Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 478,502 C→A 70.7% D342E (GAC→GAA USA300HOU_0457 → NADH dehydrogenase (ubiquinone)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730478,5020CA70.7% 172.5 / 109.9 143D342E (GAC→GAAUSA300HOU_0457NADH dehydrogenase (ubiquinone)
Reads supporting (aligned to +/- strand):  ref base C (17/25);  new base A (46/54);  total (64/79)
Fisher's exact test for biased strand distribution p-value = 5.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01

Only 100 of 144 total aligned reads displayed.

AGTTCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATCAAA  >  CP000730/478364‑478641
                                                                                                                                           |                                                                                                                                           
aGTTCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGAATCTGCTAAAGACGc                                                                                                                                           >  2:336693/1‑141 (MQ=255)
   tCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTa                                                                                                                                        <  2:918531/141‑1 (MQ=255)
   tCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTa                                                                                                                                        <  2:321744/141‑1 (MQ=255)
   tCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTa                                                                                                                                        <  1:49610/141‑1 (MQ=255)
     aaTGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATg                                                                                                                                      >  2:58405/1‑141 (MQ=255)
       tgtgCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGc                                                                                                                                    >  2:622771/1‑141 (MQ=255)
        ttgCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCt                                                                                                                                   <  2:765889/140‑1 (MQ=255)
        ttgCATTGGGTGTATATTCAGCAGAGAATATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCt                                                                                                                                   <  2:263891/140‑1 (MQ=255)
        gtgCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCt                                                                                                                                   <  1:933558/141‑1 (MQ=255)
          gCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTgg                                                                                                                                 <  1:354579/141‑1 (MQ=255)
           cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGCTTCAATATTCCAAAACAAGCATCTGCGAAAGAAGCTTATGGCTGGa                                                                                                                                >  1:103053/1‑141 (MQ=255)
           cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGa                                                                                                                                <  1:451683/141‑1 (MQ=255)
           cATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGAAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGa                                                                                                                                >  1:8067/1‑141 (MQ=255)
             ttGGGTGTATTTTCAGCAGCGATTATTCATTTATTATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGAtt                                                                                                                              <  2:152035/141‑1 (MQ=255)
              tGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCCAAACAAGCATCTGTTAAAGAGGCTTATGGCTGGATTg                                                                                                                             >  1:157230/1‑141 (MQ=255)
              tGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTg                                                                                                                             <  2:1052950/141‑1 (MQ=255)
               gggTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGt                                                                                                                            >  2:1004553/1‑141 (MQ=255)
               gggTGAATAATGAGGAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATACCAAAACAAGCATCTGCTAAAAAACCTTATGGCTGGATTGt                                                                                                                            >  2:732932/1‑141 (MQ=255)
                gtggtagagtCAGCAGCGATTATTTATTTAATATCGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTc                                                                                                                           <  2:702077/132‑1 (MQ=255)
                ggTTTATATTCCGCAGCGATTATTCATTTAATATTTCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTGATGGCTGGATTGTc                                                                                                                           <  2:688597/141‑1 (MQ=255)
                 gtgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCa                                                                                                                          <  1:867811/141‑1 (MQ=255)
                  tgtATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCAt                                                                                                                         <  1:436214/141‑1 (MQ=255)
                      tatTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGa                                                                                                                     <  2:473682/141‑1 (MQ=255)
                      tagtCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCCACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGa                                                                                                                     <  1:254340/138‑1 (MQ=255)
                       atTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAAGATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGAc                                                                                                                    <  2:773945/141‑1 (MQ=255)
                        ttCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACg                                                                                                                   <  1:973769/141‑1 (MQ=255)
                          cagcagCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACggt                                                                                                                 >  1:418036/1‑139 (MQ=255)
                           agcagcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACgtgt                                                                                                                >  2:797126/1‑141 (MQ=255)
                           agcagcGATGATTCAGTTTATATTGCACGGTATTTTTAAAGCAACATTATTTCTAAAGACATTTACGATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTCATGGCTGGCTTGTCATGGGACgtgt                                                                                                                <  1:274883/141‑1 (MQ=255)
                             cagcGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTAt                                                                                                              >  1:636983/1‑141 (MQ=255)
                                   ttattCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCta                                                                                                        <  1:959736/141‑1 (MQ=255)
                                    tattGATTTAATATTGGCTGGTATTTTTAAAGCAACATTGTGTTTACACTCAGGTTCTATCGTTAAGCGATTCAATATTCCAAAACAAGCCTCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtat                                                                                                       <  2:237510/141‑1 (MQ=255)
                                    tattCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtat                                                                                                       <  2:237217/141‑1 (MQ=255)
                                    tattCATTTAAGATTGCACGGTAGTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtat                                                                                                       <  2:950535/141‑1 (MQ=255)
                                       tCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCCTTACTGAAAGAAGCTTCTGGCTGGATTGTCATGGGACGTGTATTAGCtattat                                                                                                    >  1:865498/1‑141 (MQ=255)
                                       tCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtattat                                                                                                    >  1:9634/1‑141 (MQ=255)
                                       tCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATAAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCtattat                                                                                                    >  1:230071/1‑141 (MQ=255)
                                         aTTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCg                                                                                                  >  1:1130636/1‑141 (MQ=255)
                                         aTTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGGGTATTAGCTATTATCg                                                                                                  >  1:177093/1‑141 (MQ=255)
                                          tttAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTAGTAGCTATTATCGt                                                                                                 >  1:347469/1‑141 (MQ=255)
                                          tttAATATTCCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGt                                                                                                 <  1:374644/141‑1 (MQ=255)
                                           ttAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTg                                                                                                <  2:264516/141‑1 (MQ=255)
                                            tAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATCTTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATTGGACGTGTATTAGCTATTATCGtcg                                                                                               >  2:119745/1‑139 (MQ=255)
                                              atatTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCa                                                                                             <  1:1156655/141‑1 (MQ=255)
                                               tatTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCAt                                                                                            <  1:1090105/141‑1 (MQ=255)
                                                atTGCGCGGTTTTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCAtt                                                                                           <  2:596695/141‑1 (MQ=255)
                                                atTGCACGGTATTTTTAAAGAAACATTATTTTTCCATTAACGTTTTTTCGTGAAGCGATTCAATATTCAAAAACAAGCATCTGCTAAAGAAGCTTATGTCGGGATTGTCATGGGGCGTGTATTAGCTATTATCGTGGCAtt                                                                                           >  2:939739/1‑141 (MQ=255)
                                                  ttccccgTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTc                                                                                         <  2:82706/135‑1 (MQ=255)
                                                  tGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTc                                                                                         <  1:22938/141‑1 (MQ=255)
                                                  tGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTc                                                                                         <  1:534220/141‑1 (MQ=255)
                                                  tGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTc                                                                                         <  1:794433/141‑1 (MQ=255)
                                                      cGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATGATCGTGGCATTTCTAtt                                                                                     >  2:113538/1‑141 (MQ=255)
                                                       ggTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTAttt                                                                                    >  2:83073/1‑141 (MQ=255)
                                                            ttttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGAt                                                                               <  2:1033660/141‑1 (MQ=255)
                                                            ttttAAAGCAACATTATTTATACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGAt                                                                               >  1:894251/1‑141 (MQ=255)
                                                            ttttAAAGCAACAGTATTTTTACAATCAGCTTTTATGTTGAAGCGATAAGAAATTTATAATGAATCTGCGTCAAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCAATTATCGTGGGCTTTCTATTTTGGAt                                                                               >  2:1151195/1‑141 (MQ=255)
                                                             tttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATg                                                                              >  2:522611/1‑141 (MQ=255)
                                                             tttAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGAATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTAGTAGCTATTATCGTGGCATTTCTGTTTTGGATg                                                                              >  2:400148/1‑141 (MQ=255)
                                                                     aaCATTATTTTGACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGa                                                                      <  2:958428/141‑1 (MQ=255)
                                                                      aCATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCCTTTCTATTTTGGATGAGTAGGGAc                                                                     >  1:189742/1‑141 (MQ=255)
                                                                      aCATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGACTAGGGAc                                                                     >  2:23320/1‑141 (MQ=255)
                                                                       cATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACa                                                                    >  1:300890/1‑141 (MQ=255)
                                                                         ttattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTACTTTGGATGAGTAGTGACAGa                                                                  <  1:723846/141‑1 (MQ=255)
                                                                          tattTTTACAATCAGTTTCTATCGTGAAGCGATTCAATATTCCAAATCAAGCATCTGCTAAAGAAGTTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGaa                                                                 <  2:832635/141‑1 (MQ=255)
                                                                          tattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGaa                                                                 >  2:1153999/1‑141 (MQ=255)
                                                                          tattTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGaa                                                                 >  1:980331/1‑141 (MQ=255)
                                                                           attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAg                                                                >  1:617700/1‑141 (MQ=255)
                                                                           attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAg                                                                >  1:542778/1‑141 (MQ=255)
                                                                           attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAg                                                                >  1:70655/1‑141 (MQ=255)
                                                                           attTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGATGGATTGTCATGGGCCGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTggacgaag                                                                >  2:467413/1‑134 (MQ=255)
                                                                             ttttACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTg                                                              <  1:1161935/141‑1 (MQ=255)
                                                                                   ttgccggTTCTATCGTGAAGCGATGCAATATTCCAAAACAAGCATCTGCCAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATg                                                        <  1:838920/136‑1 (MQ=255)
                                                                                   attCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATg                                                        <  1:1093827/139‑1 (MQ=255)
                                                                                    aTCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGa                                                       >  2:1074421/1‑141 (MQ=255)
                                                                                     tCAGGTTCTATCGTGAAGCGATTCGATATTCCAAAACAAGCATCTGCTAAAGACGCTTAGGGGTGGATTGTCATGGGACGTGTATTAGCGATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGaa                                                      <  2:156916/141‑1 (MQ=255)
                                                                                     tCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGaa                                                      >  1:941003/1‑141 (MQ=255)
                                                                                      aagtttCTATCGTAAAGCGATTAAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAg                                                     <  2:157230/137‑1 (MQ=255)
                                                                                             tATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAg                                              <  2:223560/141‑1 (MQ=255)
                                                                                             tATCGGGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAg                                              <  2:751672/141‑1 (MQ=255)
                                                                                               tCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGCGACAGAACTGCATATGAAGTGTTAAGTg                                            <  1:774026/141‑1 (MQ=255)
                                                                                                    aaGTGATTTGATATTGCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGGGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTc                                       <  1:433499/141‑1 (MQ=255)
                                                                                                      gCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTCTGGCTGGATTGTCATGGGACGTGTATTAGCTATTCTTGTAGGGGTGCTATTTTGGATGAGTAGTGACAGAGGGTCATAGGAAGTGTTAATTGCACTCAt                                     >  1:274746/1‑141 (MQ=255)
                                                                                                       cGATTCAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGGACTCAtt                                    >  2:184156/1‑141 (MQ=255)
                                                                                                         aTTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCt                                  <  2:809078/141‑1 (MQ=255)
                                                                                                           tCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAg                                <  2:608607/141‑1 (MQ=255)
                                                                                                            cAATATTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAgg                               <  2:939872/141‑1 (MQ=255)
                                                                                                             aaTATTCCAAAACAAGAATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGa                              >  1:591980/1‑141 (MQ=255)
                                                                                                              atatTCCAAAACCAGCATCGGCTAAAGAAGCTTATGGCTGGATTGGCATGGGACGTGTATCCGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTCGGAt                             <  2:895872/141‑1 (MQ=255)
                                                                                                               tatTCCAAAACAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATg                            >  2:1078234/1‑141 (MQ=255)
                                                                                                                       aaCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTAc                    <  1:384474/141‑1 (MQ=255)
                                                                                                                        aCAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTGGGATAAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACt                   >  1:1177473/1‑141 (MQ=255)
                                                                                                                         cAAGCATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACtt                  <  1:257641/141‑1 (MQ=255)
                                                                                                                          aaGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTg                 <  2:387792/141‑1 (MQ=255)
                                                                                                                            gCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCTTTACTTGTa               >  1:1033604/1‑141 (MQ=255)
                                                                                                                            gCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTa               >  1:1033170/1‑141 (MQ=255)
                                                                                                                             cATCTGCTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTAt              >  2:699091/1‑141 (MQ=255)
                                                                                                                                cTGATAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCtt           <  2:1021499/141‑1 (MQ=255)
                                                                                                                                   cTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGa        >  1:490870/1‑141 (MQ=255)
                                                                                                                                   cTAAAGAAGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGCTGGTCATTACTTGTATCTTGGa        >  2:1017724/1‑141 (MQ=255)
                                                                                                                                          gcGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATCaaa  <  1:431626/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
AGTTCAATGTGCATTGGGTGTATATTCAGCAGCGATTATTCATTTAATATTGCACGGTATTTTTAAAGCAACATTATTTTTACAATCAGGTTCTATCGTGAAGCGATTCAATATTCCAAAACAAGCATCTGCTAAAGACGCTTATGGCTGGATTGTCATGGGACGTGTATTAGCTATTATCGTGGCATTTCTATTTTGGATGAGTAGTGACAGAAGTGCATATGAAGTGTTAAGTGCACTCATTCTAGGATGGTCATTACTTGTATCTTGGAATCAAA  >  CP000730/478364‑478641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: