| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 1,064,254 | Δ1 bp | 100% | coding (235/1218 nt) | USA300HOU_1000 ← | LytR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,064,253 | 0 | C | . | 95.0% | 343.2 / 7.8 | 78 | coding (236/1218 nt) | USA300HOU_1000 | LytR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base . (42/32); total (44/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGTAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTCCTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTGCTGTCTTGAGAAGATTCGA > CP000730/1064114‑1064385 | ggTAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTc > 1:236435/1‑140 (MQ=255)ggTAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTc > 2:661622/1‑140 (MQ=255) gTAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATGTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTct < 1:252191/140‑2 (MQ=255) tAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTctt < 1:370442/140‑3 (MQ=255) tAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTctt > 1:634880/1‑138 (MQ=255) aTCTTATCGTAATAGCCAACTTTATGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTCtttt < 1:422511/140‑1 (MQ=255) gTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTt‑tcttct < 2:610474/140‑1 (MQ=255) aTAGTCAACTTTAGGAATGTAGCTTATAGTATCACGTGGAATACTAAGCATTCTAATTTTATTTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTcc < 1:89759/140‑1 (MQ=255) aGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTGAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTAAGCATCCTGT‑CTTTTTT‑TTTTCTTCCAt > 2:720415/1‑140 (MQ=255) ccAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTATGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTTTTCCTTCg > 2:272310/1‑140 (MQ=255) cAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATAATAAGCCTTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTATAATCAAAGCGGCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGt < 1:440553/140‑1 (MQ=255) aaCTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGtt > 1:740977/1‑140 (MQ=255) aCTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAAAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTa > 2:686598/1‑140 (MQ=255) tttAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTCACTTAGAGTGTTCAGAATACTGT‑ATTTTTT‑TCTTCTTccgttcttttc > 1:476066/1‑131 (MQ=255) ttAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTatca < 2:598845/140‑1 (MQ=255) tAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTatcat > 1:83126/1‑140 (MQ=255) ggAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCg < 2:475525/140‑1 (MQ=255) ggAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTCTT‑TCTTCTTCCATCGTTATCATCg < 1:486027/140‑1 (MQ=255) ggAATGTAGCTGATAGTATCACGTGGAATACTAAGCATACTACTTTGATGTTTTGATTGATTAAAAGTAGTTAAAATAGTAGCGTATGATATCGAGAGTTAAGAATACTGT‑CTTTTTT‑TCTTGTTCCATCGTTATCATCg > 1:463503/1‑140 (MQ=255) gTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAACAGTAGTTAAAATAATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCTTCGTTATCTTCGATaac > 2:270181/1‑138 (MQ=255) gTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TTTTTTTTTATTGTTATCATCGATccc > 2:298208/1‑140 (MQ=255) gCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaa < 2:710473/140‑1 (MQ=255) tGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAGAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TATTCTTCCATCGTTATTAGAGATACCTaaga > 1:99060/1‑140 (MQ=255) gATAGTATCATGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaagaa < 1:564378/140‑1 (MQ=255) gATAGTATCAAGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaagaa < 1:356243/140‑1 (MQ=255) aTAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAAAGAGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaataaa > 1:5134/1‑140 (MQ=255) aGTATCACGTGGAATACTAAGCATGCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaagaaaag < 2:740162/140‑1 (MQ=255) tATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTaagaaaagaa > 1:443784/1‑140 (MQ=255) tCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATa > 2:708313/1‑140 (MQ=255) cGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATagag > 2:474484/1‑140 (MQ=255) gTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAgaga < 1:122907/140‑1 (MQ=255) ggAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATa > 1:106762/1‑140 (MQ=255) gAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTCTCATCGATACCTAAGAAAAGAATAGAGATAg > 2:702735/1‑140 (MQ=255) aTACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgt > 2:109223/1‑140 (MQ=255) aTACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgt > 2:292309/1‑140 (MQ=255) tACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGGGGGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgtt < 1:672066/140‑1 (MQ=255) tACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgtt < 1:572123/140‑1 (MQ=255) tACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgtt < 1:572113/140‑1 (MQ=255) tACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTATTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGgtt < 1:718083/140‑1 (MQ=255) cTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTCCTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTACGAACAGAATATAGATAGgttg > 2:686701/1‑140 (MQ=255) aaGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGttc > 1:508517/1‑140 (MQ=255) aaGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGAGTCAGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTAATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGttc > 1:632460/1‑140 (MQ=255) tCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTGTTCCATCGTTATCATCGATACCAAAGAAAAGAATAGAGATAGGTTGTTCTTCggg > 1:359946/1‑140 (MQ=255) tCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCggg > 1:22599/1‑140 (MQ=255) cTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGa < 2:296485/140‑1 (MQ=255) cTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAAAGATAGgtttttgcgcttaa > 2:530271/1‑132 (MQ=255) tttGATTCTTTAATTGATTAAAGGTATTGAAAATCATAGCGTCTGATCTAGAGTGTTAATTATCCT‑TTCTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGa < 1:203360/140‑1 (MQ=255) tttGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAAAAAAGAATAGAGATAGGTTGTTCTTCGGGATTgc > 2:194301/1‑139 (MQ=255) ttGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTCCAGCGTTCAGCATCCTGTCTTTTTTTAACCTAATACTTCG‑‑ACCAGCCATACCTTAGAAAAGAATAGAGATAGGTTGTTCGTCGGGATTGAc > 2:730790/1‑140 (MQ=255) ttGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTGCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGAc > 2:544389/1‑140 (MQ=255) tGATGTTTTGATTGTTTAAAAGTAGTTAATATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACt < 1:116513/140‑1 (MQ=255) tGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACt < 1:570671/140‑1 (MQ=255) aTGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACttt > 1:29772/1‑140 (MQ=255) tGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTtta < 1:204593/140‑1 (MQ=255) tttGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTttatta < 1:756893/140‑1 (MQ=255) tgattgatTAAAAGTAGTTAAAATCATAGCGGCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTAtc < 2:329459/140‑1 (MQ=255) ttAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAg < 2:490360/140‑1 (MQ=255) ctAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAg < 2:644522/139‑1 (MQ=255) agtagtTAAAATCAGAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAAAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGa > 1:397199/1‑140 (MQ=255) gtagtTAATATCATAGCGTCTGATCTAGAGTGTTCCTCATCCTGT‑TTTTTTT‑TTTTCTTCCATCGTTATCATGGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGAt < 1:236001/140‑1 (MQ=255) gtagtTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGAt < 1:696667/140‑1 (MQ=255) gtTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGa > 1:657638/1‑140 (MQ=255) ttAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGAc < 2:740977/140‑1 (MQ=255) aaaTCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TTTTTTTTTTTCGTTATCATCGATACCTAAGAAAAGAATAGTGATAGGTTGTTCTTCGGGATTGACTTTATTATCTATTAAGTTGGATAGACGAt > 2:76297/1‑140 (MQ=255) aaaTCATAGCGTCTGATCTAGAGTGTTCAGCATACTGT‑CTTTTTT‑TTTTCTTTATTTATTATCAACAGTGCATAAGCAAAGAATAGAAATGGTTATTTCTTTGGATTTGACTTTTTTATCGATTAAGTTTGATAGACTAt > 2:230013/1‑140 (MQ=255) aaaTCATACCGTCTGAACTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCGATCGTAATCATCTATACCTAAGAAAAGAATAATGATATGTTGTTGTTCTGGATTGACTTTATTATCTCTTCAGTTGGAttacagat > 2:214983/1‑134 (MQ=255) aaTCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGAtt < 1:474484/140‑1 (MQ=255) aaTCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGAtt > 1:604453/1‑140 (MQ=255) aTCATAGCGTCTGATCTAGATTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTa < 2:179090/140‑1 (MQ=255) tCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTG‑TCTTCTTCCATCGTTATCATCGATACCCAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTACGTTGGATTGACGATTAg > 1:519914/1‑140 (MQ=255) ccATAGCGTCTGATCTAGCGTGTTCAGCCTCCTGT‑GTTTTTT‑TCTTCTTCCAGCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAg < 2:135526/139‑1 (MQ=255) aTAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TTTTTTTTTATCGTTATAATCGGTGCCTAAGAAAAGAATAGAGATAGGTGGTTCTTCGGGGTTGACTTTCTTATCTCTTAAAAAGGATTGCCGAGTAGCa > 2:674194/1‑140 (MQ=255) tAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATTTTCGTTACTTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAt < 1:250173/140‑1 (MQ=255) tAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAt > 1:645444/1‑140 (MQ=255) tAGCGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAt > 1:447026/1‑140 (MQ=255) cGTCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAt‑ttt < 1:708313/140‑1 (MQ=255) tCTGATCTAGAGTGTTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTg < 1:429597/140‑1 (MQ=255) gtgtTCAGCATCCTGT‑CTTTTTT‑TTTTTTTTTTTTTTTATCATCGATACCTAAGAAAAGAATAGAGTTAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTTCTTTCTTtagt > 2:289047/1‑139 (MQ=255) gtTCAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTGCTGTCTTGagaag > 1:627132/1‑140 (MQ=255) cAGCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATAATCTCTTAAGTTGGATTGTCGCATA‑CATCTTTTTCTGTCTTgcacaaatt > 1:511116/1‑132 (MQ=255) gCATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTTAGCAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGTATTGTCGATTAGCAT‑TTTTGCTTTCTTGTGAATATTCg > 2:405094/1‑140 (MQ=255) cATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTGCTGTCTTGAGAAGATTCGa > 1:641098/1‑140 (MQ=255) cATCCTGT‑CTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTGCTGTCTTGAGAAGATTCGa > 1:539605/1‑140 (MQ=255) | GGTAATCTTATCGTAATAGCCAACTTTAGGAATGTAGCTGATAGTATCACGTGGAATACTAAGCATTCTAATTTGATGTTTTGATTGATTAAAAGTAGTTAAAATCATAGCGTCTGATCTAGAGTGTTCAGCATCCTGTCCTTTTTT‑TCTTCTTCCATCGTTATCATCGATACCTAAGAAAAGAATAGAGATAGGTTGTTCTTCGGGATTGACTTTATTATCTCTTAAGTTGGATTGACGATTAGCAT‑TTTTGCTGTCTTGAGAAGATTCGA > CP000730/1064114‑1064385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |