New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2476453	47 (0.960)	3 (0.070)	3/236	NT	6.3%	intergenic (‑198/+42)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
	?	CP000730	= 2476476	46 (1.040)					intergenic (‑221/+19)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR

ATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATA  >  CP000730/2476315‑2476591                                                                                                                                           |                                                                                                                                           attattTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAATGAAGGTGTTCAata                                                                                                                                          >  1:457397/1‑141 (MQ=255)    attTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTTTCTCATTTATAACTAAAAAGCAGGTGTTCAatacat                                                                                                                                       >  1:13429/1‑141 (MQ=255)    attTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAatacat                                                                                                                                       <  1:355131/141‑1 (MQ=255)            attattatgTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCCATTATAACTAAAAAGAAGGTGTTCAATACATACATAttt                                                                                                                               <  1:6948/141‑1 (MQ=255)                ttattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTc                                                                                                                           <  1:459382/141‑1 (MQ=255)                  attTTAGAAATTTTCTCGCGATAATACAATTCAATACATGATTAAATTTACTTTAGAATTGTACCTGATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCtt                                                                                                                         <  2:541017/141‑1 (MQ=255)                  attTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCtt                                                                                                                         <  1:273675/141‑1 (MQ=255)                         aaaTATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTGAGAATTGTACTTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttg                                                                                                                  >  2:456050‑M2/1‑138 (MQ=255)                               tatCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTTTAACTAAAAAGAAGGTGTTCAAatataagactaaatatgtatgtattgaacacc                                                                                                            <  1:381478‑M1/141‑33 (MQ=255)                                    cAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGATGTTCAATACATACATATTTAGTCTTATATTTGAACAACTTCaa                                                                                                       >  2:101839/1‑141 (MQ=255)                                      aGAATAAAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATCAAAGTACTCTATAAAAAAAAAAAAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaaaa                                                                                                     <  2:235545/141‑1 (MQ=255)                                           aCAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTa                                                                                                <  1:289079/141‑1 (MQ=255)                                            cAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAatataagactaaatatatatgtattgaacaccttcttttaagtta                                                                                               >  2:54991‑M1/1‑96 (MQ=255)                                            cAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAAAAGCTGTTCAATACATACATATTTAGTCTTATATttgaacaccttcttattagtta                                                                                               <  1:54991‑M2/141‑23 (MQ=255)                                             aaTTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAtt                                                                                              <  2:416158/141‑1 (MQ=255)                                                      aaTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGGACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATCTATAATTGc                                                                                     >  2:421350/1‑141 (MQ=255)                                                         taTTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtat                                                                                  <  2:202118/140‑1 (MQ=255)                                                            tAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATg                                                                               <  1:54817/141‑1 (MQ=255)                                                              actttactttAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGtt                                                                             >  2:235819/1‑141 (MQ=255)                                                              actttactttAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGtt                                                                             >  1:183971/1‑141 (MQ=255)                                                              actttacttgAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGtt                                                                             <  2:555718/141‑1 (MQ=255)                                                                  tactttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTAAAACTCAAAAGAGGGTGTTGAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTaa                                                                         <  1:304752/141‑1 (MQ=255)                                                                   actttaGAATTTTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                                                        <  1:98912/141‑1 (MQ=255)                                                                   actttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                                                        <  1:397602/141‑1 (MQ=255)                                                                   actttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                                                        >  1:196829/1‑141 (MQ=255)                                                                   actttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTCATCTTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                                                        <  1:161634/141‑1 (MQ=255)                                                                      ttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCg                                                                     <  2:416196/141‑1 (MQ=255)                                                                         gAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAACAACCTATTTATGATTGATATATGTTTTAATGCgatt                                                                  >  1:74829/1‑140 (MQ=255)                                                                         gAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatg                                                                  <  2:55844/141‑1 (MQ=255)                                                                          aaTTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatga                                                                 <  2:356956/141‑1 (MQ=255)                                                                              gTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                                             <  1:471143/141‑1 (MQ=255)                                                                               tACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAGTGcaaaggtttat                                                            >  2:88070/1‑131 (MQ=255)                                                                                      ttaCATTAGTTATTAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATCTGTCATATTTCGATGATTGATGACTTCt                                                     <  2:549956/141‑1 (MQ=255)                                                                                          atttttTATGAAAGTACTCTTTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATa                                                 <  2:23519/141‑1 (MQ=255)                                                                                                tatGAAATTACTCTATCAACTATAACTAAAAAGAAGGTGTGCAATACATACATATTTAGTCTTAAATTTGAACACCTTCAAAAACCTATTTATGATTGCGATATGTTTTACTGCGATGATTGATGACTTCTAATACTTGcc                                           <  2:450295/141‑1 (MQ=255)                                                                                                 atGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATCCAGACATATTTAGTCTTATATTTTAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTACTGCGATGATTGATGACTTCTAATACTTGCCt                                          <  2:457397/141‑1 (MQ=255)                                                                                                  tGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGCTGAGTTCTAATCCTTGCCtt                                         >  2:327530/1‑141 (MQ=255)                                                                                                   gAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTa                                        <  1:78035/141‑1 (MQ=255)                                                                                                        tACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAttt                                   <  2:183971/141‑1 (MQ=255)                                                                                                          ctctctCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTc                                 <  1:459818/141‑1 (MQ=255)                                                                                                             tctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCCATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACCTGTTCAat                              >  1:72516/1‑141 (MQ=255)                                                                                                             tctcAACTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAat                              <  2:391295/141‑1 (MQ=255)                                                                                                             tcccAATTATAACCAAAAAGAATGTGTTCAATACATACTTCTTTAGAATTATACTTGAACACGTTAAAAAACCTATTGATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAat                              <  2:204940/138‑1 (MQ=255)                                                                                                              ctcAATTATAACCAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAata                             <  1:15311/141‑1 (MQ=255)                                                                                                               tcAATTATAAGTAAAAAGAAGGTGTTTAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATTATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat                            <  2:256206/141‑1 (MQ=255)                                                                                                               tcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat                            >  1:421729/1‑141 (MQ=255)                                                                                                               tcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat                            >  2:399432/1‑141 (MQ=255)                                                                                                               tcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat                            >  1:143289/1‑141 (MQ=255)                                                                                                               tcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat                            >  2:539956/1‑141 (MQ=255)                                                                                                                     ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAg                      >  1:516153/1‑141 (MQ=255)                                                                                                                     ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAg                      >  1:87001/1‑141 (MQ=255)                                                                                                                     ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAg                      >  1:349331/1‑141 (MQ=255)                                                                                                                      taACTTAAAAGAAGGTGTTCAATACATATATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggtacaattctaaagtaaagttaatcatttcttgaattg                     >  2:54991‑M2/1‑45 (MQ=255)                                                                                                                      taACTAATAAGAAGGTGTTCAAatataagactaaatatgtatgtattgaacagcttttttttagttataattgagagagtactttcataaataatgtaataaggtacaattctaaagtaaagttaatcatttcttgaattg                     <  1:54991‑M1/141‑120 (MQ=255)                                                                                                                          tAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAAttt                 <  1:531939/141‑1 (MQ=255)                                                                                                                              aagaagGTTTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTAATTGTTCAATATCTTCAGAATTTAAAt             <  2:405177/141‑1 (MQ=255)                                                                                                                                   ggTGTTCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttaaaattgagagagtactttcataaataatgtaataaggtacaattctaaagtaaagttaatcatttcttgaattgtattcttgggata        <  1:381478‑M2/141‑110 (MQ=255)                                                                                                                                         cAAatataagactaaatatgtatgtattgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaagtacaattctcaagtaaagttaatcatttcttgaattgtattcttgggataatattt  >  2:456050‑M1/1‑3 (MQ=255)                                                                                                                                           |                                                                                                                                           ATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATA  >  CP000730/2476315‑2476591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.