New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 244282146 (0.880)5 (0.110) 5/228 NT 11.3% intergenic (+18/+40) USA300HOU_2304/USA300HOU_2305 transcriptional regulator/hypothetical protein
?CP000730 = 2442838 38 (0.830)intergenic (+35/+23) USA300HOU_2304/USA300HOU_2305 transcriptional regulator/hypothetical protein

CGTCTATGTATCCAGTAACACATTCTACTTAACTGATGGTACAGACTATTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2442668‑2442821
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTTTCAAAGAATATATGATAACTGATGAAGCTAGAATAGTCTGT  <  CP000730/2442838‑2442708
                                                                                                                                                                                                                                                                                             
CGTCTATGTATCCAGTAACACATTCTACTTAACTGATGGTACAGACTATTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAA                                                                                                                                                  >  2:599294/1‑141
   CTATGTATCCAGTAACACATTCTACTTAACTGATGGTACAGACTATTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG                                                                                                                                               <  2:562743/141‑1
             AGTAACACATTCTACTTAACTGATGGTACAGACTATTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT                                                                                                                                     <  1:36227/141‑1
                              AACTAATGGTACCGACCATTCTAGCTTTATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTATTACATAATGATATTTCAAATTATATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAA                                                                                                                    <  1:40815/141‑1
                                                TTCTAGCTCCATTAGTTATCATATATACCTTGAAACCCTTGTAAGAAAATATAAGGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGTCTCAAGGCCATTCAATCATAACTTCCTTTTTT                                                                                                  <  2:272561/141‑1
                                                                  TCATATATTCTTTGAAACACTTGTAAAAAAATATAATGAGTATTTATTACATAATGATATTTCAAATTAGAAAAAAGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTA                                                                               <  2:31997/141‑1
                                                                             TTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAAT                                                                     >  2:156228/1‑141
                                                                                                           ATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTTTCAA                                       <  1:156228/141‑1
                                                                                                                                           AAAGGAAGTTATGATAGGCTCAAGGCCAGTAAATCATAACTTCCTTTTTTCTAATTTGATAATTCTTTATGTAGTAAATACGCAGTATATTTTCTTACAAGTGTTTCAAAGAATATATGATAACTGATGAAGCTAGAATAG       <  2:218520/141‑1
                                                                                                                                                aatTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTTTCAAAGAATATATGATAACTGATGAAGCTAGAATAGTCTGT  <  1:576655/138‑1
                                                                                                                                                                                                                                                                                             
CGTCTATGTATCCAGTAACACATTCTACTTAACTGATGGTACAGACTATTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2442668‑2442821
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTTTCAAAGAATATATGATAACTGATGAAGCTAGAATAGTCTGT  <  CP000730/2442838‑2442708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.