New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2001491 =8 (0.120)6 (0.100) 4/246 NT 44.2% intergenic (‑100/+116) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
?CP000730 2179606 = NA (NA)intergenic (‑50/+262) rrl4/rrs4 23S ribosomal RNA/16S ribosomal RNA

CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATCGAA  >  CP000730/2001352‑2001629
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gcgagcgcttgactgaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaatcagcttgaattcataagaaataatcgctagtgttcgtaaGa                                                                                                                                           >  1:548005‑M1/140‑141 (MQ=255)
 cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtcaaagatatattttaccaagcaaaaccgagtgaataaagaggtttaaataagcttgaattcagaagaaataatcgctagtgttcgaaaGaa                                                                                                                                          <  1:445221‑M1/3‑1 (MQ=255)
 cgagcgcttgactaaaaagaaatcgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa                                                                                                                                          >  1:136315‑M1/139‑141 (MQ=255)
  gagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAac                                                                                                                                         >  1:392835‑M1/138‑141 (MQ=255)
   aggccttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca                                                                                                                                        >  1:355571‑M1/137‑141 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                       >  1:637809‑M1/136‑141 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                       >  1:637942‑M1/136‑141 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                       <  1:414082‑M1/6‑1 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagaggtttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                       <  2:251689‑M1/6‑1 (MQ=255)
     cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaacacc                                                                                                                                      <  1:704363‑M1/7‑2 (MQ=255)
     cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt                                                                                                                                      <  2:120677‑M1/7‑1 (MQ=255)
        ttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaagaacacccaa                                                                                                                                   <  2:402961‑M1/10‑5 (MQ=255)
                     atttgtaccttgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaatacgcttcaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTAt                                                                                                                      >  2:44382‑M1/119‑141 (MQ=255)
                     atttgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTAt                                                                                                                      >  2:476377‑M1/119‑141 (MQ=255)
                     aattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTAt                                                                                                                      >  2:476387‑M1/119‑141 (MQ=255)
                             attgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCaa                                                                                                              >  2:631842‑M1/111‑141 (MQ=255)
                                tatcTTATTCTATGTTTTCACCATTTTTATAAGTCAGACGTTAACATGATTTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCt                                                                                                           <  1:535795/138‑1 (MQ=1)
                                             ataattaaaatatagatcacaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActct                                                                                              >  2:763854‑M1/95‑141 (MQ=255)
                                                                      cggtAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTACTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCTGTTTTGCTTGGTaa                                                                     <  2:523909/138‑1 (MQ=0)
                                                                                            tgtagtaataGATTTATACGTGTTGTTACTCTTTTGCGTGTTTCTTCGAACAATACCGATTCTTTCTTTTGAATTCCAGCTTATTTCAACCTCTTTCCTCACATGCTTTTGCTCGTTAACATCTATATTTTACTTACTTAt                                               <  2:273297/132‑1 (MQ=0)
                                                                                                                          atcgctagtgttcgaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTTAATGTACAAATAATGGTggaa                 <  2:510868‑M1/124‑2 (MQ=255)
                                                                                                                             gtgAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACt              <  1:4465/141‑1 (MQ=33)
                                                                                                                             gtgAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACt              <  2:58197/141‑1 (MQ=33)
                                                                                                                                aGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGc           <  1:415702/141‑1 (MQ=35)
                                                                                                                                    ttCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGa       <  2:305760/141‑1 (MQ=39)
                                                                                                                                    ttCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGa       >  2:73739/1‑141 (MQ=39)
                                                                                                                                      cTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATc     >  2:524244/1‑141 (MQ=40)
                                                                                                                                        ttCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATCGa   >  1:743029/1‑141 (MQ=255)
                                                                                                                                         tCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATCGaa  >  1:214731/1‑141 (MQ=255)
                                                                                                                                         tCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTCACTTATCTCGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATCGaa  >  2:366002/1‑141 (MQ=255)
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CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGATCGAA  >  CP000730/2001352‑2001629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.