New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 37094 =98 (1.250)9 (0.120) 4/240 NT 10.1% coding (21/231 nt) USA300HOU_0028 hypothetical protein
?CP000730 37188 = 69 (0.960)coding (115/231 nt) USA300HOU_0028 hypothetical protein

Only 100 of 122 total aligned reads displayed.

GAACATATAAGATAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAAT  >  CP000730/36954‑37234
                                                                                                                                            |                                                                                                                                            
taacgtacctcttatctgtcattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattactcttattagtatactctcagttagaatgagtataaaaatgtaaataataacc                                                                                                                                              <  2:414219‑M1/1‑1 (MQ=255)
taacgtacctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacc                                                                                                                                              <  2:43876‑M1/1‑1 (MQ=255)
taacgtacctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcaataagaatgcgtataaaaatgaaaattacgacc                                                                                                                                              <  2:634032‑M1/1‑1 (MQ=255)
 aacgtacctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCg                                                                                                                                             <  2:386018‑M1/2‑1 (MQ=255)
 aaCATATAAGATAGAGAAATAACCTAGTGGCCGATTGTGCTGGATGAGCCTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACg                                                                                                                                             <  1:323207/141‑1 (MQ=255)
  aCATATAAGATAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATCTGCTTATTTTTTTATCTTACgt                                                                                                                                            >  2:869784/1‑140 (MQ=255)
   aatatAAGATAGAGAAATAAACTAGCGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAGGTTTACAGTGATATGCTTATTTTTTTATCTTACGAt                                                                                                                                           <  2:338600/140‑1 (MQ=255)
    ctacctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGAtt                                                                                                                                          >  1:625561‑M1/137‑141 (MQ=255)
        ctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGt                                                                                                                                      >  1:677035‑M1/133‑141 (MQ=255)
        ctcttatctgtaattttactgagaactgcttttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGt                                                                                                                                      <  1:771299‑M1/9‑1 (MQ=255)
        ctcttatctgtaattttactgagaactgcttttaacaaacctcttacctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGt                                                                                                                                      >  1:829039‑M1/133‑141 (MQ=255)
        aaGATAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGt                                                                                                                                      >  2:621101/1‑141 (MQ=255)
          gATAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTAc                                                                                                                                    >  2:24325/1‑141 (MQ=255)
              gagaAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCTCTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGc                                                                                                                                <  1:145928/141‑1 (MQ=255)
                  aaTAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGc                                                                                                                            >  2:191315/1‑141 (MQ=255)
                   aTAAATTAGTGGCCGATTGTGCTTAATGAGCGTGGGACATTAATCCTAACTCGAAATAAATAAGCACATCACTAAACTGATTTTATAAAGTTAACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt                                                                                                                           >  1:694486/1‑141 (MQ=255)
                   aTAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt                                                                                                                           >  2:808480/1‑141 (MQ=255)
                   aTAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt                                                                                                                           <  1:85995/141‑1 (MQ=255)
                   aTAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt                                                                                                                           >  2:176637/1‑141 (MQ=255)
                   aTAAACTAGTGGCCGATTGGGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCt                                                                                                                           <  1:163040/141‑1 (MQ=255)
                    tAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTTCGATTTTGTACGTGCATGCtt                                                                                                                          >  2:769491/1‑141 (MQ=255)
                      aaCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGc                                                                                                                        <  1:110333/141‑1 (MQ=255)
                        cTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTCTGTTACGATCTGGTACGTGCATGCTTGCCt                                                                                                                      >  1:634032/1‑141 (MQ=255)
                        cTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCt                                                                                                                      >  2:53036/1‑141 (MQ=255)
                        cTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATACTCACTCTAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTTCATGCTTGCCt                                                                                                                      >  1:414219/1‑141 (MQ=255)
                         tAGTGGCCGATTGTGCTTGATGAGCTTGGTACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTa                                                                                                                     <  2:895676/141‑1 (MQ=255)
                            tGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAggg                                                                                                                  <  2:742563/141‑1 (MQ=255)
                             ggCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAgggg                                                                                                                 <  1:24325/141‑1 (MQ=255)
                              gCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGt                                                                                                                >  2:449299/1‑141 (MQ=255)
                              gCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGACTGCGACCAGACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGt                                                                                                                <  1:685233/141‑1 (MQ=255)
                                     gtgCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTc                                                                                                         >  2:882546/1‑141 (MQ=255)
                                     gtgCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTc                                                                                                         >  1:748474/1‑141 (MQ=255)
                                     gtgCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTc                                                                                                         >  1:229932/1‑141 (MQ=255)
                                      tttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCg                                                                                                        <  1:52214‑M1/39‑1 (MQ=255)
                                      tttaacaaacctcttatctgcaattttacttagaattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCg                                                                                                        <  1:52176‑M1/39‑1 (MQ=255)
                                        cTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACCGTGTAATGCTGATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAg                                                                                                      >  1:686169/1‑141 (MQ=255)
                                        cTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAg                                                                                                      >  1:328767/1‑141 (MQ=255)
                                           gatgaGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCa                                                                                                   <  1:154895/141‑1 (MQ=255)
                                               aGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAg                                                                                               <  2:335692/141‑1 (MQ=255)
                                               aGCGTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAg                                                                                               <  1:231611/141‑1 (MQ=255)
                                               aGCCTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAg                                                                                               <  1:369870/141‑1 (MQ=255)
                                                 cTTGGCACATAAACCCTAGCTCGAAATAAATATGCATATCACTAAACTGTTTTTTTAAAGTTAACAGTGATATTCTTATTTTTTTATCTTACGATTGGGAACGTGCATGCCTGCCGAGGGGTATGGCTCGAGCCATTAGtc                                                                                             <  2:3736/141‑1 (MQ=255)
                                                  ttGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtct                                                                                            >  1:718442/1‑141 (MQ=255)
                                                   tGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTGTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGtctc                                                                                           <  2:766952/141‑1 (MQ=255)
                                                          tAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGcaca                                                                                    >  1:439670/1‑141 (MQ=255)
                                                            aaTCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTGTTAAAGTTTACAGTGATATGCTTATTTTCTTATCTTACGATTTGGTACGTGCATGCTTCCCCAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATa                                                                                  <  2:783813/141‑1 (MQ=255)
                                                              tCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACt                                                                                >  2:746649/1‑141 (MQ=255)
                                                               ccTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTa                                                                               >  2:672612/1‑141 (MQ=255)
                                                               ccTAACACGAAATAAAGAAGCATATCACTAAACTTATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTa                                                                               <  2:583526/141‑1 (MQ=255)
                                                                cTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTAt                                                                              <  2:596588/141‑1 (MQ=255)
                                                                    cTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTccc                                                                          <  2:209002/141‑1 (MQ=255)
                                                                     tCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCt                                                                         >  1:78681/1‑141 (MQ=255)
                                                                       gAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCa                                                                       >  2:804110/1‑141 (MQ=255)
                                                                       gAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTATTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATGAGTCTCTCGCACATACTATTCCCTCa                                                                       >  1:575593/1‑141 (MQ=255)
                                                                       aattgcttttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCa                                                                       >  2:243935‑M1/70‑141 (MQ=255)
                                                                       aattgcttttacgattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCa                                                                       >  2:263727‑M1/70‑141 (MQ=255)
                                                                          ataaataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATGTGCTTCTTTTTTTATCTTACGATTTTGTACGTGCATGCTTGTCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGc                                                                    >  2:861104/1‑141 (MQ=255)
                                                                          ataaataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGc                                                                    <  1:813595/141‑1 (MQ=255)
                                                                          ataaataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGc                                                                    >  2:755770/1‑141 (MQ=255)
                                                                           taaataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCg                                                                   <  2:167648/141‑1 (MQ=255)
                                                                             agtaaGCATATCTCTAAACTGATTTTTTAAAGTTTACGGTGATTTGCTTATTTTTTTATCTTACGAGTTTGTACGTGCATTCCTGCCCAGGTGTAGGGCTCGACCCATTAGTCTCTCGCACATACTATTCCCTGAGGCGtt                                                                 <  2:358892/139‑2 (MQ=255)
                                                                             aataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTTTTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTc                                                                 >  1:366047/1‑141 (MQ=255)
                                                                             aataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTc                                                                 >  2:105855/1‑141 (MQ=255)
                                                                              ataaGCATATCACTAAACTGATTTTTTTTTTTTTTTTGTGATATGCTTATTTTTTTATCTTACGATTTTTTACGTGCATGCTTGCCTAGGGGTATGCCCCGATCCATTAGTTTCTCGCACATACTCTTCCCTCTGGccttt                                                                >  2:122468/1‑137 (MQ=255)
                                                                              ataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCa                                                                >  1:173090/1‑141 (MQ=255)
                                                                               ttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAg                                                               >  2:52214‑M1/62‑141 (MQ=255)
                                                                               ttactattcctcttattagtataatctcagtaagaatgcgtataaaaatgaaaattacaacCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAg                                                               >  1:433032‑M1/62‑141 (MQ=255)
                                                                                 aGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCa                                                             >  1:388239/1‑141 (MQ=255)
                                                                                  gCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCAc                                                            <  1:621101/141‑1 (MQ=255)
                                                                                     tatCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTa                                                         >  1:334433/1‑141 (MQ=255)
                                                                                      ttCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTAc                                                        <  1:187968/140‑1 (MQ=255)
                                                                                      ttCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTAc                                                        <  2:336960/140‑1 (MQ=255)
                                                                                      atCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTAc                                                        <  2:492360/141‑1 (MQ=255)
                                                                                       tCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACa                                                       <  1:191315/141‑1 (MQ=255)
                                                                                                tGATTTTTTAAAGTTTACAGTGATATGCTTATGTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGtt                                              <  1:527877/141‑1 (MQ=255)
                                                                                                    tttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGtga                                          >  2:748414/1‑139 (MQ=255)
                                                                                                       ttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAAttt                                       <  2:454846/141‑1 (MQ=255)
                                                                                                       tcaaaGTTTACTGTGATAGTCTTATTTTTTTATGCTACGTGTTTGTACGTGCACGCTTGCCTAGGGGTATGGCTCCAGCCCTGAGCCACTCGCACATATTATTCCCTCAGGCGTCAGCACTTACGAAATCGGTTGTAAttt                                       <  2:388975/139‑1 (MQ=255)
                                                                                                        tAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAAtttt                                      <  1:672612/141‑1 (MQ=255)
                                                                                                          aaGTTTACGGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCa                                    <  2:424783/141‑1 (MQ=255)
                                                                                                          aaGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTACAGACATGACCCGAGCCATTAGGCTCTCGCACATACTATTCCCTCCACCGTCAGCACTTACAAAATCGGTTGTAATTTTCa                                    >  2:453077/1‑141 (MQ=255)
                                                                                                           aGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTTGTGCGAACAAGACTCCATGCCCTCAGGCGTCAGCACTTACAAACTCGGGTGTAATTGTCAt                                   >  1:178635/1‑141 (MQ=255)
                                                                                                                aCAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTta                              <  2:685473/141‑1 (MQ=255)
                                                                                                                 cAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTtat                             <  1:838774/141‑1 (MQ=255)
                                                                                                                    ggATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACg                          <  1:152343/140‑1 (MQ=255)
                                                                                                                     tatacGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGc                         <  1:769491/140‑1 (MQ=255)
                                                                                                                     gATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGc                         <  2:163576/141‑1 (MQ=255)
                                                                                                                       tatGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCAt                       <  1:746649/141‑1 (MQ=255)
                                                                                                                         tGCTTATTTTTTTATCTTACGATTTTATACGTGCATGCTGGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTc                     <  2:405025/141‑1 (MQ=255)
                                                                                                                          gCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCt                    <  1:882546/141‑1 (MQ=255)
                                                                                                                              aTTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACt                <  1:618152/141‑1 (MQ=255)
                                                                                                                               tttttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTg               <  2:388239/141‑1 (MQ=255)
                                                                                                                                 tttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTgag             <  1:808480/141‑1 (MQ=255)
                                                                                                                                 tttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTgag             <  1:176637/141‑1 (MQ=255)
                                                                                                                                   tttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGAt           >  1:873349/1‑141 (MQ=255)
                                                                                                                                   tttATCTCACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGAt           <  2:666181/141‑1 (MQ=255)
                                                                                                                                       tCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATtata       <  1:278916/141‑1 (MQ=255)
                                                                                                                                       tCTTACGATTTTGTACGGGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATtata       <  2:368561/141‑1 (MQ=255)
                                                                                                                                           aCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCCTTCTTACTGAGATTATACtaa   <  1:486930/141‑1 (MQ=255)
                                                                                                                                            CGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACtaat  >  2:386697‑M1/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GAACATATAAGATAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAAT  >  CP000730/36954‑37234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.