Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 383,775 C→T 3.1% T44T (ACG→ACA USA300HOU_0350 ← PTS family porter component IIC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730383,7750CT 3.1% 407.9 / 2.8 128T44T (ACG→ACAUSA300HOU_0350PTS family porter component IIC
Reads supporting (aligned to +/- strand):  ref base C (60/63);  new base T (2/2);  total (63/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.49e-01

Only 100 of 128 total aligned reads displayed.

TTAAGGCTAGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGTCGTA  >  CP000730/383636‑383914
                                                                                                                                           |                                                                                                                                           
ttAAGGCTAGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCg                                                                                                                                            >  1:1198640/1‑141 (MQ=255)
    ggCTAGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATTGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGtttt                                                                                                                                        <  2:939981/141‑1 (MQ=255)
    ggCCAGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACAACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGtttt                                                                                                                                        <  2:638194/141‑1 (MQ=255)
        agggagctgATGGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCAGAATGGTTCAAGAGATCGAACGTCGACATCAGCTCCTGCACTTATAATTAAGAAGCCTTATATCCTTTTAATg                                                                                                                                    <  2:698588/133‑1 (MQ=255)
        aGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATg                                                                                                                                    <  2:215100/141‑1 (MQ=255)
        aGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATg                                                                                                                                    >  1:1094613/1‑141 (MQ=255)
        aGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATg                                                                                                                                    >  1:550235/1‑141 (MQ=255)
         gTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATgg                                                                                                                                   <  1:70659/141‑1 (MQ=255)
         gTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATgg                                                                                                                                   <  1:1028724/141‑1 (MQ=255)
            agaCGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTc                                                                                                                                <  2:269643/141‑1 (MQ=255)
              aCGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCt                                                                                                                              >  2:1120241/1‑141 (MQ=255)
              aCGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCt                                                                                                                              >  2:857741/1‑141 (MQ=255)
                cattgCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGTAGCCTAATATCGTCTTAATGGTTCCTGa                                                                                                                            <  1:781593/137‑1 (MQ=255)
                 aTAGCTTCGTTGTTACATACGATACTTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGaa                                                                                                                           >  1:596564/1‑141 (MQ=255)
                    gCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATTGTTTTAATGGTTCCTGAAGTg                                                                                                                        >  1:752717/1‑141 (MQ=255)
                      ttCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCCCCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTACTGGTTCCTGACGTGAt                                                                                                                      >  1:986801/1‑141 (MQ=255)
                         tttgttAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGt                                                                                                                   <  2:1174421/140‑1 (MQ=255)
                             ttAGGTACGATACCTTGCACACCAAATGCGTGTTTGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCg                                                                                                               <  1:1115853/141‑1 (MQ=255)
                             ttAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCg                                                                                                               <  1:992032/141‑1 (MQ=255)
                               aagTACGATCCCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGCATGGTTAAATAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGc                                                                                                             <  2:542412/139‑1 (MQ=255)
                               aGGTACGATACCTTGCACACCAACTGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGc                                                                                                             >  2:560800/1‑141 (MQ=255)
                                    cGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGtt                                                                                                        <  2:885259/141‑1 (MQ=255)
                                    cGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGtt                                                                                                        <  2:1153615/141‑1 (MQ=255)
                                    cGATACCTTGCACACCAAATGCGGGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGtt                                                                                                        <  2:150525/141‑1 (MQ=255)
                                     gATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGttt                                                                                                       >  2:344179/1‑141 (MQ=255)
                                      aTACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGTGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGtttt                                                                                                      <  1:271121/141‑1 (MQ=255)
                                      aTACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAGAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGtttt                                                                                                      <  1:744640/141‑1 (MQ=255)
                                         ccTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTc                                                                                                   >  1:663211/1‑141 (MQ=255)
                                         ccTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCAACTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGACGGTCGCGGCACGTTTTTTc                                                                                                   >  1:776859/1‑141 (MQ=255)
                                         ccTTGCACACCAAATGCGTGTTGGAATATTTTGCAGAGTGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAGATTAGGAAGCCTAATATCGTTGTAATGGTTCCTGTAGTGATCGTTGCGGCAGGttttttt                                                                                                   >  1:76732/1‑140 (MQ=255)
                                           ttGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTg                                                                                                 <  1:196939/141‑1 (MQ=255)
                                             gCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTTTgtt                                                                                               >  2:701458/1‑139 (MQ=255)
                                             gCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGaa                                                                                               >  1:681460/1‑141 (MQ=255)
                                             gCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGaa                                                                                               >  1:470324/1‑141 (MQ=255)
                                                cacCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGa                                                                                            <  1:227502/141‑1 (MQ=255)
                                                cacCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGa                                                                                            <  1:301080/141‑1 (MQ=255)
                                                cacCAAATGCGTGTGGGAATATTTCGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGa                                                                                            <  2:160699/141‑1 (MQ=255)
                                                 acCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGAt                                                                                           >  2:1136338/1‑141 (MQ=255)
                                                   cAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATAGAACGACGAAATCAGAACCAGAACTTAAAATTAAGAAGGCGAGTATCGTTTTAATGGGTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAATGATTa                                                                                         >  2:694974/1‑141 (MQ=255)
                                                    aaaTGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTaa                                                                                        <  2:484435/141‑1 (MQ=255)
                                                    aaaTGCGTGTTGGAATATTTTGCCGAATGCATCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTaa                                                                                        >  1:904816/1‑141 (MQ=255)
                                                    aaaTGCGGGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTaa                                                                                        <  2:825191/141‑1 (MQ=255)
                                                          gtgtTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACTtat                                                                                  >  2:777112/1‑141 (MQ=255)
                                                          gtgtTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCtat                                                                                  >  1:122411/1‑141 (MQ=255)
                                                           agtTGGAATATTTGACTTAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCtata                                                                                 >  2:554022/2‑141 (MQ=255)
                                                                  atatTTTGCCGAATTGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAACCATAATATCGATTTAATGGTGCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCaa                                                                          <  2:130247/141‑1 (MQ=255)
                                                                      gtgtccGAATGGTTCTAGAGCTAGAACGACGGCATCAGCCCCTGCACTTAAAATTAAGAAGCCTAGTATCGTTTGAATGGATCGTGAAGTGATCGTGCGGGCAGGTTTTTTCTGAACGCTTAAACCTATAAAGGCAAACAg                                                                      >  2:498286/5‑141 (MQ=255)
                                                                         gCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACTTGCACTTAAAATTAAGCAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTGTGGACTATTTAACCTAGAAAGGCAATACGTGc                                                                   >  2:705637/1‑141 (MQ=255)
                                                                         gCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGc                                                                   >  2:512739/1‑141 (MQ=255)
                                                                          ccGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGca                                                                  >  1:1153642/1‑141 (MQ=255)
                                                                           cGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGcaa                                                                 <  1:1007982/141‑1 (MQ=255)
                                                                           cGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGcaa                                                                 <  1:560800/141‑1 (MQ=255)
                                                                             aaTGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGcaaca                                                               <  1:310340/141‑1 (MQ=255)
                                                                              aTGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGcaacaa                                                              <  1:832837/141‑1 (MQ=255)
                                                                               tGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAg                                                             <  1:374214/141‑1 (MQ=255)
                                                                               tGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAg                                                             >  1:796221/1‑141 (MQ=255)
                                                                                cgTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCAAAATATAGTTTTAATGGTTCCTGAAGTGATCGTTGCGGAAGGCTTTTTCTGAACGATTAAACCTATAAAGGCAATCAATGaaacaaca                                                            >  2:440999/2‑139 (MQ=255)
                                                                                   tCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGCATg                                                         >  2:1094402/1‑141 (MQ=255)
                                                                                           tCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCttgttg                                                 >  1:521239/1‑141 (MQ=255)
                                                                                           tCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTg                                                 >  1:260729/1‑141 (MQ=255)
                                                                                           tCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTg                                                 >  1:463688/1‑141 (MQ=255)
                                                                                           tCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTg                                                 >  1:575030/1‑141 (MQ=255)
                                                                                           tCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTg                                                 <  2:9095/141‑1 (MQ=255)
                                                                                            cGAACGACGACATCAGCAGCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTACACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGa                                                >  2:69108/1‑141 (MQ=255)
                                                                                             gAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGAc                                               <  1:258093/141‑1 (MQ=255)
                                                                                              aaCGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACt                                              <  1:1045651/141‑1 (MQ=255)
                                                                                                cgacgaCATCAGCACCTGCACTTAAAATTAATAAGCCTAACATCCTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTa                                            <  1:3262/141‑1 (MQ=255)
                                                                                                cgacgaCATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATTGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTa                                            <  2:752717/141‑1 (MQ=255)
                                                                                                cgacgaCATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTa                                            <  1:783965/141‑1 (MQ=255)
                                                                                                cgacgaCATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTa                                            <  2:884846/141‑1 (MQ=255)
                                                                                                   cgacATCAGCACCTGGACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTaaaa                                         <  2:461519/141‑1 (MQ=255)
                                                                                                   cgacATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTaaaa                                         <  2:1092959/141‑1 (MQ=255)
                                                                                                   cgacATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTaaaa                                         <  2:352570/141‑1 (MQ=255)
                                                                                                     acATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAata                                       >  1:8810/1‑141 (MQ=255)
                                                                                                      cATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTTTTTATGTTTTAACCTATAAAGACGATCAAGGCAACAAGACTGGCTGGTTGACTTCAAatag                                      >  2:47730/1‑140 (MQ=255)
                                                                                                      cATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGCACGGCTGGTAGACTTAAAataa                                      >  1:745803/1‑140 (MQ=255)
                                                                                                       aTCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATc                                     <  1:478395/141‑1 (MQ=255)
                                                                                                        tCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGGTGGTTGACTTAAAatatgg                                    >  2:977534/1‑139 (MQ=255)
                                                                                                        tCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGCTGACTTAAAAAATcc                                    >  2:987673/1‑140 (MQ=255)
                                                                                                        tCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAAAATGGCTGGTTGACTTAAAataacc                                    >  2:700843/1‑138 (MQ=255)
                                                                                                             aCCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACtat                               <  1:705294/141‑1 (MQ=255)
                                                                                                                tGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATaaa                            >  2:142843/1‑141 (MQ=255)
                                                                                                                  cACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAAt                          >  2:863079/1‑141 (MQ=255)
                                                                                                                   aCTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAAtt                         <  1:901401/141‑1 (MQ=255)
                                                                                                                      tAAAGTTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAg                      <  2:8397/141‑1 (MQ=255)
                                                                                                                        gaagtAAGAAGCGCAATGTCGTGTTTATGTTGCCTGAAGTGAACGTTTCGGCAGGAATGTACTGAACGATGAAACCTATAAAGGCAATCAATGCAACAAGAAAGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGa                    <  2:887890/137‑1 (MQ=255)
                                                                                                                        aaaTTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGa                    >  2:867802/1‑141 (MQ=255)
                                                                                                                         aaTTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGAt                   <  2:463688/141‑1 (MQ=255)
                                                                                                                           ttAATAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGAttg                 <  1:739063/141‑1 (MQ=255)
                                                                                                                             aatttgCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTGAAATATCGACTATAAAATTAAGGAttgct               <  2:1198640/136‑1 (MQ=255)
                                                                                                                                aagCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGAttgcttgc            >  1:104628/1‑141 (MQ=255)
                                                                                                                                  gCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATACGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTAAAAAATTAAGGATTGCTTACAt          >  2:594076/1‑141 (MQ=255)
                                                                                                                                   ccTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATa         >  2:1067509/1‑141 (MQ=255)
                                                                                                                                     tAATATCGTTTTAATGGTTCCTGAAGTGCTCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAgg       <  2:618501/141‑1 (MQ=255)
                                                                                                                                     tAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAgg       <  1:1136338/141‑1 (MQ=255)
                                                                                                                                       atatCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGtt     >  1:585039/1‑140 (MQ=255)
                                                                                                                                       atatCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGTc     <  1:554022/141‑1 (MQ=255)
                                                                                                                                       atatCGTTTTAATGGTTCCTGAAGTGATCGTTCCGGCAGGTGTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTACATAgatg     >  2:538011/1‑138 (MQ=255)
                                                                                                                                         atCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGTCGt   <  2:679293/141‑1 (MQ=255)
                                                                                                                                         atCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGTAGt   >  1:910377/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTAAGGCTAGTGAGACGATAGCTTCGTTGTTAGGTACGATACCTTGCACACCAAATGCGTGTTGGAATATTTTGCCGAATGGTTCAAGAGATCGAACGACGACATCAGCACCTGCACTTAAAATTAAGAAGCCTAATATCGTTTTAATGGTTCCTGAAGTGATCGTTGCGGCAGGTTTTTTCTGAACGATTAAACCTATAAAGGCAATCAGTGCAACAAGAATGGCTGGTTGACTTAAAATATCGACTATAAAATTAAGGATTGCTTGCATAGGTCGTA  >  CP000730/383636‑383914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: