| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1217693 | 45 (0.920) | 3 (0.070) | 3/228 | NT | 7.1% | intergenic (+22/‑415) | USA300HOU_1144/USA300HOU_1145 | hypothetical protein/possible 3‑demethylubiquinone‑9 3‑methyltransferase |
| ? | CP000730 | = 1217729 | 39 (0.910) | intergenic (+58/‑379) | USA300HOU_1144/USA300HOU_1145 | hypothetical protein/possible 3‑demethylubiquinone‑9 3‑methyltransferase | |||||
CTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1217540‑1217693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctatagtgtttGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTTTT < CP000730/1217729‑1217590 CTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAA > 1:328820/1‑141 TATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAA > 2:480190/1‑141 tTAGTAGTCACGATGTCGACGAAAGTGCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGGAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCT < 1:226790/140‑1 TAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTA > 2:421749/1‑141 TAGTAGTCACGATGACGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATGACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTA > 1:316470/1‑141 gtaACGATGTCGAAGAAAGTTAAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAAAAAAAAAACAAAAAAGCTATAGTG < 2:122437/138‑1 AAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTGTAATATTTGGATGCGGTTATGCAGCAAATGATATTAAAC > 2:99421/1‑141 TAATGATGATTTATTTAAACATCTCCGGGGGATATTACGTAAACAAGAACATATTTAAAAACAAAAAAGCTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTA > 2:404815/1‑141 gtAAAACAAAAAAGCTATCGATTTTGGACTATTCGGATGCAGTTAAGCAGGCTCTGATATTAAACACTATAGTTTTTTTGTTTTTAAATTTGTACTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTA < 1:404815/139‑1 AAAAGCTATAGTCTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATA < 2:320908/141‑1 GCTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTG > 1:541362/1‑141 CTATAGTGTTTGTAATATTCGTATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTAAATGTTTAAATAAATCACCATTATGATCTATAGTTGT > 1:295858/1‑141 GTTTTTAATATTCTAATGCGGTTAACCAGCGCCTAATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGCTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTT < 1:99421/141‑1 TGTACTATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATCGTTGTTTTATTTTTT < 1:83292/141‑1 CTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1217540‑1217693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctatagtgtttGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTTTT < CP000730/1217729‑1217590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |