New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	54 (0.690)	13 (0.190)	12/232	NT	18.6%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	66 (0.950)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACT  >  CP000730/2085156‑2085432                                                                                                                                             |                                                                                                                                         ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctat                                                                                                                                          <  1:761372‑M1/1‑1 (MQ=255) aaaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGtttt                                                                                                                                          <  1:325813/141‑1 (MQ=255)      aaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATc                                                                                                                                     <  1:552762/141‑1 (MQ=255)       aGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATcc                                                                                                                                    <  1:300643/141‑1 (MQ=255)        gTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCACAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTTTATCCa                                                                                                                                   >  2:267447/1‑141 (MQ=255)         gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                  <  1:663541‑M1/9‑1 (MQ=255)          tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                 <  2:229093‑M1/10‑1 (MQ=255)          tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                 <  2:721239‑M1/10‑1 (MQ=255)          tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                 <  1:429869‑M1/10‑1 (MQ=255)            tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                               <  1:97128‑M1/12‑1 (MQ=255)            gaaCACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACt                                                                                                                               <  2:633583/140‑1 (MQ=255)             aaCACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTg                                                                                                                              <  1:779231/141‑1 (MQ=255)             aaCACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTg                                                                                                                              >  1:804053/1‑141 (MQ=255)             aaCACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACAGTTTTGTATCCAAACTg                                                                                                                              >  2:188899/1‑141 (MQ=255)               cacTTGCATTAGCAAATTTATTATTAGTTGGTGAACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGga                                                                                                                            <  1:372781/141‑1 (MQ=255)                  ttGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGAc                                                                                                                         <  1:407986/141‑1 (MQ=255)                         aGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAc                                                                                                                  <  1:304062/141‑1 (MQ=255)                          agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                 >  1:20827‑M1/116‑141 (MQ=255)                          agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                 >  1:20902‑M1/116‑141 (MQ=255)                           cAAATTTATTATTAGTTGGTGCACTTACTGACCATTGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                <  2:300394/141‑1 (MQ=255)                                   ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAATGATGATACTGATTTGAAGGTAGTTAGTCATAACGTTTATATGTTGTCGACCGTTTTGTATCAAAACTGGAGACGTTTTACATAAAAtaaa                                                                                                        >  2:804921/1‑138 (MQ=255)                                      taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaagttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAattaatta                                                                                                     <  2:532806‑M1/38‑1 (MQ=255)                                       aatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatgtagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                    <  2:155671‑M1/39‑1 (MQ=255)                                        atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                   >  2:581303‑M1/102‑141 (MQ=255)                                        atgaagaggacaaaaaaaaaaataaaatatttgaaagtatgtaatttagggaccccttagggcctccaaacccaataaatactgttgttacaaggtttctaTGTATCAAAACTGGAGACTTTTAACATAAAAgtactcagc                                                                                                   <  1:225832‑M1/40‑5 (MQ=255)                                        aGTTGTTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGTAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                   <  2:281008/141‑1 (MQ=255)                                        aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATTTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                   <  1:631310/141‑1 (MQ=255)                                             gTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACAGTTTTGTATCCAAACTGGAGCCTTTTAACATAAAATTACCGATCATTCa                                                                                              >  2:776267/1‑141 (MQ=255)                                                 aCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                          <  1:19933/141‑1 (MQ=255)                                                  caaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                         <  2:301040‑M1/50‑1 (MQ=255)                                                  cTTACTGACAATATTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                         <  2:444600/141‑1 (MQ=255)                                                  cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                         <  2:786172/141‑1 (MQ=255)                                                   ttACTAAAAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                        <  2:348475/141‑1 (MQ=255)                                                             tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTACTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                              <  2:642618/141‑1 (MQ=255)                                                                     ttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCaa                                                                      >  1:372142‑M1/73‑141 (MQ=255)                                                                      aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg                                                                     <  2:621274/141‑1 (MQ=255)                                                                        ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATCTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAATGt                                                                   >  1:633554/1‑141 (MQ=255)                                                                        ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                   >  1:943733/1‑141 (MQ=255)                                                                         cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                  >  2:407064/1‑141 (MQ=255)                                                                          gAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt                                                                 <  1:188899/141‑1 (MQ=255)                                                                           aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtttt                                                                >  1:636366/1‑140 (MQ=255)                                                                            aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                               <  2:153781/141‑1 (MQ=255)                                                                            aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                               <  2:134351/141‑1 (MQ=255)                                                                             tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAACAGTCAAACAGAAGAAGATCAAAGTTtata                                                              >  2:534574/1‑141 (MQ=255)                                                                               tAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAAc                                                            >  1:767746/1‑141 (MQ=255)                                                                                 agaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                          <  2:750503/141‑1 (MQ=255)                                                                                  gaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACttt                                                         <  2:813303/141‑1 (MQ=255)                                                                                     agaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                      <  1:548761/141‑1 (MQ=255)                                                                                       atgatACTGATTTGAAGTTAGTTAGTCATAACGTTCATCTGTTATCGAAAATTTTGTATCCACCATAGAAATATCCAAGATAAAATGAATTATTATTCAAATTATAAAACACCAAAATAGCAAGGGTTATAACTttatcat                                                    >  2:785417/1‑141 (MQ=255)                                                                                           tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                >  2:127486/1‑141 (MQ=255)                                                                                           tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAACATAATAGCAAGGTTTATAACTttgtaattgtg                                                >  1:136530/1‑138 (MQ=255)                                                                                                ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAATTAAAACAGCATAATATCAAGGTTTGTAACTTTATCATTATCaataa                                           <  1:766219‑M1/96‑1 (MQ=255)                                                                                                 tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                          <  1:8202‑M1/97‑1 (MQ=255)                                                                                                  ttGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAataata                                         >  1:420925/1‑141 (MQ=255)                                                                                                   tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                        >  2:68498/1‑141 (MQ=255)                                                                                                   tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                        <  2:727902/141‑1 (MQ=255)                                                                                                   tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                        <  2:579024/141‑1 (MQ=255)                                                                                                         tagttcgtTTTAACGTTTATATGTTATTCGCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAATAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                  <  2:492630/141‑1 (MQ=255)                                                                                                            ttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATCCCCCATataa                               >  2:58290/1‑141 (MQ=255)                                                                                                            ttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa                               >  1:418570/1‑141 (MQ=255)                                                                                                             acccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                              <  1:68754‑M1/109‑1 (MQ=255)                                                                                                               gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGCAAGACATCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                            >  1:217473/1‑141 (MQ=255)                                                                                                                 cATAACGTTTATATGTTATCGTCCGTTTTGTATCCAACCTGGAGACTTTTAACATCAAATTATTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTTTCATTATCAATAATACCTCATataaaataa                          >  2:499156/1‑141 (MQ=255)                                                                                                                    aaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                       >  2:732063‑M1/26‑141 (MQ=255)                                                                                                                     aCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt                      >  2:134400/1‑141 (MQ=255)                                                                                                                        actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCCAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta                   >  2:53550‑M1/22‑141 (MQ=255)                                                                                                                         ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                  >  2:333062/1‑141 (MQ=255)                                                                                                                              tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact             >  1:504225/1‑141 (MQ=255)                                                                                                                                  aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt         <  1:458612/141‑1 (MQ=255)                                                                                                                                  aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt         <  1:585398/141‑1 (MQ=255)                                                                                                                                    cGACCGTATTGTATCCAAAATGGAAACTTGTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttag       <  2:466327/141‑1 (MQ=255)                                                                                                                                      aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATTATACCTCATATAAAATAAAAttttagggactttttaggg     <  2:708607/141‑1 (MQ=255)                                                                                                                                      aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATATAAttttagggactttttaggg     <  2:647712/141‑1 (MQ=255)                                                                                                                                       ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga    >  2:719600/1‑141 (MQ=255)                                                                                                                                        cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAACGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggat   >  2:702398/1‑140 (MQ=255)                                                                                                                                         gTTTTGTATCCAAACTGGAGACTTTTAGCATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGCTTATAACTTTCTCATTATAACTAATACCGCACATAAAATAAAAttttagggacgttttagggcct  >  1:303002/1‑141 (MQ=255)                                                                                                                                         gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggcctttttagggact  >  2:309775/1‑141 (MQ=255)                                                                                                                                         gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggact  <  2:357727/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACT  >  CP000730/2085156‑2085432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.