New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2085296 =66 (0.940)5 (0.080) 5/232 NT 8.0% intergenic (‑558/‑400) mapW2/USA300HOU_1944 cell surface protein MapW2/hypothetical protein
?CP000730 = 2128343 56 (0.900)intergenic (+57/+1062) int/USA300HOU_2011 bacteriophage integrase/possible leukocidin subunit

TACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128205‑2128483
                                                                                                                                          |                                                                                                                                            
tACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtg                                                                                                                                            >  1:772641‑M2/1‑139 (MQ=255)
 aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtat                                                                                                                                           <  2:269818‑M2/141‑4 (MQ=255)
      cgggtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCa                                                                                                                                      <  2:66485/138‑1 (MQ=255)
      cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGCAGAGGACAAAAAAACAACTAAAATTTTATAAAGTAGTTAATTTGGTGACCCATTAGGGACTCCAAACCCAAAAAATACTGTTGTTACAAGGTTTCTGtttatcca                                                                                                                                      <  1:801729‑M2/141‑9 (MQ=255)
      cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      <  1:811339‑M2/141‑9 (MQ=255)
      cGTGTATTCTCATTTGTAAGAATAAAAATTTAATGAAGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGTACCCATGAGGGACTCCAAACCCAATAAGTACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      >  2:43024‑M2/1‑133 (MQ=255)
        tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  1:174858‑M2/141‑11 (MQ=255)
        tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAggtatccaaa                                                                                                                                    <  2:451821‑M2/141‑11 (MQ=255)
             tcttATTTGTTAGAAAAAAAATTTAATGAAGTGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggg                                                                                                                               <  2:42040/141‑1 (MQ=255)
               tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggaga                                                                                                                             <  2:112820‑M2/141‑18 (MQ=255)
                cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            <  1:10863/141‑1 (MQ=255)
                cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            >  1:46430/1‑141 (MQ=255)
                cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            >  1:837595/1‑141 (MQ=255)
                                aaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAACAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaatta                                                                                                            >  1:740833‑M2/1‑107 (MQ=255)
                                aaTTTAATAAGGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGa                                                                                                            <  1:732883/141‑1 (MQ=255)
                                  tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAAGCGCTGAtt                                                                                                          >  1:747754/1‑141 (MQ=255)
                                  tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTACTAtgtatccaaactggagacttttaacataaaattact                                                                                                          <  2:366021‑M2/141‑37 (MQ=255)
                                     aaTGAAGAGGACAAAAAAACAACTAAAATATTAGAAAGTATGTAATTTAGGGACCCATGAGGGACTTCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGTCAATATATTCGCGCAGAGTTaa                                                                                                       >  2:500100/1‑141 (MQ=255)
                                      aTGAAGAGGACAGAAAAACAATTAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTGGTTACAAGGGATATATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      >  1:433675/1‑141 (MQ=255)
                                         aaaagcaCAAAAAAACAACTAAAATTTGACAAAGTATGTAAAGTAGAGACCCAGTAGGGACTTCAACCCCAATAAAGACTGTTTTTACAAGGTTTTTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  2:270933/135‑1 (MQ=255)
                                         aaGATGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  1:50678/141‑1 (MQ=255)
                                         aaGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  2:677351/141‑1 (MQ=255)
                                          agacGACAAAAAAACCACCAAAACCTTAGAAAGCATGTAATTGAGGGCCGCATTAGGGACTCCAAACCCAATAAATACGGTTGTTACAATGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  2:368242/141‑1 (MQ=255)
                                                 aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtctt                                                                                           >  2:703001/1‑141 (MQ=255)
                                                 aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCCATGATTTAATCGGACAAtctt                                                                                           >  2:313090/1‑141 (MQ=255)
                                                  aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttc                                                                                          >  2:740393/1‑141 (MQ=255)
                                                   aaaagCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         <  1:259242/141‑1 (MQ=255)
                                                   aaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         >  1:450930/1‑141 (MQ=255)
                                                      aacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTtat                                                                                      >  1:36853/1‑141 (MQ=255)
                                                          acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAAGATAAACGCGCTGATTTAATCGGACAAtgtgagtatttta                                                                                  >  1:641808/1‑129 (MQ=255)
                                                          acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGCACCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  <  1:161372/141‑1 (MQ=255)
                                                            tAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                >  1:756176/1‑141 (MQ=255)
                                                            tAAAATTCTAGAAAGTAGGTAAGTTAGGGACCGATGAGGGACTCCAAACCCAATAAATACTGATGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                <  2:606011/141‑1 (MQ=255)
                                                            tAAAATATTAGAAAGTATGTAATTTAGGGGCCCATTAGGGACTCCAAACCCAATAAATACTGTGGTTACACGGTGTCTATATATCCAAACTCGGGGCAAAATAAACCCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                >  2:700082/1‑141 (MQ=255)
                                                                aTTTGAAAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaata                                                                            <  2:377279/141‑1 (MQ=255)
                                                                  tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataat                                                                          >  1:492418/1‑141 (MQ=255)
                                                                    tAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCCCACCAACATCAGCCCGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatga                                                                        <  1:64193/141‑1 (MQ=255)
                                                                      gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATCTCACCGAGCTGATTTACTCGGACACTCTTCTTATATTAAAaatacgcatt                                                                      >  2:789722/1‑135 (MQ=255)
                                                                       aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATCCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGGTTTAATCGGACACTCTTATTATATTAAAACTACTGAGGt                                                                     >  1:493155/1‑141 (MQ=255)
                                                                       aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     >  2:380434/1‑141 (MQ=255)
                                                                         aGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCg                                                                   >  1:580651/1‑141 (MQ=255)
                                                                          gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                  >  1:48633/1‑141 (MQ=255)
                                                                            aTGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataa                                                                >  2:309021‑M2/1‑63 (MQ=255)
                                                                              gTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  1:87654/141‑1 (MQ=255)
                                                                              gTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  2:756176/141‑1 (MQ=255)
                                                                                  tttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCa                                                          >  2:711712/1‑141 (MQ=255)
                                                                                      gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcatt                                                      <  2:551256‑M2/141‑89 (MQ=255)
                                                                                       ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:462722/1‑141 (MQ=255)
                                                                                       ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     <  2:741302/141‑1 (MQ=255)
                                                                                       ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     <  1:33662/141‑1 (MQ=255)
                                                                                          cccATTAGGGACTCCAAACCCAAGAAAGACTGTTGTTACAAGGTTTCTAtctacccaaactggagacctttaacataaaattactgatcattcaaaaagtaaaacagcagaatatcaaggtttataactttatcattatca                                                  >  1:30764‑M2/1‑49 (MQ=255)
                                                                                              ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAGTTg                                              >  1:628534/1‑141 (MQ=255)
                                                                                               tAGGGACTCCATACCCAATAAATACTGTTGTTAAACGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGGAATATTCAATGAAGCATTTGa                                             <  1:434263/141‑1 (MQ=255)
                                                                                                     cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:10438/141‑1 (MQ=255)
                                                                                                     cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       >  2:704893/1‑141 (MQ=255)
                                                                                                     cTCCAAACCCAAGAAATACTGTTGTTACAAGGTTTCAATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTGATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:110849/141‑1 (MQ=255)
                                                                                                        cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGc                                    <  2:174858/141‑1 (MQ=255)
                                                                                                         aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                   >  1:81023/1‑141 (MQ=255)
                                                                                                         aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                   >  1:308340/1‑141 (MQ=255)
                                                                                                          aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:300243/1‑141 (MQ=255)
                                                                                                          aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAAGGTGCac                                  >  2:531465/1‑140 (MQ=255)
                                                                                                          aaCCCAATAAATACTGTTGTTACAAGGTTTACATGGATCCAAACTGGGGAAATTCTATAGGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:805125/1‑141 (MQ=255)
                                                                                                           aCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATc                                 <  1:692918/141‑1 (MQ=255)
                                                                                                            cccAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                                >  2:664518/1‑141 (MQ=255)
                                                                                                              caatcaatACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTGATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGCGCTTCAgc                              <  2:830623/141‑2 (MQ=255)
                                                                                                                  aaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaaa                          >  1:487257/1‑141 (MQ=255)
                                                                                                                    ataCGGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATTAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATAGTCAATGAAGCATTTGATAATGATGCATCAGACAAatt                        >  1:590033/1‑141 (MQ=255)
                                                                                                                      aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGTAGCATTTGATAATGGTGCATCAGACAAattat                      >  1:211824/1‑141 (MQ=255)
                                                                                                                      aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAaatat                      >  2:54337/1‑141 (MQ=255)
                                                                                                                        tgttgtTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAAttatta                    <  2:48633/141‑1 (MQ=255)
                                                                                                                           tgttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGt                 <  2:36133/141‑1 (MQ=255)
                                                                                                                                  aGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTATGTAATGTGa          >  1:168824/1‑141 (MQ=255)
                                                                                                                                   ggTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaa         >  2:108348/1‑141 (MQ=255)
                                                                                                                                     tttCTATGTATCCGAACTGGGGGCAATATAAACGGGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa       <  1:457681/141‑1 (MQ=255)
                                                                                                                                      ttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGAAATGTGaaaaa      >  2:473096/1‑141 (MQ=255)
                                                                                                                                       tCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaaa     >  2:535893/1‑141 (MQ=255)
                                                                                                                                        cTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAg    >  2:474103/1‑141 (MQ=255)
                                                                                                                                        cTATGTATCCAAACCGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAGCAGACAAATTATTAAGTAATGTGAAAAAAg    <  1:829196/141‑1 (MQ=255)
                                                                                                                                          aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  >  2:747985/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                            
TACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128205‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.