| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,574,491 | A→T | 4.5% | L1009H (CTC→CAC) | USA300HOU_1441 ← | possible bacteriophage tail protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,574,491 | 0 | A | T | 4.5% | 296.3 / 2.5 | 102 | L1009H (CTC→CAC) | USA300HOU_1441 | possible bacteriophage tail protein |
| Reads supporting (aligned to +/- strand): ref base A (45/51); new base T (2/3); total (47/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 110 total aligned reads displayed.
GCTCTTTTTCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTCT > CP000730/1574351‑1574631 | gctcttTTTCTGTCTTACTCACTTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAGATATGACCATCACTCAACGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGa > 2:256405/1‑141 (MQ=255)gctcttTTTCGGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGa > 1:801985/1‑141 (MQ=255)gctcttTTTCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCATTTCTTTGATTTTCTGATTGa > 1:736792/1‑141 (MQ=255)gctcttTTTCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGa > 2:510240/1‑141 (MQ=255)gctcttTTTCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGa > 1:689712/1‑141 (MQ=255) ctctctTTCAGTCTTACTCTATTCTTTAACAGTGCTATCACGTCTTCGATTTTCAAGCTTTTCAATTTCTTTTCTCTCATTTTCTGAAATCTGTCCATCACTCAAAGGTCTTTC‑TTTCACTTCTTTGATTTTCTGATTGAg < 2:835369/141‑1 (MQ=255) tgttgttCAGTCTTACTCCGTGCTTTAACCGTGATCTCACGTCTTTGATTTTCAAGCTTTTTAATTTTTTTTCTGTCATTTTCTGCTATCTGCCCAGCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGt < 2:422297/136‑1 (MQ=255) tcttTTTCAGTCTTACTCAATTCTTTAACATTGATATCACGTCTGTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTGAAAGCTTTTTC‑GTTCAATTCTTTGATTTTCTGATTGAGt < 2:41928/141‑1 (MQ=255) ttttCATTCTTACTTAATTCTTTAACCGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCt < 2:479326/141‑1 (MQ=255) ttttCATTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCCACGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCt < 2:1010948/141‑1 (MQ=255) ttttCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGTGTTCt > 2:1007424/1‑141 (MQ=255) ttttCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGTGTTCt > 2:810718/1‑141 (MQ=255) ttttCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATCTTCTGATTGAGTTCt < 1:822429/141‑1 (MQ=255) cAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGct > 2:594560/1‑141 (MQ=255) cAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGct > 1:572729/1‑141 (MQ=255) cTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCttt < 1:243179/141‑1 (MQ=255) ttACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGTCCTACACCCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTAATTGAGTTCTTGCTCtttt > 1:525920/1‑141 (MQ=255) ttACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttt > 1:1053260/1‑141 (MQ=255) ttACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttt > 1:744018/1‑141 (MQ=255) ttCTTTTACAGTCATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTTTTTCATTTTCTGAAATCTGACCATCACTCCAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCg < 1:661499/141‑1 (MQ=255) ttCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCg < 1:1110110/141‑1 (MQ=255) ttAACAGTGATATCACGTCTTTGTTTTTCAAGCTTTTCAATTTCTTTTCTTTCTTTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAg < 1:802510/141‑1 (MQ=255) tAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAGGt > 1:537711/1‑141 (MQ=255) tAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGt > 1:755588/1‑141 (MQ=255) aCAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCa > 2:519579/1‑141 (MQ=255) cAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAt < 1:355398/141‑1 (MQ=255) gcgATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGTTTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttt > 2:817237/3‑141 (MQ=255) gTGATATCACGTCTTTGATCTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTT‑TTTCTATTTTTTGATTTTCTGATTTAGTTCTTGCTCTTTTTTAATACGCAAGTCAttt > 2:618931/1‑141 (MQ=255) tGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttt > 2:902865/1‑141 (MQ=255) tGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttt > 2:34508/1‑141 (MQ=255) gATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttt < 1:131213/141‑1 (MQ=255) atCACGTCTTTGATTTACAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttttttt > 1:566706/1‑140 (MQ=255) cACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTGGCAAGTCATTTTTTTCtt > 2:443782/1‑141 (MQ=255) aCGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCttt > 1:872747/1‑141 (MQ=255) aCGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTATTTCATTTTCTGCCATCTGTACATCACTCAAAGCTTTTTC‑TTTCAATTCCTTGATTTTCTGATTGAGTTCTTGCGCTTTTTTAATTCGCAAGTCATTTTTTTCttt > 2:641147/1‑141 (MQ=255) ttttCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt < 1:442083/141‑1 (MQ=255) ttttCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt < 1:454484/141‑1 (MQ=255) ttttCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt > 1:762977/1‑141 (MQ=255) ttttCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTAAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt < 1:521698/141‑1 (MQ=255) aGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAATATg > 2:300758/1‑141 (MQ=255) aGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATg > 1:838627/1‑141 (MQ=255) aGCTTTTCAATTTCGTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATg > 2:314304/1‑141 (MQ=255) cTTTTCAATTTTTTTTCTTTCGTTTTCTGATATCTGACCTTCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtt < 2:951032/141‑1 (MQ=255) cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCTATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGGGTTAAGATGTTTTGCt > 2:442393/1‑141 (MQ=255) cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCt > 2:804728/1‑141 (MQ=255) cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCt > 2:1083156/1‑141 (MQ=255) aaTTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCtt < 2:416711/141‑1 (MQ=255) tttcttttctTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCACGTCATTTTTTTCTTTAGTTCGCGTTAAAATGTTTTGCtttt > 1:129246/1‑141 (MQ=255) tttcttttctTTCATTTTCTAAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTCAGTTCGAGTTAAAATGTTTTGCtttt > 1:668374/1‑141 (MQ=255) tcttttctttCATTTTCTGAAATCTGACCATCACTCAACGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCt < 2:853169/141‑1 (MQ=255) tcttttctttCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCTATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCt > 1:862574/1‑141 (MQ=255) tttctttcTTTTTCTTGAATCTGGCTATCGCTCGAAGCTTTTTC‑TTTCAATTCTTTGTTTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGt < 2:660434/141‑1 (MQ=255) tttctttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGt < 2:811942/141‑1 (MQ=255) tttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCCATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTGTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCAt < 1:630643/141‑1 (MQ=255) tttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCAt < 2:592772/141‑1 (MQ=255) ttcCTTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTACTTCGAGTTCAAATGTTTTGCTTTTCTTGTTCATc < 2:398931/141‑1 (MQ=255) ttcATTTTCTGATATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGCGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc < 2:798460/141‑1 (MQ=255) ttcATTTTCTGAAATCTTACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc < 2:1372/141‑1 (MQ=255) ttcATTTTCTGAAATCTGATCATCTCTCAAAGCTTTTTC‑TTTTAATTCTTTGTTTTTCTGATTGTGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATTTTTTGCTTTTCTTGTTCATc < 1:1055006/141‑1 (MQ=255) ttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc < 2:1053478/141‑1 (MQ=255) ttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTGTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTGTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc < 1:289443/141‑1 (MQ=255) tCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCACGTCATTTTTTTCTTTTGTTAGAGTTAAAATGTTTTACTTTTCTTTTTCAtttaaggc > 2:759236/1‑134 (MQ=255) tGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTACCTGGAGGTCGAGTTAAAATGTTGTGCTTTTCTTGTTCATCGAATGCACt > 1:1083191/1‑141 (MQ=255) aaaTCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGTGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGGATGCACtat < 1:810718/141‑1 (MQ=255) aaaTCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGTGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat < 1:1007424/141‑1 (MQ=255) aTCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTATGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGACTGCACtatcc > 1:36705/1‑139 (MQ=255) gACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAt > 1:976035/1‑141 (MQ=255) aCCATCCCTCAACGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATc < 1:349853/141‑1 (MQ=255) ccATCTCTTCAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCa < 2:92188/141‑1 (MQ=255) ccATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCa > 1:989405/1‑141 (MQ=255) aCTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAg > 1:630409/1‑141 (MQ=255) cAAAGCTTTTTT‑TTTTTTTTTTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTCAAATGTTTTGCTTTTCTTGTTCTTCGAATGCTTTTTTCTTATCAATAAGttt > 2:157307/1‑140 (MQ=255) cAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATCCTTATCAATAAGttt > 2:250642/1‑140 (MQ=255) gCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCCATAAGTTCTTgg > 2:219881/1‑140 (MQ=255) gCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATCATTTCTTGa > 2:261663/1‑141 (MQ=255) cTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAg < 2:360220/141‑1 (MQ=255) tc‑tttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGttttt < 1:866275/141‑1 (MQ=255) tcAATTCTTTTGTTTTCTGATTTAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAATATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGa < 2:626344/141‑1 (MQ=255) ccaTTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAg < 1:409664/139‑1 (MQ=255) cAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCggg > 1:150667/1‑139 (MQ=255) cAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAg > 1:664755/1‑141 (MQ=255) cTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCt < 1:594560/141‑1 (MQ=255) tttGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCtt < 2:264880/141‑1 (MQ=255) tttGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCtt < 1:45156/141‑1 (MQ=255) tcaTTTTCTGGTTGAGTTTTTGGTTTTTTTTAATTCGCAGGTCATTTTCTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCCTCGAATGCACTATACTTTTCAATAAGTTCTTGAGTTTTTTCGAGTTCCtttt < 1:1029461/139‑1 (MQ=255) tGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCtttt < 2:761687/141‑1 (MQ=255) ttttttGATTGAGTTCTTGCTCTCTTTTCATTCGCAAGTCCTTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAt < 1:256405/141‑1 (MQ=255) ttttCTGATTGAGTTTTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAt < 2:689712/141‑1 (MQ=255) ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAt < 2:736792/141‑1 (MQ=255) ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAt < 2:328577/141‑1 (MQ=255) tttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAtt < 1:953910/141‑1 (MQ=255) tttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTAtt < 2:14391/141‑1 (MQ=255) tCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTc < 1:134435/141‑1 (MQ=255) cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCt > 1:488454/1‑141 (MQ=255) ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCttttt < 1:1083156/141‑1 (MQ=255) tGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCtttttt > 1:619122/1‑141 (MQ=255) gAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTc < 1:1013881/141‑1 (MQ=255) gAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTc < 2:340105/141‑1 (MQ=255) aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTCt < 1:902865/141‑1 (MQ=255) aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTCt < 1:34508/141‑1 (MQ=255) | GCTCTTTTTCAGTCTTACTCAATTCTTTAACAGTGATATCACGTCTTTGATTTTCAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTC‑TTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGAGTTCCTTTTTATTTCTTTTTTCT > CP000730/1574351‑1574631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |