| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1030884 = | 57 (1.090) | 3 (0.060) | 3/234 | NT | 5.7% | intergenic (+7/‑132) | USA300HOU_0981/USA300HOU_0982 | Trk family potassium (K+) transporter, membrane protein/possible 5'‑nucleotidase |
| ? | CP000730 | 1030933 = | 48 (1.020) | intergenic (+56/‑83) | USA300HOU_0981/USA300HOU_0982 | Trk family potassium (K+) transporter, membrane protein/possible 5'‑nucleotidase | |||||
GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACTTAGATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1031033‑1030884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttagattgctTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT > CP000730/1030933‑1031069 GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAACAGCAATCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACT < 2:459688/141‑1 TTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACT > 2:319835/1‑139 TTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACT < 1:319835/139‑1 CCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTT‑TAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATT > 2:497200/1‑141 TCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAAAAATGAGAGGTGTAACATGATGGAAAAAAATGA > 2:348153/1‑141 TTAAAATCTACATTAACT‑AAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGT > 1:529924/1‑141 ctgAAATTTAGATTGCTTTTTTAGTGTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAAATAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTAC < 1:287852/138‑1 ACTTAGATTGCTTTTTTAGTTTGTCTTTTTAAATTATTATATAAGGCGATTGGTTTCGAACATGGTAAAATAGTAACAATGAGAGGAGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTAAG > 2:142525/1‑141 TTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGAT < 1:234513/141‑1 TAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATA < 1:116196/141‑1 TTGCTTTTTTAGTTTGTAGTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCA < 1:196540/141‑1 TGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTCGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAAAGCTTTTACATAAGTACGATATGCAT > 2:191399/1‑141 GTTTTCATTTTTTTCCATCATGTTACACCTCTCATTGTTACTAGTTTACCATTTTCGAAACCAATCGTCTTATAAAATAAGTTAAAAATACAAACTAAAAAAGCAATCTAAGTTCCAGTTAAAATCTACATTAACT‑AAACTTAGATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1031033‑1030884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttagattgctTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT > CP000730/1030933‑1031069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |