New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1030884 =57 (1.090)3 (0.060) 3/234 NT 5.7% intergenic (+7/‑132) USA300HOU_0981/USA300HOU_0982 Trk family potassium (K+) transporter, membrane protein/possible 5'‑nucleotidase
?CP000730 1030933 = 48 (1.020)intergenic (+56/‑83) USA300HOU_0981/USA300HOU_0982 Trk family potassium (K+) transporter, membrane protein/possible 5'‑nucleotidase

GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTAAACTTAGATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1031033‑1030884
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttagattgctTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT  >  CP000730/1030933‑1031069
                                                                                                                                                                                                                                                                                                
GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAACAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTAAACT                                                                                                                                                    <  2:459688/141‑1
  TTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTAAACT                                                                                                                                                    >  2:319835/1‑139
  TTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTAAACT                                                                                                                                                    <  1:319835/139‑1
                                                CCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATT                                                                                                    >  2:497200/1‑141
                                                                                                          TCTAAGTTCCAGTTAAAATCTACATTAACTAAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAAAAATGAGAGGTGTAACATGATGGAAAAAAATGA                                          >  2:348153/1‑141
                                                                                                                      TTAAAATCTACATTAACTAAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGT                              >  1:529924/1‑141
                                                                                                                                      ctgAAATTTAGATTGCTTTTTTAGTGTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAAATAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTAC               <  1:287852/138‑1
                                                                                                                                           ACTTAGATTGCTTTTTTAGTTTGTCTTTTTAAATTATTATATAAGGCGATTGGTTTCGAACATGGTAAAATAGTAACAATGAGAGGAGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTAAG          >  2:142525/1‑141
                                                                                                                                             TTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGAT        <  1:234513/141‑1
                                                                                                                                              TAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATA       <  1:116196/141‑1
                                                                                                                                                  TTGCTTTTTTAGTTTGTAGTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCA   <  1:196540/141‑1
                                                                                                                                                   TGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTCGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAAAGCTTTTACATAAGTACGATATGCAT  >  2:191399/1‑141
                                                                                                                                                                                                                                                                                                
GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTAAACTTAGATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1031033‑1030884
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttagattgctTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT  >  CP000730/1030933‑1031069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.