Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 629,681 C→A 27.9% L84I (CTA→ATA)  USA300HOU_0564 → possible 3‑hexulose‑6‑phosphate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730629,6810CA27.9% 148.7 / 64.0 100L84I (CTA→ATA) USA300HOU_0564possible 3‑hexulose‑6‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (34/38);  new base A (15/13);  total (49/51)
Fisher's exact test for biased strand distribution p-value = 6.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.29e-01

Only 100 of 102 total aligned reads displayed.

CAACGAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAT  >  CP000730/629542‑629818
                                                                                                                                           |                                                                                                                                         
cAACGAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGGAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTTGCGCGGATGTGATTACAGTAca                                                                                                                                          >  2:284604/1‑140 (MQ=255)
    gAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGgt                                                                                                                                      <  1:1180623/141‑1 (MQ=255)
      aGGTTTACGAGCAGTTAAACATATGGCAGACAACATTAGTAATTTACAGGTGTTAACAGACATGTAAAGTAAAGAAGCAGCTGATTAAGAACTTAGCCAAGGGATGAAATTTGGCGTGTATGTAATTACAATACTAGgtgt                                                                                                                                    <  2:45179/141‑1 (MQ=255)
      aGGTTTACCAGCAGTTAAACATCTTGCAGACAACATTACTAATGTAAAAGAATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGgtgt                                                                                                                                    <  2:950696/141‑1 (MQ=255)
      aGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGgtgt                                                                                                                                    >  2:468956/1‑141 (MQ=255)
       ggTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGtt                                                                                                                                   >  1:206336/1‑141 (MQ=255)
            acaagcaaTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCaga                                                                                                                              <  2:352722/138‑1 (MQ=255)
            aCCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCaga                                                                                                                              <  2:1090348/141‑1 (MQ=255)
            aCCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCaga                                                                                                                              <  2:1101059/141‑1 (MQ=255)
            aCCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCaga                                                                                                                              <  2:626279/141‑1 (MQ=255)
            aCCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCaga                                                                                                                              <  2:46549/141‑1 (MQ=255)
             ccAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCACTTAAACGTGACGCGGATGTAATTACAATAATAGGTGTTGCagaa                                                                                                                             >  1:809611/1‑141 (MQ=255)
             ccAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCagaa                                                                                                                             >  1:952094/1‑141 (MQ=255)
              caaaagTTAAACATATGTCAGACCACATTAGTAATGTAAAAGTAACAGCACACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATATGGACCATCTGTAATTACAATACTAGGTGTTGCagaag                                                                                                                            <  1:284604/137‑1 (MQ=255)
               agcagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCagaaga                                                                                                                           <  1:1179086/141‑1 (MQ=255)
               agcagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCagaaga                                                                                                                           <  2:740387/141‑1 (MQ=255)
               agcagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCagaaga                                                                                                                           <  1:550325/141‑1 (MQ=255)
               agcagTGAGACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCagaaga                                                                                                                           <  2:796224/141‑1 (MQ=255)
                 cagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGGAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATg                                                                                                                         >  2:74500/1‑141 (MQ=255)
                  agTTAAACATATGGCAGACAACATTAGTAATGTAAACTGATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGc                                                                                                                        >  2:491937/1‑141 (MQ=255)
                     tAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATc                                                                                                                     <  2:1179281/141‑1 (MQ=255)
                     tAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAAGTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATc                                                                                                                     <  2:591111/141‑1 (MQ=255)
                      aaaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCa                                                                                                                    >  1:695912/1‑141 (MQ=255)
                      aaaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCa                                                                                                                    >  1:1195561/1‑141 (MQ=255)
                         cATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAAtt                                                                                                                 <  2:580868/141‑1 (MQ=255)
                         cATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAAtt                                                                                                                 >  1:1132822/1‑141 (MQ=255)
                         cATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAAATACCACAACAGTGGTTGCAGAAGATGCATCAAtt                                                                                                                 >  1:321585/1‑141 (MQ=255)
                           tatGGCAGATAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATGATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTaa                                                                                                               >  2:636732/1‑141 (MQ=255)
                           tatGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTaa                                                                                                               <  1:447638/141‑1 (MQ=255)
                           aatGGCAGACAAAAATAGTAATGTAAAAGTATTAGCAGACATGAAAATTAGAGATGCAGCTGATTATGAATTTAGCCAAGAAATTAAATTTGGCGCGGTTGTGGCTACAAGAATAGGTGTTGCAGAAGATGAATCAATTaa                                                                                                               <  1:876020/140‑1 (MQ=255)
                            atGGCAGACAAAATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTaaa                                                                                                              <  1:927997/141‑1 (MQ=255)
                               gCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAagca                                                                                                           >  2:1070048/1‑141 (MQ=255)
                               gCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAagca                                                                                                           >  1:954521/1‑141 (MQ=255)
                                cAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAagcag                                                                                                          <  1:19629/141‑1 (MQ=255)
                                    aaacaTTACTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTAt                                                                                                      <  2:924384/140‑1 (MQ=255)
                                     aacaTTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTAtt                                                                                                     >  2:262897/1‑141 (MQ=255)
                                       aaTTAGGAGTGTAAAAGTAGTAGCAGACATGAAAATTAGAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGAGCGGATGTAATTACAATACTAGGTGTGGCAGAAGATCCATTAATTAAAGCAGCTATTga                                                                                                   <  2:411616/140‑1 (MQ=255)
                                         ttAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTgaag                                                                                                 >  2:1141310/1‑141 (MQ=255)
                                          tAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTgaaga                                                                                                >  1:786752/1‑141 (MQ=255)
                                            gTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGaagaag                                                                                              >  1:223157/1‑141 (MQ=255)
                                                tGTAAAAGTATTAGCAGACACGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCa                                                                                          <  2:266384/141‑1 (MQ=255)
                                                agTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCa                                                                                          <  2:316708/140‑1 (MQ=255)
                                                      aGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCGGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaaaa                                                                                    >  1:513841/1‑141 (MQ=255)
                                                      aGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaaaa                                                                                    >  1:389626/1‑141 (MQ=255)
                                                         aTTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAaataa                                                                                 >  2:354943/1‑141 (MQ=255)
                                                           tAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  2:702335/1‑141 (MQ=255)
                                                                gACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATACTAAACaa                                                                          >  2:94013/1‑141 (MQ=255)
                                                                gACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACaa                                                                          <  2:643467/141‑1 (MQ=255)
                                                                 aCATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAAt                                                                         <  2:878499/141‑1 (MQ=255)
                                                                   aTGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTa                                                                       >  1:160723/1‑141 (MQ=255)
                                                                     gAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACt                                                                     >  2:153518/1‑141 (MQ=255)
                                                                      aaaaTTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTa                                                                    >  2:360976/1‑141 (MQ=255)
                                                                      aaaaTTATAGATGCAACTGGGTATGAAGTTAGCCAAGCAATGAAGTGCAGCGCGGCTGTAATTCCAAGACGAGGAGTGCCAGGGGATGAGGCACGGAAAGCAGCGATGTAAGCAGCTCACACAAATAATTAACAAttcata                                                                    >  2:531169/1‑137 (MQ=255)
                                                                         aTTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGtt                                                                 >  2:681128/1‑141 (MQ=255)
                                                                                aTGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTAGATATGa                                                          >  2:986617/1‑141 (MQ=255)
                                                                                 tGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGAt                                                         >  2:1078297/1‑141 (MQ=255)
                                                                                  tcAGCTGATTAAGAAGTTAGCCAAGCAATTGAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATACTAAACAATTACTAGTTGATATGAtt                                                        <  2:799883/140‑1 (MQ=255)
                                                                                    aGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGc                                                      <  1:468956/141‑1 (MQ=255)
                                                                                     gCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCt                                                     <  2:432188/141‑1 (MQ=255)
                                                                                       tGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGt                                                   >  2:146407/1‑141 (MQ=255)
                                                                                       tGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGt                                                   <  1:74500/141‑1 (MQ=255)
                                                                                        gagtatcgaGTTAGCCAAACAATTAAATTTGGCGCGGATGTAATTAAAATAATATGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGtt                                                  <  2:965923/133‑1 (MQ=255)
                                                                                           tATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATGCTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTGTTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGGTTGCTGTTCaa                                               >  1:303963/1‑141 (MQ=255)
                                                                                               aaGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGAtt                                           <  1:360837/141‑1 (MQ=255)
                                                                                                  ttAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAg                                        <  1:124294/141‑1 (MQ=255)
                                                                                                    aGCCAAGCAATTAAAGTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGaa                                      <  2:384583/141‑1 (MQ=255)
                                                                                                     gCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTGGaaa                                     >  1:896786/1‑141 (MQ=255)
                                                                                                      ccAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGaaaa                                    <  2:594313/141‑1 (MQ=255)
                                                                                                       cAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAAGTACTAGTTGATATGATTGCTGTTCAAGATTTAGaaaaa                                   >  2:26637/1‑141 (MQ=255)
                                                                                                       cAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGaaaaa                                   <  2:323787/141‑1 (MQ=255)
                                                                                                        aaGCAATTAAAATTGGCGCGGATGTAATTACAATAATAGGTGTTACAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCACATAAAAATAATAAACAATAACTAGTTAGAATGATTGCTGTTCAAGACTTGGaaaaag                                  >  2:392451/1‑140 (MQ=255)
                                                                                                         aGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACg                                 >  1:329655/1‑141 (MQ=255)
                                                                                                           cAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTg                               <  2:458872/141‑1 (MQ=255)
                                                                                                             aTTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCa                             >  2:1178742/1‑141 (MQ=255)
                                                                                                               tAAATTGGGCGTGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaa                           <  2:582472/141‑1 (MQ=255)
                                                                                                                 aaTTTGGCGCGGATGTAATTACAATCATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAg                         >  1:1186748/1‑141 (MQ=255)
                                                                                                                 aaTTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAACCAATTACTAGTTGATATGATTGCAGTTCAAGATTTAGAAAAACGTGCAAAAg                         >  1:1056278/1‑141 (MQ=255)
                                                                                                                 aaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAg                         >  1:971579/1‑141 (MQ=255)
                                                                                                                 aaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGGTCAAGATTTAGAAAAACGTGCAAAAg                         >  1:592206/1‑141 (MQ=255)
                                                                                                                        cgcgGATGTAATGACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGa                  <  2:168637/141‑1 (MQ=255)
                                                                                                                         gcgGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGAt                 <  2:329655/141‑1 (MQ=255)
                                                                                                                            gATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaa              >  2:228203/1‑141 (MQ=255)
                                                                                                                            gATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTAATAAAAATAATAAACAATTGCTAGTAAATATGATTGCTGTTAAGGACTTCGAGAAACGTGCAAACGAACTAGATGaa              >  2:331520/1‑141 (MQ=255)
                                                                                                                             aTGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaaa             <  1:994587/141‑1 (MQ=255)
                                                                                                                             aTGTAATTACAATACTAGGTGATGCAGAAGATGCAACAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaaa             <  1:8449/141‑1 (MQ=255)
                                                                                                                             aTGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaaa             <  2:434022/141‑1 (MQ=255)
                                                                                                                             aTGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaaa             <  2:96529/141‑1 (MQ=255)
                                                                                                                              tGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAACCACTTCTAAGTCCATATTAGTTCTGTTCAAAACTTAGAAAAACGTGCAAAAGAGCTAGATGAAAt            <  2:844526/141‑1 (MQ=255)
                                                                                                                              tGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAAt            >  1:1063859/1‑141 (MQ=255)
                                                                                                                              tGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAAt            <  2:438090/141‑1 (MQ=255)
                                                                                                                                 aaTTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTGGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATggg         <  1:959427/141‑1 (MQ=255)
                                                                                                                                  aTTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGt        >  1:1021296/1‑141 (MQ=255)
                                                                                                                                  aTTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGt        >  1:752652/1‑141 (MQ=255)
                                                                                                                                  aTTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGt        >  2:898568/1‑141 (MQ=255)
                                                                                                                                      cAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTg    <  2:1132822/141‑1 (MQ=255)
                                                                                                                                        atgcTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCGATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAt  <  2:200609/138‑1 (MQ=255)
                                                                                                                                        aTACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGATCTAGTTGAAATGGGTGCTGAt  <  1:611171/141‑1 (MQ=255)
                                                                                                                                        aTACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAt  >  2:458580/1‑141 (MQ=255)
                                                                                                                                        aTACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACCTGCAAAAGAACTAGATGAACTGGGTGCTGAt  >  2:272755/1‑141 (MQ=255)
                                                                                                                                        aTACTAGGTGTTGCAGAAGATGCACAACGAAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAt  >  1:285362/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                         
CAACGAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAT  >  CP000730/629542‑629818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: