| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2660570 = | 108 (1.180) | 3 (0.040) | 3/236 | NT | 3.0% | intergenic (+12/+237) | ddh/USA300HOU_2514 | D‑lactate dehydrogenase/HAD superfamily hydrolase |
| ? | CP000730 | 2660603 = | 97 (1.160) | intergenic (+45/+204) | ddh/USA300HOU_2514 | D‑lactate dehydrogenase/HAD superfamily hydrolase | |||||
ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2660720‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > CP000730/2660603‑2660742 ataTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:95652/138‑1ATCTCAAACTGGTTAGGCAATAATGCCAGAGTAAAATAAGCGCACTAACATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:1054404/141‑1ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGACTAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:916181/141‑1ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC < 1:180858/141‑1 taTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCC < 2:596278/139‑1 CAAACAGGTTAGGCAATAATGCTATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATCTACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:765734/141‑1 CAAACAGGTCAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATGTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:615457/141‑1 AACAGGTTAGGCAATAATGCGATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAATAGCAAAGGCACATGGCGCGCCTTTGC > 1:667552/1‑141 ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCT < 2:769726/141‑1 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGGGCCTTTGCTTT > 1:1019007/1‑141 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT < 2:530972/141‑1 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT > 2:261846/1‑141 TGCCATAGTAAAATAAGCGCAGTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTGTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATC < 2:1004366/141‑1 AATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTA < 1:756529/141‑1 AAGGCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGA > 2:628337/1‑141 agacaagttCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATt > 2:678614/10‑140 GCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 2:996609/141‑1 CTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTG < 2:279276/141‑1 TTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGA < 2:614823/141‑1 TTTGATTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAACCCGCTTTATTTCATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGA < 1:997536/141‑1 TTTTTATTTTGTATAACAGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTAGTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATT < 1:877274/141‑1 TTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > 1:426715/1‑141 ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2660720‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > CP000730/2660603‑2660742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |