| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,386,969 | A→T | 6.9% | K117* (AAA→TAA) | marR → | MarR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,386,969 | 0 | A | T | 6.9% | 215.8 / 5.4 | 68 | K117* (AAA→TAA) | marR | MarR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (24/39); new base T (3/2); total (27/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAAATGACCTTATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCAAAAGTTTTA > CP000730/2386834‑2387105 | gAAAATGACCTTATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAaaaca < 2:714024/141‑1 (MQ=255) aaaTGACCTTATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATAAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAaaacaaa > 2:494611/1‑141 (MQ=255) aaTGACCTTATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTATTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAaaacaaac < 1:508528/141‑1 (MQ=255) cTTATAAAAGGAGAAAACAGTTGAGAGGATAAACCACAAGAGTTTTTAACTTTAACACCCAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCg < 2:458084/141‑1 (MQ=255) ttATACAAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGATTTTCCATTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCACCAAGCAGTAGTTGCCAAAACAAACATTTCGc < 1:59316/141‑1 (MQ=255) ttATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGc < 2:713530/141‑1 (MQ=255) ttATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGc < 1:436833/141‑1 (MQ=255) ataACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCaa < 2:416845/141‑1 (MQ=255) taACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAg < 1:35575/141‑1 (MQ=255) gTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCaa > 1:331241/1‑141 (MQ=255) aaaaCAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACAGCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGc > 1:435284/1‑141 (MQ=255) aaaaCAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGc < 2:103516/141‑1 (MQ=255) aaCAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCaa < 2:389340/141‑1 (MQ=255) actgTTTAGAGGATAAACTACTATAGTTTTTAACTTTAACACCTAAAGGGCATCAATTATATTAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAg < 2:421076/138‑1 (MQ=255) cAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGa < 1:456447/141‑1 (MQ=255) tAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCa > 2:581966/1‑141 (MQ=255) tAGAGGATAAACGACAAAAGCAATGCACGTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCa > 1:564162/1‑141 (MQ=255) agagGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCAt > 1:99169/1‑141 (MQ=255) agagGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATAAAATGCAAGAAACCAt > 1:694588/1‑141 (MQ=255) ggATAAACGGCAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATaaa < 2:697261/141‑1 (MQ=255) ggATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCCATAATTACTATTTGGCACCGCAAACAGTTCGCAAGATCAAATGCAAGAAACCATaaa < 1:369425/141‑1 (MQ=255) gATAAACGACAAAAGTTTTTAACTTTAACACCTAACGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAACGCTCCAACAATCAGTAGTGACCAAAACAATCATTTCGCAAGATCAAATGCAAGAAACCATAAAt < 2:409189/141‑1 (MQ=255) aaaCGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAAtgtg < 1:278841/141‑1 (MQ=255) aCGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGACACCATAAATGtgat > 2:322840/1‑141 (MQ=255) gACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGtgatga > 2:339326/1‑141 (MQ=255) aGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCaaa > 1:321337/1‑141 (MQ=255) gTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCTAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAAt > 1:536812/1‑141 (MQ=255) gTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCTAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAAt > 1:646523/1‑141 (MQ=255) gTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAAt > 2:649733/1‑141 (MQ=255) gTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGGGATGAATCAAAt > 1:316696/1‑141 (MQ=255) gTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAACTTGCTTCTCTTGCTGTACAAAACCTCCAACAAGCAGTAGTTCCCTAGACAAACATTTCGCAAGATCGAATGCAAGCAACCATCAAACTGATGAACCAAAt > 2:422300/1‑141 (MQ=255) ttttAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTc > 2:472672/1‑141 (MQ=255) taactttaacACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATg < 2:704086/141‑1 (MQ=255) taactttaacACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATg < 2:704105/141‑1 (MQ=255) taactttaacACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATg < 2:628982/141‑1 (MQ=255) tttaacACCTAAAGGGCATGAATTATATTAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAat < 1:709577/141‑1 (MQ=255) ttaacACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAata > 2:74064/1‑141 (MQ=255) acacCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAAtatta < 1:60573/141‑1 (MQ=255) cacCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAAtattat < 1:20361/141‑1 (MQ=255) acCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATattatt < 2:435284/141‑1 (MQ=255) ggtcATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAg < 1:709299/138‑1 (MQ=255) cATGAATTATATGAGATTGTTTGTGTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAATCCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGca < 1:52374/141‑1 (MQ=255) aTTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGAAGGCACACaa > 2:717645/1‑141 (MQ=255) atGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACt < 1:649733/141‑1 (MQ=255) aagaTTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTaa < 1:593420/140‑1 (MQ=255) tgtttggCTTGATGGACCAAACCTCCAACAAGCAGTCGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAg < 1:237593/141‑1 (MQ=255) tttgtCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGc < 2:331241/141‑1 (MQ=255) ttgtCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCt < 1:165930/141‑1 (MQ=255) ttgtCTTGATGTACAAAAGATACACCAATCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAAGca > 2:738361/1‑140 (MQ=255) tCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCAt > 1:263644/1‑141 (MQ=255) gATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATtaaa < 1:190155/141‑1 (MQ=255) aTGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATtaaaa > 2:707102/1‑140 (MQ=255) aTGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGAAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATtaaat < 2:746573/141‑1 (MQ=255) gTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATtaaataa < 1:664875/141‑1 (MQ=255) gTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATtaaataa < 1:435190/141‑1 (MQ=255) aaaGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCAc < 1:735375/141‑1 (MQ=255) aacaaGCAGTAGTTGCCAAAACAAACATTTCGCAAGCTCAAATGCAAGAAACCATAAATGAGACGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTc < 1:519201/141‑1 (MQ=255) acaaGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCa > 2:137496/1‑141 (MQ=255) caaGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCAc > 2:558821/1‑141 (MQ=255) aGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGTAATATTATTAAGGGAGGCACACAATGACTAATCCTGGCTTGCGAAATAAATCACCTATTTGCACCa < 1:563957/141‑1 (MQ=255) aGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCa < 1:732366/141‑1 (MQ=255) gCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATTAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCaa > 2:564265/1‑141 (MQ=255) gCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAAGATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATTAATTACCTATTTTCACCaa < 1:572445/141‑1 (MQ=255) cAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCaaa > 1:650567/1‑141 (MQ=255) cAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCaaa > 1:148746/1‑141 (MQ=255) tagtTGCCTAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCAAAAGt < 2:536812/141‑1 (MQ=255) tacgtGCCTAAACAAACATTTCGCAAGATCAAATGAAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCAAAAGt < 2:646523/137‑1 (MQ=255) tGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCAAAAGTTTTa > 1:102914/1‑141 (MQ=255) | GAAAATGACCTTATAACAGTAGAAAACAGTTTAGAGGATAAACGACAAAAGTTTTTAACTTTAACACCTAAAGGGCATGAATTATATGAGATTGTTTGTCTTGATGTACAAAAGCTCCAACAAGCAGTAGTTGCCAAAACAAACATTTCGCAAGATCAAATGCAAGAAACCATAAATGTGATGAATCAAATTCATGAAATATTATTAAGGGAGGCACACAATGACTAATCAAGGCTCATTAAATAAATCACCTATTTTCACCAAAAGTTTTA > CP000730/2386834‑2387105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |