| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 2,610,079:1 | (T)7→8 | 100% | coding (447/795 nt) | USA300HOU_2473 ← | lipoprotein | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,610,072 | 1 | . | T | 57.4% | 108.4 / 88.4 | 54 | coding (454/795 nt) | USA300HOU_2473 | lipoprotein | 
| Reads supporting (aligned to +/- strand): ref base . (10/13); new base T (12/19); total (22/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
ACATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAC  >  CP000730/2609933‑2610205                                                                                                                                             |                                                                                                                                       aCATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTACTATCTTTAAAGGTGCCATAGTGTACAAAGAACTTAAAGTTTTCAATc‑tc‑t                                                                                                                                        >  1:340045/1‑141 (MQ=255)aCATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATc‑tc‑t                                                                                                                                        >  1:704951/1‑141 (MQ=255) cATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑tt                                                                                                                                       <  2:578802/141‑1 (MQ=255) cATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑tt                                                                                                                                       <  1:681185/141‑1 (MQ=255)     ataATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t                                                                                                                                  >  2:98608/1‑141 (MQ=255)       aaTCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑tt                                                                                                                               >  1:684931/1‑140 (MQ=255)        atcatcATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑tta                                                                                                                              >  1:747815/1‑139 (MQ=255)          catcatTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑ttaat                                                                                                                            >  2:135609/1‑137 (MQ=255)             catTATTCAATTGATACTTTGCCGAATAACTTGGTACATTACGATTATATGAAATATCACCATCTTTATAATCCTTAATATCTCTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑ttcacttg                                                                                                                         <  2:341887/141‑8 (MQ=14)              attattCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTc                                                                                                                        <  1:21242/141‑1 (MQ=255)                  ttCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACACAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCCtt                                                                                                                     >  1:708034/1‑141 (MQ=255)                   tCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑TGTAACTTGTCATTc                                                                                                                    >  1:690855/1‑141 (MQ=255)                   tCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCg                                                                                                                   >  2:65610/1‑141 (MQ=255)                   tCAATTGATACTTCGCCGAATAACTTGGTACTTTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTc                                                                                                                    <  1:592367/141‑1 (MQ=17)                      aTTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTa                                                                                                                <  2:335259/141‑1 (MQ=255)                        tGAAATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAg                                                                                                               <  2:309517/141‑1 (MQ=255)                         gATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGt                                                                                                              <  1:597805/141‑1 (MQ=255)                          atatTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTg                                                                                                             <  1:418870/141‑1 (MQ=255)                              tttGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTc                                                                                                        <  2:347475/141‑1 (MQ=255)                               ttGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAATGCACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTc                                                                                                        <  2:284649/141‑1 (MQ=255)                                    gAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGt                                                                                                  >  1:612961/1‑141 (MQ=255)                                     aaTAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTa                                                                                                 <  2:287876/141‑1 (MQ=255)                                      aTAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATGCGGTGGTGGCTTCGTTGGttt                                                                                                >  1:83161/1‑139 (MQ=255)                                       tAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGAATg                                                                                               >  2:222122/1‑141 (MQ=255)                                              gTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGATATGAttttt                                                                                         >  1:762843/1‑140 (MQ=255)                                                  aTTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TA‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATg                                                                                    >  1:257479/1‑141 (MQ=255)                                                         ttATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAt                                                                              <  2:240502/141‑1 (MQ=255)                                                           atatGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAttt                                                                            <  1:654913/141‑1 (MQ=255)                                                             atGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAttttt                                                                          <  2:504651/141‑1 (MQ=255)                                                                aaaTATCACCATCTTTATGATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTAcc                                                                       <  1:161842/141‑1 (MQ=255)                                                                      cACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCACTC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATAc                                                                 <  1:682955/141‑1 (MQ=255)                                                                       aCCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATAcc                                                                >  2:312122/1‑141 (MQ=255)                                                                               tataATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTtca                                                        <  1:173028/141‑1 (MQ=255)                                                                                ataATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTtctt                                                       >  2:278060/1‑139 (MQ=255)                                                                                     taTTAATATCGTTAAAGTTGCCATTTTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATcc                                                  <  2:230068/140‑1 (MQ=255)                                                                                        tAATATCTTTAAAGTTGCCATTTTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTg                                              <  2:699927/141‑1 (MQ=255)                                                                                        tAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTg                                              <  2:700324/141‑1 (MQ=255)                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTTTTCTTTCTTTGTTCt                                          >  2:737715/1‑141 (MQ=25)                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCt                                          >  2:737707/1‑141 (MQ=255)                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCt                                          >  2:87205/1‑141 (MQ=255)                                                                                               tttAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTTTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGc                                        >  2:663236/1‑141 (MQ=255)                                                                                                 tcaaGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGt                                     <  2:294636/139‑1 (MQ=255)                                                                                                  aaaGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGt                                     <  1:488764/141‑1 (MQ=255)                                                                                                    aGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTa                                   >  1:752097/1‑141 (MQ=255)                                                                                                    aGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTa                                   <  1:242631/141‑1 (MQ=255)                                                                                                               tGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTGTTCCGTTCCATCTCTACCTTAGACCTTTTCTCATCATCCTTTGGTCTGCCGTTActgtcatctgt                        <  2:166298/141‑1 (MQ=25)                                                                                                               tGTAAAAAGAACTTAAAGTTTTCAATC‑TTTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTActgtcatctgt                        <  2:106713/141‑1 (MQ=255)                                                                                                                       gAACTTAAATTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCAc                <  1:98608/141‑1 (MQ=255)                                                                                                                       gAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACCTCTCAATCCGTAGTTGCTGCCTTGGTATGATTTTATTATGTGCCATTTGTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACt               <  2:542478/141‑1 (MQ=255)                                                                                                                       aaaCTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTTTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTActgtcatctgccctctctcg               <  2:398918/140‑11 (MQ=255)                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTTTTTTTTTTTTGGTCTGCCATTTCTGTCTTCTGTCTTTTCTCtt              >  2:546373/1‑141 (MQ=25)                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACtt              <  1:657069/141‑1 (MQ=255)                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTAGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCCTTTCACtt              >  2:180571/1‑141 (MQ=255)                                                                                                                         aCTTAAAGTTTTCAATC‑TC‑TTTTTCG‑TAACTTTTCAATTGGTCGACCAATCCTTGTTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACtt              <  1:569764/141‑1 (MQ=255)                                                                                                                          cTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATAATCCTTTGGTCTGCCGTTACTGTCATCTGTCTTTTCACttt             >  1:657128/1‑140 (MQ=255)                                                                                                                           ttAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTtat            >  1:270704/1‑141 (MQ=255)                                                                                                                            tAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTtata           >  1:518591/1‑141 (MQ=255)                                                                                                                             taaGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaa          <  2:67978/140‑1 (MQ=255)                                                                                                                             aaaGTTTTCAATCTTT‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaa          <  2:658932/141‑1 (MQ=255)                                                                                                                             aaaGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCCTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaaa         >  1:422993/1‑141 (MQ=255)                                                                                                                              accttttCAACT‑CC‑TTTTT‑T‑TACCTTGTCATTCGGTAGTGGTCTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCAGCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaaaa        <  1:222122/138‑1 (MQ=255)                                                                                                                                   ttCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCTTTTGATCTGCCGCTACTGTCACCGGTCATTCCACGTCTAAaatata    >  2:55719/1‑139 (MQ=255)                                                                                                                                    tCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAc  <  2:612961/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                       ACATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAC  >  CP000730/2609933‑2610205 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |