| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 35,817 | A→T | 33.4% | intergenic (+48/+60) | USA300HOU_0025 → / ← USA300HOU_0026 | hypothetical protein/IS431mec transposase | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 35,817 | 0 | A | T | 33.4% | 203.4 / 110.6 | 131 | intergenic (+48/+60) | USA300HOU_0025/USA300HOU_0026 | hypothetical protein/IS431mec transposase | 
| Reads supporting (aligned to +/- strand): ref base A (45/41); new base T (12/31); total (58/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.13e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.56e-01 | |||||||||||
Only 100 of 133 total aligned reads displayed.
GCAAATTATTCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATA  >  CP000730/35677‑35956                                                                                                                                            |                                                                                                                                            gCAAATTATTCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGaa                                                                                                                                              >  2:437220/1‑141 (MQ=255)   aaTTATTCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGt                                                                                                                                           <  1:267187/141‑1 (MQ=255)      tattTTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCt                                                                                                                                        <  1:338657/141‑1 (MQ=255)      tattCTGAATTTAAAGCTGTAGATGATCGCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCt                                                                                                                                        <  1:212650/141‑1 (MQ=255)       attCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCtt                                                                                                                                       >  1:176369/1‑140 (MQ=255)       attCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTg                                                                                                                                       >  1:593046/1‑141 (MQ=255)        ttCTGAATTTAAAGGTGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGTAAAATGATTACTAGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTATGt                                                                                                                                      >  2:540370/1‑141 (MQ=255)          cTGAATTTAAAGATGAAGATGATCTCATTGACAAAGTATTTACTGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTg                                                                                                                                    >  1:398652/1‑141 (MQ=255)             aaTTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAGGGTTATGTTGCaa                                                                                                                                 >  1:3718/1‑141 (MQ=255)                ttAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGt                                                                                                                              <  2:196470/141‑1 (MQ=255)                ttAAAGATGTAGATGATCTCATTGACAAAGTAGTTAATGTAGAAGCTATCCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGt                                                                                                                              <  2:339395/141‑1 (MQ=255)                 tAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑a                                                                                                                            >  2:487632/1‑141 (MQ=255)                   aaGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑aaa                                                                                                                          >  1:192642/1‑141 (MQ=255)                    aGATGTAGATGATCTCATTGACAAAGTATCTAATGTAGAGGCTATCAAGTATACAGATTTCGGCGAAAACTGATTCCTTGAACAAGAGCTCAAATAAGATTGCAATCTAATAAAACTAGAAGGTGCTGTTGCAAATT‑aaaa                                                                                                                         >  2:733759/1‑141 (MQ=255)                     gATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑aaaaa                                                                                                                        <  1:641525/141‑1 (MQ=255)                      aTGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑aaaaaa                                                                                                                       >  1:507431/1‑141 (MQ=255)                          aGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAatat                                                                                                                   <  1:385741/141‑1 (MQ=255)                           gatgatCTCATTGAAAAAGTATTTAATGTAGAAGCTACTCTGTTTCTTGTTCTTCCGGGTTAAAAAGTACTTGCAGACCAGCTAAAACAAAATATAAATCTAATAAAAATAGAAGGTTCTGAAAAAAAAA‑AAAAAAAtata                                                                                                                  <  2:166054/141‑1 (MQ=255)                            atgatCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAg                                                                                                                 <  1:96373/141‑1 (MQ=255)                            atgatCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAg                                                                                                                 <  1:136977/141‑1 (MQ=255)                                   cATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCa                                                                                                          >  2:710398/1‑141 (MQ=255)                                    aTTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCAc                                                                                                         >  1:322350/1‑141 (MQ=255)                                    aTTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCAc                                                                                                         >  1:328275/1‑141 (MQ=255)                                    aTTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCAc                                                                                                         >  1:773262/1‑141 (MQ=255)                                     ttGACAAAGTATTTAATGTAGAAGCTAGTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACt                                                                                                        <  2:306001/141‑1 (MQ=255)                                          aaaGTAATTAAGCTTGAAGCTATTCAGTATAAAGGTGTCGTCCAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAACTAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAAttt                                                                                                   <  1:163459/141‑1 (MQ=37)                                            aGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTTAACGAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTAt                                                                                                 >  1:183015/1‑141 (MQ=255)                                            aGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTAt                                                                                                 >  1:348197/1‑141 (MQ=255)                                               aTTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCAt                                                                                              <  1:174987/141‑1 (MQ=255)                                                tttAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATg                                                                                             >  1:61814/1‑141 (MQ=255)                                                 ttAATGTAGAACTGATTCATTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGt                                                                                            <  1:519346/141‑1 (MQ=255)                                                   aaTGTAGAAGCTATTCAAGATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAATATTGTGATCTAATAAAAATAGAAGGTTATGTTGCAAAAT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCa                                                                                          >  2:182925/1‑141 (MQ=38)                                                       tAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAgtgt                                                                                      <  1:184733/141‑1 (MQ=255)                                                          aaGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCg                                                                                   >  1:715998/1‑141 (MQ=255)                                                           aGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAACATAGAAGGTTCTGAAAAAAAAA‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGc                                                                                  <  2:448134/141‑1 (MQ=38)                                                           aGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGc                                                                                  <  2:144333/141‑1 (MQ=255)                                                           aGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACCTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAACACAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGc                                                                                  <  2:55759/141‑1 (MQ=255)                                                             cTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCtt                                                                                >  1:432990/1‑141 (MQ=255)                                                             cTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCtt                                                                                >  2:417709/1‑141 (MQ=255)                                                               aTTCAGTATAAAGTTTTTGGAGAAAAATGATTACTTGAACAAGATCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGGTGCAAAGTAAAAAAAATATATGTAACCACTAATTTATCTTGTCATTGTTCGCTTa                                                                               >  2:433780/1‑141 (MQ=255)                                                                  taGTATAAAGTTTTTGGCGAAAAATGATTACTTGAATAAGATTTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACtt                                                                           <  2:80172/140‑1 (MQ=255)                                                                  cAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACtt                                                                           >  2:718520/1‑141 (MQ=255)                                                                    gTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGc                                                                         >  1:546589/1‑141 (MQ=255)                                                                     tataAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTCCTGTTGCAAAGT‑ACAAAAATATAGCTAACAACTAATTTATCATGTCAGTGTTCGCTTAACTTGCt                                                                        >  2:255557/1‑141 (MQ=255)                                                                       taAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTCACTTGCTAg                                                                      >  1:772572/1‑141 (MQ=255)                                                                           gTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATTAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCatg                                                                  >  1:499625/1‑141 (MQ=255)                                                                              tttGGCGAAAAATGACTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCatgatg                                                               <  2:281577/141‑1 (MQ=255)                                                                              tttGGCGAAAAAACATTACGTGAACAAGAGCTAAAATAAAGTTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCatgatg                                                               <  1:424521/141‑1 (MQ=255)                                                                                   cGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAAt                                                          >  2:376201/1‑141 (MQ=255)                                                                                                 ttGAATCAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCg                                            <  1:1260/141‑1 (MQ=255)                                                                                                    aaCAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGaaa                                         >  2:164649/1‑141 (MQ=255)                                                                                                        agagCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATcc                                     <  2:675726/141‑1 (MQ=255)                                                                                                                 acaaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGaa                          >  1:67117/15‑141 (MQ=11)                                                                                                                 acaaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGaa                          >  2:686909/15‑141 (MQ=11)                                                                                                                  caaaagagtatcttaataaAAAT‑GAGGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAag                         <  1:690303/128‑1 (MQ=11)                                                                                                                  aaaaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGGTAGTCACTAATATATCCTGTCAGTGTGCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAACTCCGTAGATCTGAag                         <  2:398604/128‑1 (MQ=11)                                                                                                                    aaagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAagag                       >  1:473655/12‑141 (MQ=11)                                                                                                                    aaagactattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTCTCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAagag                       <  1:378872/130‑1 (MQ=11)                                                                                                                     aagagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCAGGGCGAAAATCCGTAGATCTGAAgaga                      >  1:477332/11‑141 (MQ=11)                                                                                                                      agagtattttaataaAAATTG‑TGGTTCTGTTGCCAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:10018/132‑1 (MQ=11)                                                                                                                      agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTGATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGAAATTCTGAAAATCCGTAGATCTGAAGAGAc                     <  2:522131/132‑1 (MQ=11)                                                                                                                      agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:150579/132‑1 (MQ=11)                                                                                                                      agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  2:780424/132‑1 (MQ=11)                                                                                                                      agagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  1:11685/132‑1 (MQ=11)                                                                                                                       gattattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  1:251949/133‑1 (MQ=11)                                                                                                                       gagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTGATCACTAATATATCATGTCAGTGTTCGTTTAACGTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  2:514734/133‑1 (MQ=11)                                                                                                                       gagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  2:93793/133‑1 (MQ=11)                                                                                                                       gagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  1:365719/133‑1 (MQ=11)                                                                                                                       gagtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  1:192050/133‑1 (MQ=11)                                                                                                                        tgtgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  1:122288/141‑1 (MQ=255)                                                                                                                        tgtgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     <  1:329543/141‑1 (MQ=255)                                                                                                                        tgtgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAc                     >  1:398352/1‑141 (MQ=255)                                                                                                                        ggtgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGC‑AAAAACATATAGCTAACCACTAATTTATCATGTCAGTCTTCGCTTAACTTGCTAGCATGATGCTAATCTCGTGGCATGGCGAAAATCCGTGAATCTGCAGCGAc                     >  2:588483/2‑141 (MQ=14)                                                                                                                        agtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGGTCTTAGGAGACCt                   >  2:509622/8‑141 (MQ=11)                                                                                                                        agtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:572424/134‑1 (MQ=11)                                                                                                                        agtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:572279/134‑1 (MQ=11)                                                                                                                        agtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:439740/134‑1 (MQ=11)                                                                                                                        agtattttaataaAAAT‑GATGGTTCTGGTGCAAAGT‑‑AAAAAATATAGCTAACCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGTTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:143336/134‑1 (MQ=11)                                                                                                                        agtattttaataaAAAT‑GATAGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   >  1:476811/8‑141 (MQ=11)                                                                                                                         gtgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGAcc                    <  2:87037/141‑1 (MQ=255)                                                                                                                         gtattttgataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTg                  <  2:751393/133‑1 (MQ=11)                                                                                                                         gtattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTg                  <  1:563105/135‑1 (MQ=11)                                                                                                                          tgATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCt                   <  2:244772/141‑1 (MQ=255)                                                                                                                          tattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 <  1:702764/136‑1 (MQ=11)                                                                                                                          tattttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 >  2:415452/6‑141 (MQ=11)                                                                                                                          tattttaagaaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCCAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGc                 <  1:224420/136‑1 (MQ=11)                                                                                                                            ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTGACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAtgaggactgagg               >  1:58427/4‑133 (MQ=11)                                                                                                                            ttttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  1:687879/138‑1 (MQ=11)                                                                                                                             tttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGt              <  2:770750/139‑1 (MQ=11)                                                                                                                             tttaataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGt              <  1:565648/139‑1 (MQ=11)                                                                                                                             tttaataaAAAT‑GATGGTGCTGTTGCAAAGT‑‑AAAAAATATAGCTCATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGt              <  2:687952/139‑1 (MQ=11)                                                                                                                              ataataaAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCgg               <  2:397519/140‑1 (MQ=40)                                                                                                                               taataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAATTCCGTAGCTCTGAAGAGACCTGCGGTTc            <  1:510990/141‑1 (MQ=11)                                                                                                                                 ataaAAAT‑GATGGTTCTGTTGCAAAGT‑‑AAAAAATATAGCTAATCACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCtt          >  1:322063/1‑141 (MQ=11)                                                                                                                                   aaaaaTAGAAGGTTCTGTTGCAAAGT‑AAAAAAATGTGAATAACCACTTATTACAGATTCCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCtt          >  1:186228/1‑141 (MQ=11)                                                                                                                                    aaaaTAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCttt         <  2:307313/141‑1 (MQ=35)                                                                                                                                     aaaTAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCtttt        >  1:93595/1‑141 (MQ=35)                                                                                                                                      aaTAGGAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCGGTAGTGCTGAAGAGTCCTGCGGTTCttttt       <  2:398652/141‑1 (MQ=11)                                                                                                                                          gAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGCGACCTGCGGTTCTTTTtatat   >  2:352035/1‑141 (MQ=14)                                                                                                                                           aaGGTTCTGTTGCAAAGT‑AACAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGCAAATCCGTAGAGCTGAAGAGACCTGGGGTTCTTGTtatata  >  1:633601/1‑141 (MQ=11)                                                                                                                                            |                                                                                                                                            GCAAATTATTCTGAATTTAAAGATGTAGATGATCTCATTGACAAAGTATTTAATGTAGAAGCTATTCAGTATAAAGTTTTTGGCGAAAAATGATTACTTGAACAAGAGCTAAAATAAAATTGTGATCTAATAAAAATAGAAGGTTCTGTTGCAAAGT‑AAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATA  >  CP000730/35677‑35956 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |