Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 111,516 C→A 35.6% Q196K (CAA→AAA)  USA300HOU_0110 → possible staphylococcal tandem lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730111,5160CA35.6% 58.6 / 54.2 67Q196K (CAA→AAA) USA300HOU_0110possible staphylococcal tandem lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (17/26);  new base A (7/17);  total (24/43)
Fisher's exact test for biased strand distribution p-value = 4.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.17e-01

GAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAT  >  CP000730/111378‑111652
                                                                                                                                          |                                                                                                                                        
gAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCa                                                                                                                                         <  2:537279/140‑1 (MQ=255)
 aGGAACTGAAAGAAAAAAAAAAAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCaa                                                                                                                                        <  2:36342/140‑1 (MQ=21)
      gTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATGTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCa                                                                                                                                   <  1:70591/140‑1 (MQ=255)
         aaaGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAAtt                                                                                                                                <  1:248645/140‑1 (MQ=255)
          aagaagAAAACCTAAAAAAAGAAATCGAAAACGTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTa                                                                                                                               <  2:309270/140‑1 (MQ=18)
          aagaagAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATAAATTa                                                                                                                               >  2:385277/1‑140 (MQ=255)
            gaataaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAAc                                                                                                                             <  1:518097/140‑1 (MQ=255)
            gaagaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAAc                                                                                                                             >  1:529735/1‑140 (MQ=255)
             aagaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTTCTCTATATTTAAATATTAAAGATTTAATGAATTATAAAGATGGAGATATAGCATATAATCCAGAAGTCTCGAGTTATTCGGCTAAAGATCAATTAACt                                                                                                                            >  2:204320/1‑140 (MQ=14)
             aagaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACt                                                                                                                            <  1:370919/140‑1 (MQ=255)
               gaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTaa                                                                                                                          <  1:503062/140‑1 (MQ=255)
               gaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTaa                                                                                                                          >  2:468747/1‑140 (MQ=255)
                aaaaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAat                                                                                                                         <  2:326125/140‑1 (MQ=255)
                  aaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGATATATATCATATAATCAAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatga                                                                                                                       >  1:43450/1‑140 (MQ=255)
                   aaaTAAAAAAAGAAATCGAAGACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatgat                                                                                                                      <  2:516046/138‑1 (MQ=255)
                   aCATAAAAAAAGAAATCGAAAACTTTAAGTTTTCTGCGTAAAAGGGAACTTTTGAAGATTTAATGCATTATAAAGATGGAGATATATCATATAATCCAGAGGTACCGAGTTATTCGGCTAAATATCAATTAACTAatgat                                                                                                                      >  1:265024/1‑140 (MQ=14)
                    caaaaaaaaaGAAAACGAAAAATTTAAGGTTCTTGCGCAAAAGAGCAATTTCAAAGATTTAAGGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCAGAGTTATTCAGCTCAATATCAATTAACTAatgatg                                                                                                                     <  2:242801/137‑1 (MQ=18)
                    cATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatgatg                                                                                                                     <  1:60295/140‑1 (MQ=255)
                    cATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTAAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatgctg                                                                                                                     >  2:369079/1‑140 (MQ=255)
                     aaaaaaaaaGAAAGCGAAAAATTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGTTCTATCTTATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAAtgatga                                                                                                                    <  1:290023/138‑1 (MQ=21)
                     aTAAAAAAAGAAATAGTAAACTCTAAGTGTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATATAGATGGAGATATATCATATAAGCCAGAGGTGCCGACTTATTCAGCTCAATATCAATTAACTAAtgatga                                                                                                                    <  2:158909/140‑1 (MQ=18)
                      tAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCCATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGATATTCGGCTAAATATCAATTAACTAATgatgat                                                                                                                   >  1:99619/1‑140 (MQ=255)
                         aaaaaGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATtat                                                                                                                <  1:387081/140‑1 (MQ=255)
                             ggAATTCTAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATAACAATTAACTAATGATGATTATAATg                                                                                                            >  2:142812/2‑140 (MQ=18)
                             agtaatagaattcTTTAAGATTTTTGCGCAATATAGCAATTTTATAGATTTAATGAATTATACAGATGGGGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATg                                                                                                            <  2:541101/128‑1 (MQ=18)
                             acaaaTCTATAACTTTAAGTTTTTTGCACAATATGGCTATTTTAATCAGTTAATGATTTTTATAGTTGGAGATATATCATAGAATCCAGAGGTGCCGAGTTAGTCGGCTAAATATCAATGAACTAATGATGATTATAATg                                                                                                            <  1:195674/138‑1 (MQ=14)
                             aGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATg                                                                                                            <  1:167452/140‑1 (MQ=255)
                               aattCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTa                                                                                                          <  2:183423/137‑1 (MQ=255)
                                 aTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTTAAGATTTAATGAATTATAAAGATTGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTaaa                                                                                                        <  2:518185/140‑1 (MQ=255)
                                 aTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTaaa                                                                                                        >  2:291753/1‑140 (MQ=255)
                                  tCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTaaaa                                                                                                       <  1:506209/140‑1 (MQ=255)
                                       aaCTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTACTGAATTATAAAGATGGAGATATATCATATAATACAGAGGTTCCGAGTTATTCAGCCCAATATCAATTAACTAATAATGTTTATAATGTAAAACAAtt                                                                                                  >  1:199829/1‑140 (MQ=255)
                                         cTTTATGTTTTTTGCGCAATATTGGTATTTTTATGATTTTATGATTTATAAAGATGGAGATATATCATATAGTCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTAc                                                                                                <  1:252393/140‑1 (MQ=14)
                                         cTTTAAGTTTTTTGCCCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTAc                                                                                                <  1:29332/140‑1 (MQ=255)
                                            tAAGTTTTTTGCGCAATTTTGGAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACgca                                                                                             <  2:495868/140‑3 (MQ=17)
                                            tAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACgca                                                                                             <  2:388604/140‑3 (MQ=255)
                                                     ttcgcAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATg                                                                                    <  1:447401/138‑1 (MQ=255)
                                                     tGCGCAATTGAGCAATTTTTAAACTTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGCAAAAGATATg                                                                                    <  1:370207/140‑1 (MQ=14)
                                                     tGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAATACAATTACGCAAAAGATATg                                                                                    <  1:334040/140‑1 (MQ=17)
                                                     tGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATg                                                                                    <  1:278094/140‑1 (MQ=255)
                                                     ggcgcAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATg                                                                                    <  2:60147/139‑1 (MQ=255)
                                                             ataGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTTCCGAGTTATTCGGCTAAATATCAAATTACTAATGAGGAATTTAAATGAAAACAATTAAGCAAAAGATATgcatatgtt                                                                            >  2:290725/1‑132 (MQ=14)
                                                               aGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGTTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACcaac                                                                          <  1:348031/140‑1 (MQ=255)
                                                                         aaGATTTAATGAATCATAAGGATGGAGATATATCATATAATCCACAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAgcg                                                                >  1:302381/1‑140 (MQ=255)
                                                                          aGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAAGAATTACGTAAAAGATATGACATACCAACCAATAAAgcgc                                                               >  2:160426/1‑140 (MQ=255)
                                                                          aGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAgcgc                                                               >  1:449891/1‑140 (MQ=255)
                                                                            aTTAAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCg                                                             <  2:481761/140‑1 (MQ=255)
                                                                             tttAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGa                                                            <  2:155972/140‑1 (MQ=255)
                                                                             tttAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGa                                                            >  1:284125/1‑140 (MQ=255)
                                                                                  tGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCGATTAACTAATGAAGATTATAATGTAAAACAATTACGAAAAAGATATGACATAACAAGGAAAAAAACGCCGAAgaag                                                       >  2:408614/1‑137 (MQ=17)
                                                                                  tGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCtg                                                       <  1:444282/140‑1 (MQ=255)
                                                                                      ttATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCtgttgt                                                   <  1:535356/140‑1 (MQ=255)
                                                                                        ataAAGATTGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGttgttg                                                 <  1:84710/140‑1 (MQ=255)
                                                                                              aTGGAGATATATCATATAATCCAGAGGTGCAGAGTTAGTCAGCTCAATATCAATTAACTAATGATGATTATAATTTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGt                                           <  2:265997/140‑1 (MQ=255)
                                                                                                  agaTATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAg                                       >  2:317976/1‑140 (MQ=255)
                                                                                                   gaTATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAgg                                      >  1:78145/1‑140 (MQ=255)
                                                                                                   gaTATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGAGCCGAAGCTGTTGTTGAAAGGTAAAga                                      >  1:78121/1‑139 (MQ=255)
                                                                                                           atatAATCCATATGTGTCGAGTTATTCAGCTCAATATTTATTAACTTATGACGATTATAATGTAAAACAATTACGTAAAAGATAGTACATACCAACAAATAAAGCGCTGAAGCTGTTGTTGAAAGGTACAGGTAATTTaa                              <  2:75311/140‑1 (MQ=14)
                                                                                                             ataATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTGGAAAGGTACAGGGAATCTaaaa                            >  2:131860/1‑140 (MQ=255)
                                                                                                             ataATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGATGTTGTTGAAAGGTACAGGGAATTTaaaa                            >  2:181528/1‑140 (MQ=255)
                                                                                                               aaTTCAGAGGTGCCGAGTTATTCAGCTCAATATCCATTAATTAATGAGGATTATAATGTAAAATGATTACGTAATAGATATGACATTCCAACTAATAGATCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAgg                          <  2:429571/140‑1 (MQ=14)
                                                                                                                aTCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGt                         >  2:13791/1‑140 (MQ=255)
                                                                                                                   cAGAGGTGCCGAGTTATGCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTtca                      <  1:82478/140‑1 (MQ=255)
                                                                                                                            cGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGGAAACCAACTACGTAAACGATATGACATACCAACAAATAAAGCGCCGAAGTTGTTGTTGAAAGGTGCAGGGAATTTGAAAGGACACTCAGTTGGa             >  2:323044/1‑140 (MQ=14)
                                                                                                                                       gCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAt  <  2:449891/140‑1 (MQ=255)
                                                                                                                                       gCTCAATATCAAATAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAt  <  1:473880/140‑1 (MQ=255)
                                                                                                                                       gCTCAAGATCAATGAACTAATGATGATTATAATGTAAAACGATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAt  <  2:337230/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                        
GAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGTTGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAT  >  CP000730/111378‑111652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑