| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,657,572 | G→T | 10.1% | intergenic (‑555/‑127) | USA300HOU_2510 ← / → USA300HOU_2511 | MarR family transcriptional regulator/possible dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,657,572 | 0 | G | T | 10.1% | 192.7 / 2.0 | 78 | intergenic (‑555/‑127) | USA300HOU_2510/USA300HOU_2511 | MarR family transcriptional regulator/possible dioxygenase |
| Reads supporting (aligned to +/- strand): ref base G (29/38); new base T (7/3); total (36/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTCGAGAAAATAATTTGAAAATTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATGGCATTTCACGA > CP000730/2657432‑2657712 | cGCTCGAGAAAATAATTTGAAAATTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCg > 2:120549/1‑141 (MQ=255) ctggagaAAATAATTTGAAAATTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCa < 1:753576/138‑1 (MQ=255) taatTTGAAAATTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATaaa < 1:8882/141‑1 (MQ=255) tttaaaaTTATTGCCTCATGTTCATTTGCAAAACATATGTTAGAAAAAGAAGATTCATATCAATATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTg < 2:52867/138‑1 (MQ=255) ttGAAAATTATTGACTCATGTTCATCTGCCAAACATCTGTTAGAAAAAGCCACTCCTTATGAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCAGCGCTTTTTTGTTCGCATCAATATAAAATTg < 1:397424/141‑1 (MQ=255) gAAAATTATTGCCTCATGTTCATTTGTCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCa < 1:147568/141‑1 (MQ=255) aaaaTTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCaa < 2:795485/141‑1 (MQ=255) aaaTTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATATATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAGATTGGaaa > 2:245878/1‑141 (MQ=255) aaTTATGGCCTCGTGTTTATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAAGTTTGCGATGGTGCAACTGTACCAGCTCTTTTTTGTTCGCATCAATATAAAATTGCaaaa < 2:6422/141‑1 (MQ=255) tattGCCTCATGTTCATTTGCCAAACTTATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCTTCGCTTCTTTGTTCGCATCAATATACAATTCCaacccga > 1:723977/1‑136 (MQ=255) attGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGAc > 1:479964/1‑141 (MQ=255) ttGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACt > 2:577423/1‑141 (MQ=255) ttGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACt > 2:673528/1‑141 (MQ=255) ttCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTg < 1:550821/141‑1 (MQ=255) aTTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATCAAATTGCAAAACGACTAGTTATTTTGCAt < 2:51566/141‑1 (MQ=255) tttGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCTCGTTTTTGTTCCCATCAACACAAAACTGCAAACCGACGAGTTATTTTGCAtt < 1:438491/141‑1 (MQ=255) tttGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCAtt < 2:394436/141‑1 (MQ=255) ccAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCaa > 1:238389/1‑141 (MQ=255) ccAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCaa < 2:611886/141‑1 (MQ=255) aCATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACtt > 2:762286/1‑141 (MQ=255) atGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATg > 1:515680/1‑141 (MQ=255) tGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGc > 1:734530/1‑141 (MQ=255) gAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCa < 1:344313/141‑1 (MQ=255) gAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCa < 2:238389/141‑1 (MQ=255) aaaaaGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGCCTAGTTATTTTGCATTTCAAACTTTATGccctctt > 2:206749/1‑135 (MQ=255) aaaGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAAtt > 1:661118/1‑141 (MQ=255) gaagaTTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCAt > 1:57431/1‑141 (MQ=255) gaagaTTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTACCAATTCAt > 2:520404/1‑141 (MQ=255) acgttCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCAttt < 2:83291/138‑1 (MQ=255) aTTCATATCAAGTTGTATATCTGCGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCAttttc < 2:142933/141‑1 (MQ=255) aTTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGCTGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATGTAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCCttttt > 2:308792/1‑140 (MQ=255) cATATCAAGATGTATATTTTGGCTAAATAAATTTGGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCAttttcttt < 1:533828/141‑1 (MQ=255) cATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCAttttcttt < 1:797145/141‑1 (MQ=255) cAAGATGTATATCATGGTTAAATGCATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTTTCATTAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAATTTTATGCTATCAATTCATTTTCTTTTCTgg < 2:723977/141‑1 (MQ=255) aGATGTATACCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTCCCATCGATTTTTTGTTAGCATCCATATAAAATTGCGAAACGACTAGTTATGTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGta < 1:371158/141‑1 (MQ=255) tGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATAc < 1:707389/141‑1 (MQ=255) gTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTTTTTTTTTTTATATAAAATTGCAAAACGACTAGTTTTTTTGCATTTCAAACTTTATGCTATTAATTCATTTTCTTTTCTGCTATACt > 2:140058/1‑141 (MQ=255) gTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACt > 2:331227/1‑141 (MQ=255) gTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACt < 2:751653/141‑1 (MQ=255) tatCTTGGTTAAATAAATTTTGCTATTTAGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACtttt < 1:776948/141‑1 (MQ=255) tatCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTTTTTTTTTTTTTATAAAATAGCAAAACGACTAATTTTTTTGCGTTTCAAAGTTTATGATTTCAATTCTTtctcttttctcatatgttttt > 2:442058/1‑130 (MQ=255) tatCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACtttt < 1:623576/141‑1 (MQ=255) tatCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACtttt < 1:156299/141‑1 (MQ=255) ttCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACttttt < 2:142780/140‑1 (MQ=255) tCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTta < 2:285664/141‑1 (MQ=255) tGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGTTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATAc < 2:270371/141‑1 (MQ=255) tGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATAc < 2:270202/141‑1 (MQ=255) ttttAAATAAATTTTACGATGGGTCAACTTTACCATCGCTTTTTTGTTCTCATCCATATAAAACGACAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACt < 2:504424/139‑1 (MQ=255) ttAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCACTGTAAAATACGAAGACGTCTAGTTCTTTTGCCTCTCGAACTTTCTGCTATCCATTCATTTTCTTCTCACGCATACCTCTTATCCTaa > 2:839029/1‑141 (MQ=255) ttAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTaa > 2:80548/1‑141 (MQ=255) ttAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTaa > 2:80536/1‑141 (MQ=255) ggaaataaatTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATTCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACtga > 2:119117/3‑139 (MQ=255) acataaatATTGCGATGGTGCAACTGTACAATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTAACACATAATGCGCGTTTCTGGTATACTTTTTATACTAACt > 2:173509/3‑141 (MQ=255) ataaatTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATCCTAACTta > 1:119274/1‑141 (MQ=255) ataaatTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTta < 1:207226/141‑1 (MQ=255) taaatTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATCATAACTtat > 1:708645/1‑141 (MQ=255) tGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGGCTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTCTACTTTTTATACTAACTTatagaaaca > 1:230541/1‑139 (MQ=255) gCGATGGTGCAACTGTACCATCGCTTTTTTTTTTGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATTAATTCATTTTCTTTTCTGTTATACTTTTTATTCTAACCTatagaaaaaa > 2:20668/1‑140 (MQ=255) gCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACGTataaaaaaat > 1:815745/1‑141 (MQ=255) aTGGTGCAAGTGTACCATCGCTTTTTTTTTTTTTTTTTTTTAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGTTATACTTTTTATACTAACTTatataaaatttga > 2:183940/1‑136 (MQ=255) gttGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTatagaaaaatagaaa < 2:479964/139‑1 (MQ=255) ggTGCAACTGTACCATCGCTTTTTTGTTTTCATCTATATAAAATTGCAACACGACTAGTTATTTTGCATTTCAAACTTTATTCTATCATTTCCTTTTCTTTTCTGGTCTACTTTTTATACTAACTGatagaaaaatagaaa > 2:316297/1‑141 (MQ=255) ggTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTttaaaaaactagaaa > 1:298469/1‑141 (MQ=255) aaccttACCATCGCTTTTTTGTTCTCAACAAAATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATATTTTTTATTCTAACTTATAGAAAAAAAAAAAAagag < 2:459731/136‑1 (MQ=255) aCTGTACCATCGCTTTTTTGTTTTTTTCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATACaaaaatagaaaaatagc > 2:303724/1‑140 (MQ=255) aCTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAgg > 1:129707/1‑141 (MQ=255) tGTACCATCGCTTTTTTTTTTTTTTTTTTATAAAATTGCAAACCGACTAGTTATTTTGCATTTCAAAGTTTATGCTATCATTTCTTTTTCTTTTTTGGTATACTTGTTATACTATCTTATATATCAATAGTAACAGAGGca > 2:709321/1‑140 (MQ=255) gTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGa < 1:805902/141‑1 (MQ=255) gTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACCATATGAAATGTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGa < 1:395057/141‑1 (MQ=255) cATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTCACTTATAGAAAAATAGAAAAAGAGGCAATGCa > 2:71137/1‑141 (MQ=255) cATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTCATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCa < 2:661118/141‑1 (MQ=255) ctCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCAt < 2:483201/140‑1 (MQ=255) tCGCTTTTTTTTTTTTTTCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTTTACTTACTTATAGAAAAATAGAAAAAGAAGCGATGCATa > 2:731335/1‑141 (MQ=255) cGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATaa < 1:577423/141‑1 (MQ=255) cGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATaa < 1:673528/141‑1 (MQ=255) gCTTTTTCGTTCGCATCCATCAAAAATTGCAAAAAGACTCGTTATTATGCATTTCAACATTTATACTATCGATTCATTTTCTTTTCTGGTATACTGTGTATACTAACTGATAGAAAAATAGAAAAAGAGGCGATGCATAAt < 2:827210/141‑1 (MQ=255) ttttttGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATgg < 1:203876/141‑1 (MQ=255) tttttGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATGGc < 1:313227/141‑1 (MQ=255) tttGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATGGCAt > 1:268981/1‑141 (MQ=255) gCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATGGCATTTCACGa < 2:515680/141‑1 (MQ=255) | CGCTCGAGAAAATAATTTGAAAATTATTGCCTCATGTTCATTTGCCAAACATATGTTAGAAAAAGAAGATTCATATCAAGATGTATATCTTGGTTAAATAAATTTTGCGATGGTGCAACTGTACCATCGCTTTTTTGTTCGCATCAATATAAAATTGCAAAACGACTAGTTATTTTGCATTTCAAACTTTATGCTATCAATTCATTTTCTTTTCTGGTATACTTTTTATACTAACTTATAGAAAAATAGAAAAAGAGGCGATGCATAATGGCATTTCACGA > CP000730/2657432‑2657712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |