New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2085296 =71 (1.090)13 (0.220) 10/232 NT 19.5% intergenic (‑558/‑400) mapW2/USA300HOU_1944 cell surface protein MapW2/hypothetical protein
?CP000730 = 2128343 44 (0.760)intergenic (+57/+1062) int/USA300HOU_2011 bacteriophage integrase/possible leukocidin subunit

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT  >  CP000730/2085156‑2085433
                                                                                                                                            |                                                                                                                                         
ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgtagttataacggttctat                                                                                                                                           <  2:122160‑M1/1‑1 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggccaaaaaaacaaccaaaattttacaaaggatgtaatctacggacccattagggactccaaacccaataaatactgttgttacacggtatctaTGt                                                                                                                                         <  2:674404‑M1/3‑1 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                         <  1:551720‑M1/3‑1 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                         <  2:722288‑M1/3‑1 (MQ=255)
   acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaacaactagaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaagggttctaTGTa                                                                                                                                        <  2:249717‑M1/4‑1 (MQ=255)
    atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                       <  1:644764‑M1/5‑1 (MQ=255)
    aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt                                                                                                                                       >  1:359907/1‑141 (MQ=255)
         tGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCaaa                                                                                                                                  <  1:132006/141‑1 (MQ=255)
          gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                 <  1:669705‑M1/11‑1 (MQ=255)
          gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc                                                                                                                                 >  2:638862/1‑141 (MQ=255)
          gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc                                                                                                                                 >  2:426510/1‑141 (MQ=255)
            aaCACCTGAATTAGTCAATTTATTATTAGTTGGTGCACTTACTAACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTg                                                                                                                               <  1:571639/141‑1 (MQ=255)
               acTTGCATTAGCAAATTTATTATTTGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGTTACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTGTGTATCCAAACTGgag                                                                                                                            <  1:393362/141‑1 (MQ=255)
               acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGCCAATAGTGCCAAAGCCGAATCTCAGAATGTTGATACTGATTTGTTGCTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  1:379028/141‑1 (MQ=255)
               acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACATTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  2:405944/141‑1 (MQ=255)
               acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  1:744854/141‑1 (MQ=255)
                 ttGCATTAGGAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTgggggc                                                                                                                          <  2:40746/141‑5 (MQ=255)
                     tgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtttt                                                                                                                      <  1:21106‑M1/22‑1 (MQ=255)
                     aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                      >  1:709023/1‑141 (MQ=255)
                          gaaaTGTAATAGTAGTTGGTGCACGTACTGACAATAGTGCCAAAGCTGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTTGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGTCTTTTAACAt                                                                                                                 <  2:220258/140‑1 (MQ=255)
                          cAAATTTATTATCAGTTGGTGCACTTACTGACAATAGTGCCAAATCCGAATCTAAAAAAAATGATACTGATTTTAAGGTAGTTAGTCATACCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                 <  2:86164/141‑1 (MQ=255)
                              tttATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaaaa                                                                                                             <  2:582361/141‑1 (MQ=255)
                                aaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatggaatgtagggacccattagggactccaaacccaataaatactggtgttacaagctttctaTGTATCCAAACTGGAGACTTTTAACATAAAAtt                                                                                                           >  2:2935‑M1/109‑141 (MQ=255)
                                  ttattaGTTGGGCCACTTACTGCCATTATTGGCAATGCCGAATCTAAGAATGATGTTACTGATTTGAAGTTAGTTAGTTATACCTTTTATATGTTATCGTCCGTGTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                         <  2:254050/141‑1 (MQ=255)
                                  atattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCTAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                         <  2:254055/140‑1 (MQ=255)
                                     taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                      <  1:597627‑M1/38‑1 (MQ=255)
                                     taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                      <  1:390619‑M1/38‑1 (MQ=255)
                                       aGTTGGTGCACGTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                    <  2:454600/141‑1 (MQ=255)
                                            gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCa                                                                                               >  1:722288‑M1/97‑141 (MQ=255)
                                             tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                              >  1:601625/1‑141 (MQ=255)
                                                acaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                           >  1:543692‑M1/93‑141 (MQ=255)
                                                aCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                           >  2:213294/1‑141 (MQ=255)
                                                 caaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                          >  1:486372‑M1/92‑141 (MQ=255)
                                                  ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                         >  1:322540/1‑141 (MQ=255)
                                                   tACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAGTTACATATCATTCAAAAAGTa                                                                                        <  1:405790/141‑1 (MQ=255)
                                                     cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACCTGGCGACTTTTAACCTAAAATTACTTATCATTAACAAAGTgaa                                                                                      >  1:117735/1‑141 (MQ=255)
                                                        aCAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGATAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                   >  2:561102/1‑141 (MQ=255)
                                                            tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:63373/141‑1 (MQ=255)
                                                            tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:228262/141‑1 (MQ=255)
                                                            tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:247524/141‑1 (MQ=255)
                                                            aaGTGCTAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTGAAACGGGAGCTTTCCGACAGAGAAGTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:778454/140‑1 (MQ=255)
                                                               tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                            <  1:639447/141‑1 (MQ=255)
                                                                 ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                          <  1:649639/141‑1 (MQ=255)
                                                                    aaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAACAAGTAAAACAGCATAATATCaa                                                                       <  1:612552/141‑1 (MQ=255)
                                                                      gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATTACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     <  2:694183/141‑1 (MQ=255)
                                                                      gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     >  1:369244/1‑141 (MQ=255)
                                                                      gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     <  2:602774/141‑1 (MQ=255)
                                                                       ccGAATCTGAGAAAGATGATACTGACTTGAAGTTAGTTAGTCATAACGTTTATATGTTATGGACCGTTTTGTATCCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAACACAGCATAATATCCAGGt                                                                    >  2:275268/1‑141 (MQ=255)
                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAGCATAAAATTACTTATCATTCAAAAAGTAAAACAGCTTAATATCAAGGt                                                                    >  1:20514/1‑141 (MQ=255)
                                                                       ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                    <  2:765973/141‑1 (MQ=255)
                                                                       ccGAATCGAAGAAAGGTGATAGTGGTTTGAGGTTAGTTAGTCATAACGTTTATATGTTATCGACCGAGTTGTATCCAAACTGGGGGCTTGTAACATAAAATTTCTTATCATTCAAAAAATAAAACAGCCTAATATAGAGGt                                                                    >  2:221051/1‑141 (MQ=255)
                                                                         gAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt                                                                  >  2:367666/1‑141 (MQ=255)
                                                                         gAATCTAAGAAAGATAATACTGCACTTAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATAACAAGGttt                                                                  >  1:190188/1‑141 (MQ=255)
                                                                          aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAACGTAACACACCATAATATTAAGGttga                                                                 >  2:670368/1‑139 (MQ=255)
                                                                          aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                 >  2:612536/1‑141 (MQ=255)
                                                                           gtatgtaatttagggccccattagggactccaaacccaatacatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                >  2:325853‑M1/66‑141 (MQ=255)
                                                                           aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                <  2:405179/141‑1 (MQ=255)
                                                                               aagaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                            >  2:174942/1‑141 (MQ=255)
                                                                                 gaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACttt                                                          <  2:477694/141‑1 (MQ=255)
                                                                                  aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                         <  2:516763/141‑1 (MQ=255)
                                                                                  aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                         >  1:446021/1‑141 (MQ=255)
                                                                                        gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattt                                                   >  1:9344/1‑140 (MQ=255)
                                                                                        gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                   >  2:80632/1‑141 (MQ=255)
                                                                                          tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                 <  1:26776/141‑1 (MQ=255)
                                                                                             cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                              >  1:44749‑M1/48‑141 (MQ=255)
                                                                                              gATTTGAAGTTAGTTAGGCAGAACGTTTATATGTCATCGACCCTTTTGTACCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATCTCAAGGTTTATAACTTTATCATTATCaata                                             >  2:580080/1‑141 (MQ=255)
                                                                                                tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                           <  1:446409‑M1/97‑1 (MQ=255)
                                                                                                cagggaccccaaacctgataagttctgttgttacaaggtttctaTGTATCCAAACAGGAGAATTTTAGCATAAAATTACTTATCATTCAAAAAGTACAACAGCATAATATCAAGGATTATAACTTTATCATTATCaataat                                           <  2:311599‑M1/97‑1 (MQ=255)
                                                                                                  tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                         <  1:213294/141‑1 (MQ=255)
                                                                                                     agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc                                      <  2:444725/141‑1 (MQ=255)
                                                                                                     agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc                                      <  2:653146/141‑1 (MQ=255)
                                                                                                      gttagttaGTCATAACGATTATATGTGATCGACCGTTTTGTATCCAAACTGGAGACTTGGAACATAAAATTACGTAGCATGCAAAAAGTAAAACAGCATAATATCAAGGTAGATAACTTTATCATGAGCAAAAAGACCTCa                                     >  1:271937/1‑141 (MQ=255)
                                                                                                               tCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                            >  1:222661/1‑141 (MQ=255)
                                                                                                                   aaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  2:15862‑M1/26‑141 (MQ=255)
                                                                                                                   aaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  2:682029‑M1/26‑141 (MQ=255)
                                                                                                                   aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  1:35539/1‑141 (MQ=255)
                                                                                                                   aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        <  1:426510/141‑1 (MQ=255)
                                                                                                                   aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGTTTATAACTTTATCATTATCAATAAAACATACTATaaaataaaat                        >  2:576434/1‑141 (MQ=255)
                                                                                                                      gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                     >  1:241979/1‑141 (MQ=255)
                                                                                                                      atttccacgTTATTGACCGTTTTGTATCCAAACTGGAAACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                     <  2:354834/133‑1 (MQ=255)
                                                                                                                       tttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACTTAATCTAAAATAAAAtttta                    >  1:712029/1‑141 (MQ=255)
                                                                                                                        ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                   >  2:705263/1‑141 (MQ=255)
                                                                                                                        ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                   >  1:473945/1‑141 (MQ=255)
                                                                                                                         tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATATTATCACATATAAAATAAAAttttagg                  <  2:761163/141‑1 (MQ=255)
                                                                                                                         tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                  <  2:709023/141‑1 (MQ=255)
                                                                                                                           tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                >  2:300368/1‑141 (MQ=255)
                                                                                                                           tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                >  2:426570/1‑141 (MQ=255)
                                                                                                                            atGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCCCATATACAATAAAAtttcagggac               >  2:99735/1‑141 (MQ=255)
                                                                                                                                    gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg       <  1:9652/141‑1 (MQ=255)
                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  2:531108/1‑141 (MQ=255)
                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  1:243003/1‑141 (MQ=255)
                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  2:638290/1‑141 (MQ=255)
                                                                                                                                       cGTTTTGTATCCAAACTGGAGCCTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGTTTATAACATTATAATTATCAATAATAGCTCATATAAAAAAAAAatttaggagcgttttagggcc    >  2:121620/1‑139 (MQ=255)
                                                                                                                                       cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac    >  2:143267/1‑141 (MQ=255)
                                                                                                                                         ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  <  1:21354/141‑1 (MQ=255)
                                                                                                                                         ctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  >  2:21106‑M1/4‑141 (MQ=255)
                                                                                                                                         ctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  <  2:634316‑M1/138‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT  >  CP000730/2085156‑2085433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.