Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 117,845 A→T 6.1% E261V (GAA→GTA)  USA300HOU_0115 → possible MFS family major facilitator transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730117,8450AT 6.1% 302.8 / 8.0 101E261V (GAA→GTA) USA300HOU_0115possible MFS family major facilitator transporter
Reads supporting (aligned to +/- strand):  ref base A (36/57);  new base T (3/3);  total (39/62)
Fisher's exact test for biased strand distribution p-value = 6.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01

Only 100 of 107 total aligned reads displayed.

TGTCATTACTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTATCAATTACT  >  CP000730/117705‑117981
                                                                                                                                            |                                                                                                                                        
tGTCATTACTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGa                                                                                                                                          >  2:139562/1‑141 (MQ=255)
 ttaaTTACTAAAAGGTCAGCACTGAGTTACAAATCATTATTTTTCTATGCCTTGATTGCAAACGTAATTGTAGCCTTCTTTATTTTTTTAAAAAAAAAAAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGaa                                                                                                                                         <  2:791993/138‑1 (MQ=255)
   tatttgttaaGGTGCAGCATGTGGTTACGCATTATTATGGTTCTTTGTTTTGATTGCAACTGTAATTGTAGCTTTCTTTATTTTTTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGaaaa                                                                                                                                       <  2:293748/133‑1 (MQ=255)
   cATTACTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTCTTTTCTTAAATGGTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGaaaa                                                                                                                                       <  1:364294/141‑1 (MQ=255)
   cATTACTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGaaaa                                                                                                                                       <  1:596534/141‑1 (MQ=255)
    aTTACTAAAGGTTCAGTACTTGGTTACACATCATTAGGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAAt                                                                                                                                      <  2:673238/141‑1 (MQ=255)
        cTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAAc                                                                                                                                  >  1:265678/1‑141 (MQ=255)
            aGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCATTCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAGAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAATCata                                                                                                                              <  2:507693/141‑1 (MQ=255)
            aGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATATAAAAAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCata                                                                                                                              <  2:706753/141‑1 (MQ=255)
                  agcaCTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAgg                                                                                                                        <  1:383416/141‑1 (MQ=255)
                    caCTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCTACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTg                                                                                                                      <  1:473318/141‑1 (MQ=255)
                    caCTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGACAATAAACCATATACAGGTg                                                                                                                      <  1:443677/141‑1 (MQ=255)
                      cTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATCTACAGGTGCa                                                                                                                    >  1:377360/1‑141 (MQ=255)
                           ttACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGAt                                                                                                               <  1:164029/141‑1 (MQ=255)
                           ttACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGAt                                                                                                               <  1:163734/141‑1 (MQ=255)
                            tACACATCATTATGGTTTTTTGGTTTGATTGCAATCGTGTTTGTTGTTTTCTTCATTGTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAATATAAACCATATACCGGTGCAACGAtt                                                                                                              <  2:801894/141‑1 (MQ=255)
                            tACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTACTTTAGGAGAAACCATATACAGGTGCAACGAtt                                                                                                              <  2:384617/141‑1 (MQ=255)
                             acacATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGAttt                                                                                                             <  2:483155/141‑1 (MQ=255)
                             acacAGCATTATGTTTCTTTCGTTTGATTGCAAACGTAATTGTAGTATTCTTTATTTTCTAAAAAGAAAAAAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGAttt                                                                                                             <  2:631488/141‑1 (MQ=255)
                              cactTCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATCTACAGGTGCAACGATTTc                                                                                                            <  2:312208/141‑1 (MQ=255)
                              cacaTCATTATGGTTCTTGGGTTTGATTGCAATGTTATTTGTAGCATTCGTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCATTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTc                                                                                                            <  1:737452/141‑1 (MQ=255)
                              aacaTGATGATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTTTTAAATGATAAAAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTc                                                                                                            <  2:584035/140‑1 (MQ=255)
                               acaTCATTATGGTTCTTTGTTTTGATTGCAAGCGTAATTGTCGCATTATCTGTTGGCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGTAACGATTTCg                                                                                                           <  1:605583/141‑1 (MQ=255)
                               acaTCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGACAATCCACTTATTGATGTTAGATTATTTGATAATAAACCATATACAGGTGCAACGATTTCg                                                                                                           <  2:591474/141‑1 (MQ=255)
                                      tATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATTTCGAActtct                                                                                                    >  2:411468/1‑141 (MQ=255)
                                      tATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATATCggcattct                                                                                                    >  2:411626/1‑134 (MQ=255)
                                      tATGGTACTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATTTCGAActtct                                                                                                    >  2:526558/1‑141 (MQ=255)
                                       aTGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTCAGAAAAAAGTAGATAATCCAATCATTGATTTAAAAGTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGACcttctt                                                                                                   >  2:47571/1‑141 (MQ=255)
                                          gTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGCGAAAAAAGTAGATAATCCACTTATTGATTTTAAGTTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCttatt                                                                                                >  1:25413/1‑141 (MQ=255)
                                          gTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCttatt                                                                                                >  1:183015/1‑141 (MQ=255)
                                            tCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGACCTTCTTATTaa                                                                                              >  1:560979/1‑141 (MQ=255)
                                            tCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTaa                                                                                              <  2:355801/141‑1 (MQ=255)
                                            tCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTATTATTaa                                                                                              >  2:373001/1‑141 (MQ=255)
                                               ttagTTTTATTGGAATCCTAATTGTAGCATGCTTTATTTTCTTAAATGGTGAGAAAAAAGTATATAAGCCACTTATTGAGTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACg                                                                                           <  2:522078/138‑1 (MQ=255)
                                                 ggTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGgt                                                                                         >  1:598363/1‑141 (MQ=255)
                                                 ggTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGgt                                                                                         >  1:258733/1‑141 (MQ=255)
                                                 ggTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTAATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAAGTATTTCGAACTTCTTATTAAACGgt                                                                                         >  2:295079/1‑141 (MQ=255)
                                                  gTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGGGAAAAAAGTAGATAATCCACTTATCGATTTTAAATTATTTGAAAATAAACCATATAAAGGTGCATCGATTTCGAACTTCTTATTAATCGctg                                                                                        >  2:776951/1‑141 (MQ=255)
                                                  gTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGgtg                                                                                        <  1:277934/141‑1 (MQ=255)
                                                   tttGATTGCAACCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGgtgt                                                                                       <  1:333973/141‑1 (MQ=255)
                                                      gATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGc                                                                                    <  1:14169/141‑1 (MQ=255)
                                                            aaTCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGAAACGATTTAGTAGTAATGAATAAACGGTGTTGCAGGTaa                                                                              >  2:798806/1‑140 (MQ=255)
                                                            aaTCGTAATTGTAGCATTCTCTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCAATTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAAGTTCTTATTAAACGGTGTTGCAGGTAc                                                                              >  1:510916/1‑141 (MQ=255)
                                                               tgTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACAtt                                                                           <  1:753941/140‑1 (MQ=255)
                                                               cGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACAtt                                                                           <  1:361621/141‑1 (MQ=255)
                                                                gTAATTGTAGCATTCTTTATTTTCTTAAATGTTAAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTa                                                                          <  1:34890/141‑1 (MQ=255)
                                                                 tAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTaa                                                                         <  1:490645/141‑1 (MQ=255)
                                                                 gaaTTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTaa                                                                         <  1:490756/140‑1 (MQ=255)
                                                                  aaTTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAAt                                                                        <  1:353457/141‑1 (MQ=255)
                                                                  aaTTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAAt                                                                        >  2:312777/1‑141 (MQ=255)
                                                                  aaTTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAAt                                                                        <  1:632014/141‑1 (MQ=255)
                                                                   aTTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAAtt                                                                       <  1:724918/141‑1 (MQ=255)
                                                                    ttGTAGCATTCTTTATGTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTg                                                                      >  1:416405/1‑141 (MQ=255)
                                                                         gCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTGGCAGGTACCTTAATTGTAGCg                                                                 <  1:435755/141‑1 (MQ=255)
                                                                           aTTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATAAAGGTGCAACGATTTCGAAATGCGTATTAAACGGTGTTGCAGGTGCGTTAATTGTAGccca                                                               >  2:83730/1‑138 (MQ=255)
                                                                              cTTTATTTTCTTAAATGTTGAGAAAAAAATAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATAc                                                            >  2:179535/1‑141 (MQ=255)
                                                                               tttATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACa                                                           <  2:47708/141‑1 (MQ=255)
                                                                               tttATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACa                                                           >  2:705983/1‑141 (MQ=255)
                                                                                ttATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACAt                                                          <  1:684827/141‑1 (MQ=255)
                                                                                ttATTTTCTTAAAATTTGACAAAAAAGTAGATAATCCACTTATTTATTTTAAATTATTTGAAAATAAACCATATACAGTTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACAt                                                          <  1:492579/141‑1 (MQ=255)
                                                                                   ttttCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCTAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCg                                                       <  1:158986/141‑1 (MQ=255)
                                                                                     ttCTTAAATGTTAAGAAAAAAGTAGATATTCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTg                                                     <  1:461260/141‑1 (MQ=255)
                                                                                      tCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGc                                                    <  1:601560/141‑1 (MQ=255)
                                                                                      tCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGc                                                    <  1:83620/141‑1 (MQ=255)
                                                                                        ttAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGcaa                                                  >  2:83003/1‑141 (MQ=255)
                                                                                          aaaTGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGcaaca                                                >  2:598934/1‑141 (MQ=255)
                                                                                            aTGTTTAGAAAAAAGTAGATCTTCCACTTATTGATTTGAAATTATGTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAg                                              <  2:625030/141‑1 (MQ=255)
                                                                                             tGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAgg                                             <  2:96983/141‑1 (MQ=255)
                                                                                              gTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGt                                            <  2:774727/141‑1 (MQ=255)
                                                                                              gTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTATTGCAGGTACATTAATTGTAGCGAATACATTAGTGCAACAAGGt                                            >  2:717641/1‑141 (MQ=255)
                                                                                                 gagaAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTa                                         >  1:88688/1‑141 (MQ=255)
                                                                                                       aaaGTAGATAATCCACTTATTGATTTTAAATTATTTGAAACTAAACCATAGACAGGTGCAACGATTTCGAGCTTCTGATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATCCGTGCAACGAGGTTTAGGttgt                                   >  1:264971/1‑139 (MQ=255)
                                                                                                       aaaGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTtat                                   <  1:798806/141‑1 (MQ=255)
                                                                                                          gTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACa                                <  1:419347/141‑1 (MQ=255)
                                                                                                             gATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCa                             <  1:660805/141‑1 (MQ=255)
                                                                                                               tAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCGtt                           >  2:50055/1‑141 (MQ=255)
                                                                                                                 aTCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTGTAGGTGATACAgattggc                         >  2:653812/1‑135 (MQ=255)
                                                                                                                   ccACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcag                       <  1:526558/141‑1 (MQ=255)
                                                                                                                   ccACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcag                       <  1:411626/141‑1 (MQ=255)
                                                                                                                   ccACTTATTGATTTTAAATTATTTGTAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcag                       <  1:411468/141‑1 (MQ=255)
                                                                                                                    cACTTATTGATATTTAATTATTTAGAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAGCGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcagg                      <  1:138238/141‑1 (MQ=255)
                                                                                                                     aCTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcaggc                     <  1:705983/141‑1 (MQ=255)
                                                                                                                      cTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTgcaggca                    >  2:553895/1‑141 (MQ=255)
                                                                                                                        ttttGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGcagtcagg                  <  1:598326/139‑1 (MQ=255)
                                                                                                                        aaTTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTCCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACTAGGTTTAGGTTATACAGCATTGcagtcagg                  <  2:508691/140‑1 (MQ=255)
                                                                                                                         aTTGATTTTAAATTATTTGCAAAGAAACCATATACAGGGGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGa                 <  1:188995/141‑1 (MQ=255)
                                                                                                                         aTTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGa                 >  1:214682/1‑141 (MQ=255)
                                                                                                                          ttGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGAt                >  2:428310/1‑141 (MQ=255)
                                                                                                                          ttGATTTTAAATCATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGAt                >  2:293498/1‑141 (MQ=255)
                                                                                                                           tGATTTTATATTATTTGAAAATAAACCATCTACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATa               <  2:399284/141‑1 (MQ=255)
                                                                                                                           tGATCTTAAATTATTTGAAAATAAACCATATACAGGTGCTACATCATAGATCGGGTTAGTGAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTTCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATa               <  2:255020/141‑1 (MQ=255)
                                                                                                                            gATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATAc              >  1:72898/1‑141 (MQ=255)
                                                                                                                              ttttAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACtt            >  2:32363/1‑141 (MQ=255)
                                                                                                                               tttAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTa           >  1:300800/1‑141 (MQ=255)
                                                                                                                               ttgaaaTTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAATTTTTTTTTCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTa           <  1:398249/138‑1 (MQ=255)
                                                                                                                                 tAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATATAGCATTGCAGGCAGGATACTTATc         <  1:537261/141‑1 (MQ=255)
                                                                                                                                    attattTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTATCAAt      <  2:416405/141‑1 (MQ=255)
                                                                                                                                    attattTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTATCAAt      >  1:654044/1‑141 (MQ=255)
                                                                                                                                       attTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCTACATGGTTTAAGTTATTCATCATTGCTGTCAGGATACTTAtttagtac   >  2:728362/1‑134 (MQ=255)
                                                                                                                                        tttGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGTATACTTATCAATTACt  <  1:417245/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                        
TGTCATTACTAAAGGTGCAGCACTTGGTTACACATCATTATGGTTCTTTGGTTTGATTGCAATCGTAATTGTAGCATTCTTTATTTTCTTAAATGTTGAGAAAAAAGTAGATAATCCACTTATTGATTTTAAATTATTTGAAAATAAACCATATACAGGTGCAACGATTTCGAACTTCTTATTAAACGGTGTTGCAGGTACATTAATTGTAGCGAATACATTCGTGCAACAAGGTTTAGGTTATACAGCATTGCAGGCAGGATACTTATCAATTACT  >  CP000730/117705‑117981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: