New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2085296 =62 (0.680)63 (0.770) 48/232 NT 48.0% intergenic (‑558/‑400) mapW2/USA300HOU_1944 cell surface protein MapW2/hypothetical protein
?CP000730 = 2128343 81 (0.990)intergenic (+57/+1062) int/USA300HOU_2011 bacteriophage integrase/possible leukocidin subunit

Only 100 of 174 total aligned reads displayed.

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAA  >  CP000730/2085156‑2085436
                                                                                                                                            |                                                                                                                                            
ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactcaaaacccaataaatactgttgttacaaggtttctat                                                                                                                                              <  2:296367‑M1/1‑1 (MQ=255)
aaaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTT                                                                                                                                              >  2:344612‑M1/1‑141 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  1:312478‑M1/3‑1 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            >  1:620322‑M1/139‑141 (MQ=255)
  acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  2:102031‑M1/3‑1 (MQ=255)
  acatccatgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaagaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                            <  2:694606‑M1/3‑1 (MQ=255)
     tccgtgtattctcatttgttagaagaaaaatttaatgaagaggacgaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATc                                                                                                                                         <  2:487210‑M1/6‑1 (MQ=255)
      ccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggatcccggatttactccaaacccactaaatactgttgttacaaggtttctaTGTATcc                                                                                                                                        <  1:1037356‑M1/7‑1 (MQ=255)
      ccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATcc                                                                                                                                        <  1:843864‑M1/7‑1 (MQ=255)
      ccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATcc                                                                                                                                        <  1:778203‑M1/7‑1 (MQ=255)
        gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                      >  1:396448‑M1/133‑141 (MQ=255)
        gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                      <  2:669080‑M1/9‑1 (MQ=255)
        gtgtaatctcatttgttagaagaaaaatttaatgaagaagacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                      >  2:574425‑M1/133‑141 (MQ=255)
        ctgtattctcatttgttagaagaaaaatttaatcaagaggacaaaaaaacaactacaattttagaaagtatgtaatttagggacccattagggacttcaaacccaataaatactgttgttgcaaggtttctaTGTATCCaa                                                                                                                                      >  2:605107‑M1/133‑141 (MQ=255)
         tgttttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccactagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                     <  2:958911‑M1/10‑1 (MQ=255)
         tgtattctcatttgttagaagaaaaatttaatgaagaggaccaaaaaacacctaaaattttagaaagtctgtaattgagggacccattagggaatccaaacccaataaatactgttggtacaaggtttctcTGTATCaaaa                                                                                                                                     <  2:54254‑M1/10‑1 (MQ=255)
           tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                   <  2:632058‑M1/12‑1 (MQ=255)
            attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactcccaacccagtaaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                  <  1:748693‑M1/13‑1 (MQ=255)
             ttctcatttgttagaagaaaaatttaatgaagaggacaaacaagaatgtagaattttagaaagtatgtaatttagggacccattagcgactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTgg                                                                                                                                 <  1:484805‑M1/14‑1 (MQ=255)
              tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                                <  1:883188‑M1/15‑1 (MQ=255)
              tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                                <  2:14326‑M1/15‑1 (MQ=255)
                 catttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACAggagaa                                                                                                                             <  2:937508‑M1/18‑2 (MQ=255)
                       tAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatata                                                                                                                       >  1:951356‑M1/1‑131 (MQ=255)
                        tagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAAc                                                                                                                      >  2:357357‑M1/117‑141 (MQ=255)
                        atcAAATTTATTAGTAGTTTGTGCACTAACCGACAAGAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAc                                                                                                                      <  2:841444/139‑1 (MQ=255)
                         agaagaaaaatttaatgaagaggacaaaaaaacacctaaaattttagaaagtatgtaatttagggaaccataaggcgctacaaacccaataaaaactgttgttataagatttctaTGTATCCAAACTGGAGACATTTAACa                                                                                                                     <  2:877798‑M1/26‑1 (MQ=255)
                         agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                     >  1:453544‑M1/116‑141 (MQ=255)
                         agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTATATCCAAACTGGAGACTTTTAACa                                                                                                                     <  2:610392‑M1/26‑1 (MQ=255)
                            agaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                  <  1:69459‑M1/29‑1 (MQ=255)
                            aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                  >  1:850424/1‑141 (MQ=255)
                            aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                  <  2:563180/141‑1 (MQ=255)
                            aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                  <  1:168895/141‑1 (MQ=255)
                             aTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaaa                                                                                                                 <  1:1076150/141‑1 (MQ=255)
                              aaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaaaa                                                                                                                <  2:273673‑M1/31‑1 (MQ=255)
                                 aatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGCCTTTTAACATAAAATTa                                                                                                             <  1:1039346‑M1/34‑1 (MQ=255)
                                  atttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                            >  2:1090555‑M1/107‑141 (MQ=255)
                                   tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACt                                                                                                           <  2:902758‑M1/36‑1 (MQ=255)
                                    ttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACtt                                                                                                          <  1:282831‑M1/37‑1 (MQ=255)
                                      aatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                        <  2:307641‑M1/39‑1 (MQ=255)
                                       acgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                       >  1:124736‑M1/102‑141 (MQ=255)
                                       aGTTGGTGCACGTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATCTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                       <  1:742362/141‑1 (MQ=255)
                                            gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCa                                                                                                  <  1:13831‑M1/45‑1 (MQ=255)
                                              ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccatgagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                                <  2:929358‑M1/47‑1 (MQ=255)
                                              gCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                                <  1:545849/141‑1 (MQ=255)
                                              gCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                                <  1:217127/141‑1 (MQ=255)
                                                 aaaaaaaacaactaaaattttagaaagtttgtaatttagggacccattagggactccaaacccaataagtactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                             >  2:416349‑M1/92‑141 (MQ=255)
                                                  ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                            <  1:433702/141‑1 (MQ=255)
                                                  ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTGTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                            >  1:793920/1‑141 (MQ=255)
                                                   aaaaaacaactaaaattttagaaagtatgtaatttagggccccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTa                                                                                           >  1:26791‑M1/90‑141 (MQ=255)
                                                    aCTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaa                                                                                          >  2:302110/1‑141 (MQ=255)
                                                      aaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggggtctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa                                                                                        <  1:978615‑M1/55‑1 (MQ=255)
                                                        acaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                      <  1:693422‑M1/57‑1 (MQ=255)
                                                         caactaaaattttagaaagtatgtcatatagggacccattagggactccaaaccaaataaatactgtagttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTCCTTATCATTCAAAAAGTAAAACAg                                                                                     <  2:510007‑M1/58‑1 (MQ=255)
                                                         caactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCACACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAg                                                                                     <  2:399910‑M1/58‑1 (MQ=255)
                                                            tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                  <  1:411499/141‑1 (MQ=255)
                                                               tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                               >  2:70861/1‑141 (MQ=255)
                                                                aattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGcataatt                                                                              <  1:905042‑M1/65‑2 (MQ=255)
                                                                aatcttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                              >  2:323861‑M1/77‑141 (MQ=255)
                                                                    aaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACAACAGCATAATATCaa                                                                          >  2:834249/1‑141 (MQ=255)
                                                                        cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                      <  1:896178/141‑1 (MQ=255)
                                                                           gtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                   >  2:244068‑M1/66‑141 (MQ=255)
                                                                            tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTGtata                                                                  >  1:514101/1‑141 (MQ=255)
                                                                                   aagaTGATACTTATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                           <  2:894538/141‑1 (MQ=255)
                                                                                       tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatga                                                       <  2:614970‑M1/141‑75 (MQ=255)
                                                                                         gacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                     <  2:262524‑M1/90‑1 (MQ=255)
                                                                                           aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACGGGAGAATTACATCATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGTTTATAACTttatcattatca                                                   >  1:808325/1‑141 (MQ=255)
                                                                                            ccattagggactccaaacccaataaatactgttgttacaacgtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaa                                                  >  1:204053‑M1/49‑141 (MQ=255)
                                                                                             tGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                 <  1:261947/141‑1 (MQ=255)
                                                                                              taTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                <  1:242677/140‑1 (MQ=255)
                                                                                              gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                <  1:795495/141‑1 (MQ=255)
                                                                                                tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                              <  1:457475‑M1/97‑1 (MQ=255)
                                                                                                tagggactccaaacccaataaatactgttgttacaaggaccctaTGTATCCAAACTGGAGACATTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAAGCTTATAACTTTATCATTATcaataaa                                              <  2:1027718‑M1/97‑2 (MQ=255)
                                                                                                   ggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAATAGCATAATATCAAAGTTTATAACTTTATcattaccaaacattac                                           <  2:264098‑M1/100‑8 (MQ=255)
                                                                                                       tccaaatccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAGATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                       >  2:823692‑M1/38‑141 (MQ=255)
                                                                                                       tccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                       <  2:609681‑M1/104‑1 (MQ=255)
                                                                                                        tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                      <  1:790061/141‑1 (MQ=255)
                                                                                                        tagttagtCATAACGTTTATATGTTATCGACCGTTTTAGATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTAGCATTATCAGTAATACCTCata                                      <  1:571953/141‑1 (MQ=255)
                                                                                                          aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCCtata                                    >  2:765724‑M1/35‑141 (MQ=255)
                                                                                                          aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                    <  1:338022‑M1/107‑1 (MQ=255)
                                                                                                          aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                    <  1:945385‑M1/107‑1 (MQ=255)
                                                                                                          aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                    >  2:288474‑M1/35‑141 (MQ=255)
                                                                                                           aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATACCTTTATCATTATCAATAATCACTCATataa                                   <  2:876979‑M1/108‑1 (MQ=255)
                                                                                                           aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa                                   <  1:622989‑M1/108‑1 (MQ=255)
                                                                                                              gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                                >  2:992717/1‑141 (MQ=255)
                                                                                                                     atactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt                         >  2:250215‑M1/24‑141 (MQ=255)
                                                                                                                      gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                        >  1:892092/1‑141 (MQ=255)
                                                                                                                        ctgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                      <  1:983574‑M1/121‑1 (MQ=255)
                                                                                                                         tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                     <  1:331899/141‑1 (MQ=255)
                                                                                                                           tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataacatacatggga                   >  1:1080941/1‑133 (MQ=255)
                                                                                                                             tGTTATCGACCGTTTTGTAACCAAACTGGACACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact                 <  2:1070104/141‑1 (MQ=255)
                                                                                                                              gtacaaggtttctaTGTATCCAAACGGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                >  1:56503‑M1/15‑141 (MQ=255)
                                                                                                                              gTTATCGACGCTTTTGTATCCCAACTGGAGTCTTTTAACATAAAATTACTTATCATTCAAAAAGAAAAACAGCATAACATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAACTAAAAttttagggactt                <  1:995994/141‑1 (MQ=255)
                                                                                                                              gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAGCAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                <  1:860162/141‑1 (MQ=255)
                                                                                                                                      ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCACTAATAGCTCAAATAAAATAAACttttggcgatattttaggga        >  1:227959/1‑141 (MQ=255)
                                                                                                                                       cGTTTTGTATCCAAAGTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac       >  1:821263/1‑141 (MQ=255)
                                                                                                                                       cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac       >  2:864456/1‑141 (MQ=255)
                                                                                                                                       cGTTTTGTATCCAAACTGGAAACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATAATCAAAACAACCTCATATAAAATAAAAtcttaggaacgttttaaggaa       >  2:163015/1‑140 (MQ=255)
                                                                                                                                       cGTTTTGTACACAAACTGGAGACTATTAACATCAATTGACAAATCATTCAAATTAAAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac       >  1:809817/1‑141 (MQ=255)
                                                                                                                                         ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt     >  2:828373/1‑141 (MQ=255)
                                                                                                                                            TGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa  >  1:344612‑M1/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAA  >  CP000730/2085156‑2085436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.