New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 120532363 (0.980)3 (0.050)
+AGCGAA
3/248 NT 6.2% intergenic (+459/‑365) USA300HOU_1131/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 = 1893309 33 (0.510)intergenic (‑1303/+177) rot/USA300HOU_1755 repressor of toxins Rot/lysophospholipase

CAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACT  >  CP000730/1205184‑1205460
                                                                                                                                           |                                                                                                                                         
cAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAGTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTGGAAGACCGCGGCTGGAACGGCACCCAAGGAAg                                                                                                                                          >  1:514280/1‑141 (MQ=17)
 aaTTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                                                                         >  2:718751/1‑141 (MQ=255)
  aTTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGACACCCTAGGAAggg                                                                                                                                        <  1:411915/141‑1 (MQ=255)
   ttAAGTGTAGACGAGTCATGTCTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAACACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa                                                                                                                                       <  2:251765/141‑1 (MQ=255)
     aaGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTCATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAcc                                                                                                                                     <  2:506059/141‑1 (MQ=255)
          tAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCGCCATAGGAAGGGACCcatca                                                                                                                                >  2:615433/1‑141 (MQ=255)
           aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat                                                                                                                               <  1:254722/141‑1 (MQ=255)
           aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat                                                                                                                               <  1:669598/141‑1 (MQ=255)
            gACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc                                                                                                                              <  2:211598/141‑1 (MQ=255)
            aaCGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc                                                                                                                              <  2:179020/140‑1 (MQ=255)
              cGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaa                                                                                                                            >  1:761134/1‑141 (MQ=255)
                 ttCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa                                                                                                                         >  1:340683/1‑141 (MQ=255)
                 ttCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa                                                                                                                         <  2:398039/141‑1 (MQ=255)
                   tatttCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATGAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                       <  2:18595/137‑1 (MQ=255)
                     tGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCt                                                                                                                     >  1:539432/1‑141 (MQ=255)
                     tGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGACGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGACGGGACCCATTATCAAAAATTCt                                                                                                                     >  2:321474/1‑141 (MQ=255)
                         ttATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGACGCCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAttt                                                                                                                 <  1:755144/141‑1 (MQ=255)
                         ttATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAttt                                                                                                                 <  1:733025/141‑1 (MQ=255)
                                  tAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGCAttt                                                                                                        >  2:108279/1‑141 (MQ=255)
                                    aaGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                      <  1:670665/141‑1 (MQ=255)
                                          ttAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTaa                                                                                                <  1:389227/141‑1 (MQ=255)
                                             aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt                                                                                             <  1:28247/141‑1 (MQ=255)
                                              aaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                                                                            <  2:471142/141‑1 (MQ=255)
                                               aGTAAACTTACATGTTAATACGAAGTATTAATGGCGAGACTCCTGAAGGGGCAGTGCCAGTCCCAGACCGAGGCTGAGACGGCACCCTCGGAAGGGGCCCATANTCCAAAATTCGATTTATAGAATTTTACAGTAATTTGc                                                                                           >  2:33218/1‑141 (MQ=17)
                                                      ttACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATgg                                                                                    >  1:438848/1‑141 (MQ=255)
                                                       tACATGTTAATACGTAGTATTGATGGCGAGACTTCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatactacgtattaacatgtaattttacttttaaatactttga                                                                                   >  2:507450‑M1/1‑85 (MQ=255)
                                                         cATGGTAAGACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCa                                                                                 <  2:178558/141‑1 (MQ=255)
                                                                 aaCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                                                                         <  2:304176/140‑1 (MQ=255)
                                                                    gtagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCa                                                                      <  2:740341/141‑1 (MQ=255)
                                                                     tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                                                                     >  1:346739/1‑141 (MQ=255)
                                                                      aggaTTAATGGCGAGACTCCCGAGGGAGCAGGGCCAGTCGAAGAACGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                    <  2:424713/138‑1 (MQ=255)
                                                                         aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCaa                                                                 >  2:582685/1‑141 (MQ=255)
                                                                           tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                               <  1:403316/141‑1 (MQ=255)
                                                                            aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCGGATGGGCATAGCGAAGCCATTCAATAc                                                              <  1:120911/141‑1 (MQ=255)
                                                                            aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCGTTCaaaag                                                              >  2:728617/1‑138 (MQ=255)
                                                                            aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATAc                                                              >  1:592207/1‑141 (MQ=255)
                                                                              tGGCGATACCCCCGCGGGAGCAGGGCCAGTCGAAGGCCGAGGCTGAGACGGCCCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGa                                                            <  2:601994/141‑1 (MQ=17)
                                                                               tgcaagaCCCCTGAGGGAACAGGGCCAGGCAAAAACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa                                                           <  1:299327/137‑1 (MQ=14)
                                                                               ggCGAGACTCCTGAGGGAGCAGTGCCAGTAGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATATTCCAGATGGGCATAGCGAAGCCATTCAATACGaa                                                           >  2:288069/1‑141 (MQ=255)
                                                                                 cGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattaatactacgtattaacatgtaattttacttttacatactttgaaaaaataagacatttttcccaacttgc                                                         >  1:589907‑M1/1‑59 (MQ=255)
                                                                                    gccTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                      <  1:278530/139‑1 (MQ=255)
                                                                                    gacttctcggggAGCAGTGCCAGTCGAAGATCGAGGCTGGGACGGCACTCTAGGAAGGGCCCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                      <  2:665678/132‑1 (MQ=17)
                                                                                    gaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGGGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                      <  2:126439/141‑1 (MQ=255)
                                                                                        ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtat                                                  >  1:566642/1‑141 (MQ=255)
                                                                                         cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATCCGAAGTATTGtata                                                 >  2:472580/1‑141 (MQ=255)
                                                                                             gggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATa                                             <  2:447155/141‑1 (MQ=255)
                                                                                              gtaGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                            <  1:725613/139‑1 (MQ=255)
                                                                                              ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCGTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                            <  1:321474/141‑1 (MQ=255)
                                                                                                aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATagag                                          >  1:4246/1‑141 (MQ=255)
                                                                                                  cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGaa                                        >  2:611255/1‑141 (MQ=255)
                                                                                                        cAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAcagcag                                  >  1:86194/1‑141 (MQ=255)
                                                                                                          gTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAAAGCAGTa                                >  2:671701/1‑141 (MQ=255)
                                                                                                            cGAAGACCGAGGCTGACACGGCACCCTAGGAAGGGTTCCATCATCAATAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAg                              <  2:598760/141‑1 (MQ=255)
                                                                                                             gAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGa                             >  1:672242/1‑141 (MQ=40)
                                                                                                              aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAt                            >  1:156427/1‑141 (MQ=38)
                                                                                                              aaGACCGAGGCTGAGACGGCACCCTAGGAACGGACCCATCATCAAAAATTCTAATTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGac                            >  2:467865/1‑140 (MQ=255)
                                                                                                               aggccGAGGCTGAGACGGCACCCTAGGAAGGGTCCGATAATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATa                           <  1:666216/138‑1 (MQ=255)
                                                                                                                 aCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAt                         >  2:479191/1‑141 (MQ=38)
                                                                                                                   cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAttt                       <  2:566642/141‑1 (MQ=38)
                                                                                                                       gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTaa                   >  1:681159/1‑141 (MQ=38)
                                                                                                                       gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTaa                   >  2:277894/1‑141 (MQ=38)
                                                                                                                          gagaCGGCACCCTAGGAAGGGACCCATCATCAAAAAGTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTa                >  2:505588/1‑141 (MQ=255)
                                                                                                                             aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATATTACAGTAATGTGACAGATGGGCAAAGCGAAACCATTCAATACGAAGAATAGTATAAATAGAGAACAACAGTAAGATAAATTTTAATTAGaa             >  2:657972/1‑141 (MQ=11)
                                                                                                                             aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTAGAGAATTTTAAAGTAATGTGCCAGATGGGCAAAGAGAAGACATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGGAAGATAATTTTTAATTAGaa             <  2:340683/141‑1 (MQ=14)
                                                                                                                                 cACGCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGACATTCAATACGAAGTATTGTGTAAAAAGAGAAAAGCAGTACAAAAATTTTTAATTGTAAAata         >  2:173068/1‑141 (MQ=11)
                                                                                                                                  aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAatat        >  2:749819/1‑141 (MQ=255)
                                                                                                                                   cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAatatt       >  2:194502/1‑140 (MQ=255)
                                                                                                                                   cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATc       >  1:638610/1‑141 (MQ=255)
                                                                                                                                     cTAGGAAagcgaagccattcaatactacgtattaacatgtaattttacttttaaatactttgaaaaaataagacatttttcccaacttgcacataaatgtaaaattcaataaaatgaattttctgtgttgggtcccttcgt     <  1:507450‑M1/141‑135 (MQ=255)
                                                                                                                                     cTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCtt     <  1:273195/141‑1 (MQ=255)
                                                                                                                                        ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtact  >  2:477441/1‑141 (MQ=255)
                                                                                                                                        ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAAAATCTtact  >  2:675411/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                         
CAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACT  >  CP000730/1205184‑1205460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.