTCATGAATGAAAAATACAATGGTGCAGTTATTCCAGCTAACTAATACCAATta                                                                                                                    >  2:432765/1‑141 (MQ=255)

                          aCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaa                                                                                                                   >  1:528726/1‑141 (MQ=255)

                           cTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                  <  1:187066/141‑1 (MQ=255)

                            ttAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaat                                                                                                                 <  1:321084/141‑1 (MQ=255)

                               aatGCTGTTAATGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                              <  2:797124/139‑1 (MQ=255)

                               aatGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATTAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                              <  2:299149/139‑1 (MQ=255)

                               aTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaactaaa                                                                                                              >  2:837849/1‑141 (MQ=255)

                               aTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                              >  2:702908/1‑141 (MQ=255)

                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             <  1:503678/141‑1 (MQ=255)

                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             <  1:88493/141‑1 (MQ=255)

                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             <  2:66839/141‑1 (MQ=255)

                                 tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaaa                                                                                                            <  1:309556/141‑1 (MQ=255)

                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                     <  1:490597/141‑1 (MQ=255)

                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                     >  1:469581/1‑141 (MQ=255)

                                         aagaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTCCACTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCttt                                                                                                    <  1:158252/141‑1 (MQ=255)

                                         aagaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTACTGCTAAATAATACCAATTAAATAAAAATAACCttt                                                                                                    >  1:644899/1‑141 (MQ=255)

                                           gaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaa                                                                                                  >  1:83605/1‑141 (MQ=255)

                                            ggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                                 <  1:711587‑M1/45‑1 (MQ=255)

                                               gACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATCAAATAAAAATACCCTTTAATaac                                                                                              <  2:405555/141‑1 (MQ=255)

                                                   tCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACg                                                                                          >  1:791152/1‑141 (MQ=255)

                                                   tCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAAAAAAAATACCCTTTAATaacaaca                                                                                          >  1:188482/1‑140 (MQ=255)

                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTa                                                                                      >  1:798015/1‑141 (MQ=255)

                                                        aagatAAATAAATCAAAGCATTTATTGAAGTATTACAATCTAAAGAGATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAAGAATAAAAAAAAAAAAAAAATACCCTTTAATAACAACGATTaa                                                                                     <  2:579959/139‑1 (MQ=255)

                                                         tgatAAGAAAATCAAGGCATTAATTTAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAg                                                                                    >  1:421077/1‑141 (MQ=255)

                                                          taataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAAAAACGATTAAgg                                                                                   <  2:838777‑M1/59‑1 (MQ=255)

                                                             aaGAACATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGCTTAAGGGGt                                                                                <  2:43562/141‑1 (MQ=255)

                                                               gAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAACTTCTTATTAAGAACAACGATTAAGGGGTTa                                                                              >  2:798996/1‑141 (MQ=255)

                                                                  aaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttt                                                                           <  2:83605/141‑1 (MQ=255)

                                                                  aaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttt                                                                           <  2:424148/141‑1 (MQ=255)

                                                                  aaTCAAAGCATTAAATGAAGTATTACAATCTAAAGATAATCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttt                                                                           <  2:806695/141‑1 (MQ=255)

                                                                     cAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTtg                                                                        <  1:315133/141‑1 (MQ=255)

                                                                        aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTgg                                                                     >  2:443950/1‑141 (MQ=255)

                                                                         gCATGAATTGAAGTATTACACTCTAAAGAGAGTCAAGACTTCAATAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGGGGt                                                                    <  2:242253/141‑1 (MQ=255)

                                                                             tAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAGTGGGTGATTTTTGTGGTATTg                                                                >  1:812283/1‑141 (MQ=255)

                                                                               aTTGAAGTATTATAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaa                                                              <  1:452850/141‑1 (MQ=255)

                                                                               aTTGAAGTACTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaa                                                              <  1:452874/141‑1 (MQ=255)

                                                                               aTTCAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGaa                                                              <  2:15200/141‑1 (MQ=255)

                                                                                   aattATTACAATCTAAATGTATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATGAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATa                                                          <  2:103231/138‑1 (MQ=255)

                                                                                    aGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGTAAATaa                                                         >  2:286033/1‑141 (MQ=255)

                                                                                        ttACAATCTAAAGATGTTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTAGTATTGTAAATaaaaaa                                                     >  1:623324/1‑141 (MQ=255)

                                                                                        ttACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaaa                                                     >  2:739459/1‑141 (MQ=255)

                                                                                         tACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAGGGGGTTATTTTTGTGGTATTGAAAATAAAAAAg                                                    >  1:26707/1‑141 (MQ=255)

                                                                                             aTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGca                                                <  2:265766/141‑1 (MQ=255)

                                                                                              acTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcac                                               <  1:520948/140‑1 (MQ=255)

                                                                                                taaatggagtaaaGACGTCAATAATGAAAAAAACAATGGTGTAGTTATTCCTTCTACATAATTCCAACTAAATAACAATACCCTTTGATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                             <  2:271628/130‑1 (MQ=255)

                                                                                                tAATGATATTCAAGACATCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                             <  2:692743/141‑1 (MQ=255)

                                                                                                aaaaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAAGAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                             <  2:307610/140‑1 (MQ=255)

                                                                                                  aatatatTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACTATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACtaaa                                           <  1:414370/138‑1 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATcaacgggggtgcaaca                                           <  2:598316/141‑14 (MQ=255)

                                                                                                  aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                           <  1:521145/141‑1 (MQ=255)

                                                                                                         tgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAGTAAAAAAGGGCACAAAAGGGGCAg                                    <  1:650203‑M1/106‑1 (MQ=255)

                                                                                                         tgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAg                                    <  1:333913‑M1/106‑1 (MQ=255)

                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                   >  1:349317/1‑141 (MQ=255)

                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                   >  2:656009/1‑141 (MQ=255)

                                                                                                           aaGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAATGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCGGta                                  >  2:548117/1‑141 (MQ=255)

                                                                                                           aaGACTTCATTAATGAAAAAGACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGta                                  >  2:633442/1‑141 (MQ=255)

                                                                                                                 tCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCa                            >  2:269351/1‑141 (MQ=255)

                                                                                                                    ttAATGAAAAATACAATGGTGCAGTTACTCATGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                         <  2:530305/141‑1 (MQ=255)

                                                                                                                    ttAAAGAAAAATGCAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGCATCGAGAATAAAAAAGGGCACAAAAGGAGCAGTATATGCAAAt                         >  1:591251/1‑141 (MQ=255)

                                                                                                                      aaggAAAAATACAATGTTGCAGTTATTCCTGCTAAATAATATCCATTAAATAAAAATCGCCTTTAATAACAACGATTAAGGGGTTATTTTTGTTGTATTGAAAATAAAAAAGGGCCCTAAAGGGGCAGTATATGCAAATTa                       <  2:157923/138‑1 (MQ=255)

                                                                                                                      aaTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCATAAAAGGGGCAGTATATGCAAATTa                       >  1:777745/1‑141 (MQ=255)

                                                                                                                      aaTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                       >  1:839005/1‑141 (MQ=255)

                                                                                                                      aaTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                       >  2:783359/1‑141 (MQ=255)

                                                                                                                      aaTGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTAGATGCAAAttt                       >  1:183144/1‑140 (MQ=255)

                                                                                                                       cttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTAt                      <  1:412394‑M1/120‑1 (MQ=255)

                                                                                                                        tGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATc                     <  1:130043/141‑1 (MQ=255)

                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                    >  1:690463/1‑141 (MQ=255)

                                                                                                                         gAAAAATACAATGGTGCAGCAGTTACTTCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCCAATTAACg                    >  1:202092/1‑141 (MQ=255)

                                                                                                                          aaaaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGAAAATTGTCGa                   >  2:647296/1‑141 (MQ=255)

                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAACTTATCGAAt                 >  1:681872/1‑141 (MQ=255)

                                                                                                                               tACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTTTTTTTGAAAAGAAAAAAGGGCACAAAAGTGGCTGTATATGTAAATTGTCGAAtttt              >  2:589609/1‑141 (MQ=255)

                                                                                                                               tACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCAAAttgt              >  2:294213/1‑139 (MQ=255)

                                                                                                                                aCAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTTGTTTTTTAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa             >  2:556394/1‑141 (MQ=255)

                                                                                                                                 cAATGGTGCAGTTATTCCTGCATAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCCCAAAAGGGGCAGTATATGCAAATTATCGAATTTTaa            <  1:579787/141‑1 (MQ=255)

                                                                                                                                   aTGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAAc          <  2:820948/141‑1 (MQ=255)

                                                                                                                                     ggTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaa        <  1:432765/141‑1 (MQ=255)

                                                                                                                                      gTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTTTCGAATTTTAAACaaa       <  1:497749/141‑1 (MQ=255)

                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGCTTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaaa   >  2:100914/1‑141 (MQ=255)

                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCAAATTTTAAACAAAAAAAt  >  1:425479/1‑141 (MQ=255)

                                                                                                                                           aTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCAGAAAAGGGGCAGTATATGCAAATTATCGAATTTTaaaaaaaaaaaa  <  2:451799‑M1/140‑2 (MQ=255)

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  CP000730/895645‑895924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.