| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 76,265 | C→T | 27.7% | intergenic (+323/‑811) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 76,265 | 0 | C | T | 27.7% | 680.4 / inf | 555 | intergenic (+323/‑811) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Reads supporting (aligned to +/- strand): ref base C (222/174); new base T (76/78); total (303/252) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 | |||||||||||
Only 100 of 559 total aligned reads displayed.
AAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGA  >  CP000730/76125‑76404                                                                                                                                            |                                                                                                                                             aGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCg                                                                                                                                             >  1:352501/1‑141 (MQ=255)                  atTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGa                                                                                                                           >  2:796977/1‑141 (MQ=255)                    tataGCAAAATATAGGTTCTGTTGAAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGata                                                                                                                         <  2:347322/141‑1 (MQ=255)                          acaaTATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAATAGGAGTCTTCTGTATGAACTATTTCAGATATAAACGATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCAtt                                                                                                                   >  2:618165/3‑141 (MQ=255)                           attaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTg                                                                                                                  <  2:825438/135‑1 (MQ=255)                           aaaTATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGCTATGCATTg                                                                                                                  >  1:188019/1‑141 (MQ=255)                             taggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGCACTCGAGCGGAGATAAATCATGTAACGGTGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAg                                                                                                                <  1:826271/137‑1 (MQ=11)                             aagatggTACTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAg                                                                                                                <  2:708719/136‑1 (MQ=255)                              atgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGt                                                                                                               <  2:166880/138‑1 (MQ=255)                                taGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTa                                                                                                             >  1:128595/1‑141 (MQ=37)                                 aGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTAt                                                                                                            >  1:762646/1‑141 (MQ=0)                                 aGGTTCTGTTGCAAAGTCGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTATCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTAt                                                                                                            <  1:31220/141‑1 (MQ=2)                                                gTTGAATCTATAGTATCATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaa                                                                                             >  1:429732/1‑141 (MQ=25)                                                        tataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAg                                                                                     >  2:736185/1‑141 (MQ=32)                                                         ataatataatTTAAACAAAAAGGCGTCTTCTGTACGAACTAGTTCAGATATAAACAATTTAACAAGGATGTTATCACGGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                    <  1:161583/141‑2 (MQ=11)                                                         ataatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                    >  1:90141/5‑140 (MQ=12)                                                         ataataTAAGTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAga                                                                                    <  1:492541/141‑2 (MQ=255)                                                         ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAgg                                                                                    <  1:79666/141‑1 (MQ=17)                                                         ataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAgg                                                                                    <  1:625954/141‑1 (MQ=32)                                                         agaGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAgg                                                                                    <  1:100837/139‑1 (MQ=17)                                                          taGTATAATTTTAACAAAAAGGAGTCTTCTGGATGAACTATTTCAGGTATTAATATTTGCACAAGGCTTTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAggg                                                                                   <  2:321838/141‑1 (MQ=11)                                                           aatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAgaga                                                                                  <  2:762646/139‑4 (MQ=12)                                                           aGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCCTTGAGTTATCGTGATATATCTGAAATATTAAGGGa                                                                                  <  1:199717/141‑1 (MQ=17)                                                              ataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAACCAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACg                                                                               <  1:670992/141‑1 (MQ=255)                                                                aaTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtg                                                                             <  2:240042/141‑1 (MQ=17)                                                                 aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtgg                                                                            <  2:378049/141‑1 (MQ=17)                                                                  ttttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtggt                                                                           <  1:59492/141‑1 (MQ=12)                                                                   tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                                                                          <  1:383976/141‑1 (MQ=17)                                                                   tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                                                                          >  1:541285/1‑141 (MQ=32)                                                                    ttAACAAAAAGGAGTCTTCTTTATGAACTACTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGgtgt                                                                         <  2:658530/141‑1 (MQ=12)                                                                     tAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtttacac                                                                        <  1:717846/141‑7 (MQ=255)                                                                     tAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGACTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGACATATTAAGAGAACGTGGTGTa                                                                        >  2:393050/1‑141 (MQ=255)                                                                      aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCCTTGAGTTATCGTGATATATCTGAAATATCAAGGGAACGTGGGGTaa                                                                       >  1:55850/1‑141 (MQ=255)                                                                      aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                                                       >  1:639120/1‑141 (MQ=32)                                                                      aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGATACGATCTACGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                                                       >  2:504738/1‑141 (MQ=11)                                                                        cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAAc                                                                     <  1:693312/141‑1 (MQ=32)                                                                        cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAAc                                                                     <  1:577616/141‑1 (MQ=17)                                                                          aaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGt                                                                   >  1:664437/1‑141 (MQ=17)                                                                           aaaGGAGTCTTCTGTATGAACTATTTAAGATATAAACAATTTAACAAGGATGTTCTCACTGTCGCCG‑TTGGCTACTATCACAGATATGCCTTGACCTACCGGGATAGAACGGAAATAGTAAGAGAACGTGGTGTAAACGtt                                                                  >  2:486363/1‑141 (MQ=11)                                                                             aGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                                <  1:471581/141‑1 (MQ=17)                                                                               gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatc                                                              >  2:258046/1‑141 (MQ=17)                                                                                aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatca                                                             <  2:406393/141‑1 (MQ=17)                                                                                 gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTcatcat                                                            <  2:42462/141‑1 (MQ=17)                                                                                 gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACGGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATAGCTGAAATATTAAGGGAACGTGGGGTAAACGTTcatcat                                                            >  1:485957/1‑141 (MQ=12)                                                                                   cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTc                                                          <  1:294324/141‑1 (MQ=12)                                                                                   cctctGTCGGAACTATTGCAGATAGAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTc                                                          <  2:574346/139‑1 (MQ=11)                                                                                      ttGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAAc                                                       <  2:783387/140‑1 (MQ=12)                                                                                       tGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACg                                                      >  2:628938/1‑141 (MQ=17)                                                                                           tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCt                                                  >  2:208138/1‑141 (MQ=17)                                                                                           tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCt                                                  >  1:108088/1‑141 (MQ=12)                                                                                             aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGCAATATTAAGAGAACGTGGTGTAAACGTTGATCATTCAACGATCTAc                                                >  1:243342/1‑141 (MQ=11)                                                                                             aaCTATTTCAGATATAAACAATTTAACAAGGATGGTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTCAGCTATCGTGATATATCTGACATATTACGAGAACGTGGTGTAAACGTTCATCATTCGACGATATAc                                                >  1:283769/1‑141 (MQ=11)                                                                                               cTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCACCGGTCTACCg                                              >  2:342879/1‑141 (MQ=17)                                                                                                gaggtCAGATATAGACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                             <  2:836670/137‑1 (MQ=11)                                                                                                  tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTGCCCG‑TAAGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                           <  1:229932/141‑1 (MQ=11)                                                                                                  tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                           >  1:372802/1‑141 (MQ=17)                                                                                                  tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTGCATCATTCAACGGTCAACCGTTg                                           >  2:29390/1‑141 (MQ=12)                                                                                                  tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATCTCTGCAATATGAAGGGAACGTGGTGTACACGTTCATCATTCAACGGTCTACCGTTg                                           <  1:530832/141‑1 (MQ=255)                                                                                                  tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCGTCATTCAACGGTCTACCGTTg                                           >  1:21876/1‑141 (MQ=17)                                                                                                  ttgtgtagataAACAAGTGAATTAGGATGTTATCAATGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATAGATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                           <  1:738616/133‑1 (MQ=11)                                                                                                   ttCTGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTgg                                          <  1:814323/141‑1 (MQ=255)                                                                                                   ttCAGATATAAACCATTTAACAAGGAGGCTATCACTGGAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTgg                                          <  1:17064/141‑1 (MQ=11)                                                                                                   ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTgg                                          >  2:119950/1‑141 (MQ=17)                                                                                                   ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTgg                                          <  2:277330/141‑1 (MQ=32)                                                                                                   ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTgg                                          >  2:45557/1‑141 (MQ=12)                                                                                                    tgaGATACAAACAATTTAACAAGGATATTATCATTGTACCTG‑TTGGCTACTAGCTAATATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTCGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                         <  2:70184/139‑1 (MQ=11)                                                                                                    tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                         <  2:462316/141‑1 (MQ=17)                                                                                                     cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTCGATCATTCAACGGTCTACCGTTGGGt                                        >  1:630589/1‑141 (MQ=12)                                                                                                      aGATATAAACACTTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTATTATCTAAGATATGCATTTAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                       <  2:144078/141‑1 (MQ=11)                                                                                                      aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGtt                                       >  2:442405/1‑141 (MQ=17)                                                                                                         tataAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCaa                                    <  1:772438/141‑1 (MQ=17)                                                                                                         tataAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCaa                                    >  2:726554/1‑141 (MQ=12)                                                                                                          ataAACAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAg                                   >  1:726077/1‑141 (MQ=17)                                                                                                            aaaCAATTTAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGaa                                 >  1:122849/1‑141 (MQ=17)                                                                                                             aaCAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTCCCGTTGGGTTCAAGAat                                >  1:339671/1‑141 (MQ=255)                                                                                                             aaCAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAat                                >  1:837330/1‑141 (MQ=12)                                                                                                             aaCAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATAATTCAACGATCTACCGTTGGGTTCAAGAat                                >  2:530842/1‑141 (MQ=11)                                                                                                              aCAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGCata                               >  1:325928/1‑141 (MQ=255)                                                                                                               cAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGGatat                              >  1:4587/1‑141 (MQ=17)                                                                                                                aaTTTAACAAGGATGTTATCCATGT‑GCCGAGGGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATg                             >  1:405274/1‑141 (MQ=11)                                                                                                                 aTTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGc                            >  2:477989/1‑141 (MQ=12)                                                                                                                  tttAACAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGcc                           <  2:132823/141‑1 (MQ=17)                                                                                                                    tAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGcccc                         <  1:96101/141‑1 (MQ=32)                                                                                                                    tAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTTCCGTTGGGTTCAAGAATATGcccc                         <  1:611021/141‑1 (MQ=255)                                                                                                                      aCAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCaa                       >  2:641663/1‑141 (MQ=17)                                                                                                                       cAAGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAAt                      >  2:264487/1‑141 (MQ=17)                                                                                                                        aaGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGTCCCAAtt                     >  1:255201/1‑141 (MQ=17)                                                                                                                        aaGGATGTTATCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAAGATGCCCCAAtt                     >  2:581116/1‑141 (MQ=17)                                                                                                                            aTGTTATCACTGTAGCCG‑TTGGCTATTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCGCCATTTtat                 >  2:808190/1‑141 (MQ=11)                                                                                                                            aTGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATTGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCTTCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTtat                 <  2:546800/141‑1 (MQ=11)                                                                                                                              gTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTatat               >  2:227182/1‑141 (MQ=255)                                                                                                                              gTTATCACTGTAGCCG‑ATGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTtatgt               >  1:416284/1‑139 (MQ=11)                                                                                                                                 aTCACTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTTAGTTATCACAAGATCTAAAAAATATTAAGGGAACGTTGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCaa            <  1:785292/141‑1 (MQ=11)                                                                                                                                   cACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAt          >  1:141591/1‑141 (MQ=34)                                                                                                                                    aCTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAtt         >  1:703978/1‑141 (MQ=255)                                                                                                                                     cTGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAAttt        <  2:669050/141‑1 (MQ=25)                                                                                                                                      tGTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg       <  1:481184/141‑1 (MQ=25)                                                                                                                                       gTAGCTG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTTGTGTAAACGTTCATCATTCAACGATCTACCGTTGCGTTCAATAATATGCCCCAATTTTATATCAAAttttg      <  2:683483/141‑3 (MQ=11)                                                                                                                                       gTAGCCG‑TTGGCTACTATCTAAGGTATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg      <  2:188019/141‑1 (MQ=25)                                                                                                                                       gTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCACCGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg      >  1:51493/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            AAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCG‑TTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGA  >  CP000730/76125‑76404 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |