BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	92 (1.430)	50 (1.200) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	35/168	NT	49.4%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
*	?	CP000730	2176447 =	66 (1.020)	50 (1.200) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	35/168	NT	49.4%	noncoding (114/114 nt)	rrf5	5S ribosomal RNA

Only 100 of 147 total aligned reads displayed.

TACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACATT  >  CP000730/2176311‑2176585

tACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGcc                                                                                                                                         >  1:732958/1‑140 (MQ=255)

  cATTTCTCGTTTCGTCAGATTCATACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTg                                                                                                                                       <  2:271157/140‑1 (MQ=255)

   catattgtcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttctcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTgg                                                                                                                                      <  1:512057‑M2/7‑1 (MQ=255)

   aTTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCGTCTTTCTTTGTGTTTGCTTTTATTTTTATGTTTTAGACATAAAAAAAGGGGCGTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTgg                                                                                                                                      >  2:190459/1‑140 (MQ=14)

   aTTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATAGCATCCACTTTTTGTCTgg                                                                                                                                      >  2:115064/1‑140 (MQ=255)

    atattgtcattcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataaatttttttatcttgtcctttttattttttaaccaaaatttgattaaaaaacTGCCTAGc                                                                                                                                     >  2:401515‑M2/133‑140 (MQ=255)

     ttCTCGTTTCGTCAGATTTAAACGTTTTCCTTTCGCCATGCTTTCTTTTTTTGTGTTTGCTTTTATTTTGACTTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCa                                                                                                                                    <  1:206789/140‑1 (MQ=14)

      tctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAGGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTGTCAATGCGGCTCATCGCACCCACTTTTTGCCTGGCaa                                                                                                                                   >  1:236826/1‑140 (MQ=255)

      tctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAACCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAAAGCGGCTCATCGTCTCCACTTTTTACCTGGcca                                                                                                                                   >  1:215071/1‑138 (MQ=14)

       gtcGTTTCGTCAGATTCAAACGTTTCCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTCCCTGGCAAc                                                                                                                                  <  1:558458/139‑1 (MQ=255)

       ctgttttCGTCAGATTAAAACGTTTTCACTTCGCCACGCCATCTTTGTTTGTGTTTGCTTTTATATTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                  <  1:598692/136‑1 (MQ=14)

       ctcGTTTCTTCATATTCAAACGTTTTCACTTCGCCAATCCATCTTTCTTTTTGTTTGCTTTGATTGTGACGTTTTAGACAGAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCAGCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                  <  1:530876/140‑1 (MQ=14)

       ctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                  >  2:27769/1‑140 (MQ=40)

       ctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                  >  2:337991/1‑140 (MQ=39)

       ctcGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAc                                                                                                                                  >  2:666174/1‑140 (MQ=40)

         cGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGt                                                                                                                                >  1:201195/1‑140 (MQ=40)

          gTTTAGTCAGATTCGAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCCTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGtt                                                                                                                               >  2:462679/1‑140 (MQ=255)

             ttcagtttacaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaataaaaacttgatgaaaaaactgcctgtcatatctcta                                                                                                                            >  2:89175‑M2/124‑132 (MQ=255)

             tCGTCAGATTCAAACGTTTTCACTGCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATAGCATCAACTATTTGCCTGACAACGTTCTa                                                                                                                            >  2:615389/1‑140 (MQ=14)

              tcagttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTAc                                                                                                                           <  2:742014‑M2/18‑1 (MQ=255)

              cttCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTAc                                                                                                                           <  1:445333/138‑1 (MQ=39)

              cGTCAGATTCAAACGTTTTCACTTCGCCAAGTCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTAc                                                                                                                           <  1:101459/140‑1 (MQ=255)

               gTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAAAGTTCTaat                                                                                                                          >  2:329958/1‑138 (MQ=255)

                gagtttcgagtttcgtttttcttaccgagaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTActc                                                                                                                         <  2:330990‑M2/20‑1 (MQ=255)

                 gttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttatttttgaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTActct                                                                                                                        <  1:717118‑M2/21‑1 (MQ=255)

                  ttttcaatgttcatttttcttaccgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTa                                                                                                                       >  1:541856‑M2/119‑140 (MQ=255)

                     ttCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCg                                                                                                                    <  1:496658/140‑1 (MQ=39)

                          aCGTTTTCCCTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGAAATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                               <  2:142763/140‑1 (MQ=255)

                           ttcatttttcttaccgacacgaattaattatacattttatcaacatttaagtcaataactttttttatcttgtcaattttattttttaaccaaaatttgattaaaaaacTGCCTGTCAACGTTCTACTCTAGCGGAACGt                                                                                                              >  1:376355‑M2/110‑140 (MQ=255)

                             ttttCACTTCGCCAAGACATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATGAAAAAAAAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTaa                                                                                                            >  1:377644/1‑140 (MQ=255)

                              tttCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAg                                                                                                           <  2:358739/140‑1 (MQ=40)

                               ttCACTTCGCCAAGCCATTTTTCTTTTTTTTTGCTTTTATTTTGACTTTTTAGACATAAAAAAAGAAACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGTCAACGTTCTACTCTAGCGGAACGTAAGt                                                                                                          <  1:83499/140‑1 (MQ=11)

                                 cACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTAAATACGACTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAATTTc                                                                                                        >  1:63518/1‑140 (MQ=255)

                                    cttaccgacaagaattaattatacattttctcaacctttaagtcaataactttttttatcttatccattttattttttaaccaaaatttgattaaaaaacTGCCAGGAAACGTTCTACTCTAGCGGAACGTAAATTCGAc                                                                                                     >  1:366321‑M2/101‑140 (MQ=255)

                                     ctaccgaaaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACt                                                                                                    <  2:181882‑M2/41‑1 (MQ=255)

                                       gCCAAGCCATCTTTTTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                                  <  1:442522/140‑1 (MQ=255)

                                       gCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGACCGTAAGTTCGACTAc                                                                                                  <  1:565844/140‑1 (MQ=255)

                                       accgacaagaattaattataccttttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                                  <  2:58097‑M2/43‑1 (MQ=255)

                                       accgacaagaattaattatacattttatcaacatttaagtcaatcactttttttatcttgtccattttattttttttctttattttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGGACGTAAGTTCGACTAc                                                                                                  >  2:404359‑M2/98‑140 (MQ=255)

                                       accgacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                                  <  2:258410‑M2/43‑1 (MQ=255)

                                        cctacaagaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                                 <  2:705202‑M2/44‑1 (MQ=255)

                                              agaattaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                           >  1:659335‑M2/91‑140 (MQ=255)

                                               aTCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATAGAATACACGGTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                          <  1:329958/140‑1 (MQ=14)

                                                  ttaattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                       >  1:701107‑M2/87‑140 (MQ=255)

                                                    aattatacattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTACCTAGCAACGTTCTACTCTAGCGGAACGTAAGTTCTACTACCATCGACGCTAAg                                                                                     >  1:353852‑M2/85‑140 (MQ=255)

                                                      ctgtcgtTTGCTTTTAGTTTGACGTCTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCACCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGa                                                                                   <  2:563324/135‑1 (MQ=11)

                                                          acattttatcaacatttaagttaataactttttttaacttgtccatttgattttttcaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCtt                                                                               <  1:60693‑M2/62‑1 (MQ=255)

                                                          acattttatcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCtt                                                                               <  1:41850‑M2/62‑1 (MQ=255)

                                                               gCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                          <  1:122695/140‑1 (MQ=34)

                                                                cTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGCACGGAAGTTCGACTACCATCGACGCTAAGGAGCATAACTTc                                                                         <  1:481672/140‑1 (MQ=16)

                                                                  tttATTTTGATGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTcgg                                                                       >  2:514220/1‑138 (MQ=18)

                                                                  tttATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGGCTCAAGACAGCAAATCGCATCCACTTTTTGCCTGGCAACGTTCCACTCAAGAGGAACGTAAGTTCGACTACCATCGACGCACAGGAACTAAACTTCtg                                                                       >  2:610564/1‑140 (MQ=11)

                                                                  tttATTTTGACGTTTTAAACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTACCTGGCAACGTTCTACCCTAGCGGAACGGAAGTTCCACCACCACCGACGCCCAGGAGCTTAAccgccg                                                                       >  2:14696/1‑135 (MQ=11)

                                                                  tcaacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGAAGCTTAACTTCtg                                                                       >  1:529524‑M2/71‑140 (MQ=255)

                                                                   caacatttaagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCggt                                                                      >  2:233527‑M2/70‑140 (MQ=255)

                                                                     tttttGACGTTTTAGACATAAAAAAAGAGACCTTCCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                                    <  1:345465/139‑1 (MQ=17)

                                                                     aTTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                                    >  1:11412/1‑140 (MQ=32)

                                                                         ttaggtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                                <  2:80139‑M2/77‑1 (MQ=255)

                                                                          taagtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                               >  2:74478‑M2/63‑140 (MQ=255)

                                                                           aCGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCa                                                              >  1:301827/1‑140 (MQ=32)

                                                                             gtcaattactttttttatcttgttcattttattttttaaccacaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                            <  1:297272‑M2/81‑1 (MQ=255)

                                                                             gtcaataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                            <  1:168250‑M2/81‑1 (MQ=255)

                                                                               taatcactttttttatcttgtccattttattttttagtcaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                          <  1:78489‑M2/83‑1 (MQ=255)

                                                                                aataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACTTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                         >  1:362494‑M2/57‑140 (MQ=255)

                                                                                 ataactttttttatcttgtccattttattttttaaccagaattttattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                        >  2:695306‑M2/56‑140 (MQ=255)

                                                                                 ataactttttttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTGGGCATGGGaa                                                        >  1:264132‑M2/56‑140 (MQ=255)

                                                                                  taactttttttatcttgtccattttattttttcaacaacattcgattaataaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAAc                                                       <  1:515337‑M2/86‑1 (MQ=255)

                                                                                     cttatttcatcttctccatttaatttttaaaccaaaatctgattaaaaaacTGCCTGGCAAGGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                    <  1:645294‑M2/89‑1 (MQ=255)

                                                                                      tatttttatctcgtccattttattgtttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCTGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgt                                                   <  2:469996‑M2/90‑1 (MQ=255)

                                                                                      aTAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgt                                                   <  1:27769/140‑1 (MQ=33)

                                                                                      aTAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgt                                                   <  1:666174/140‑1 (MQ=34)

                                                                                          tttatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAACGGAACGTAAGTTCGACTACCAACGACCCTAAAGAGCTTAACTTCTGTGTTCGGCATGGGAacaggtttta                                               >  1:479832‑M2/47‑136 (MQ=255)

                                                                                          aaaaaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                               <  2:390146/140‑1 (MQ=32)

                                                                                           ttatcgtgtccattttatttcttaaccaaaatttgattaaaaaccTGCCTGGCAACGTTCTACTCGAGCGGACCGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                              <  2:714504‑M2/95‑1 (MQ=255)

                                                                                           aaaaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                              <  2:732958/140‑1 (MQ=32)

                                                                                            tatcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGTAACAGGTGTGAcc                                             <  1:78256‑M2/96‑1 (MQ=255)

                                                                                            aaaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTTTTTTTTTTTTTTCTACTCTAGCGGAACGTAAGTTCGACTATCATCGACGGTATGGAGCTTAACTTCTGTGTTCGGCATGGGaaaaaatatgacc                                             >  2:302493/1‑129 (MQ=11)

                                                                                             aaGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTAGGCATGGGAACAGGTGTGAcac                                            >  2:20569/1‑138 (MQ=17)

                                                                                              tcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctc                                           >  1:753826‑M2/43‑140 (MQ=255)

                                                                                              tcttgtccattttattttttaaccaaaatttgattaaaaaacTGCCTAGAAACGTTCTACGCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAGGAAGGTTAACTTCTATGTTCGGCCTGTGAACAGGTTtgacata                                           >  2:701625‑M2/43‑137 (MQ=255)

                                                                                                   ttcattttattttgtaaccataatgtgattaaaaagcTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                      <  1:156600‑M2/103‑1 (MQ=255)

                                                                                                   tccattttattttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAGGTGTGACCTCCTTGc                                      <  1:418590‑M2/103‑1 (MQ=255)

                                                                                                   ccTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                      >  1:544252/1‑140 (MQ=33)

                                                                                                    tttccGGTCTCCATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                     <  2:391402/136‑1 (MQ=12)

                                                                                                     ttGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                    <  1:259867/140‑1 (MQ=32)

                                                                                                        tttattttttaatcaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                                 <  1:660138‑M2/108‑1 (MQ=255)

                                                                                                           tctcAATGCGGCTCGTCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCa                              <  1:132891/140‑1 (MQ=17)

                                                                                                           tctcAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGGGTGACCTCCTTGCTATAGTCa                              >  2:520255/1‑140 (MQ=17)

                                                                                                           tctcAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGAGTGACCTCCTTGCTATAGTCa                              >  2:229133/1‑140 (MQ=18)

                                                                                                           attttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCa                              >  2:363948‑M2/30‑140 (MQ=255)

                                                                                                           attttttaaccaaaatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGATGTGACCTCCTTGCTATGGTCa                              >  2:549899‑M2/30‑140 (MQ=255)

                                                                                                              ttttaaccaatatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCa                           <  1:128272‑M2/114‑1 (MQ=255)

                                                                                                              cAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCa                           <  2:737468/140‑1 (MQ=33)

                                                                                                                      cTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAGCAGGGGGGACCTCCTTCCTATAGTCACCCGCCCTATg                   >  2:167836/1‑140 (MQ=11)

                                                                                                                        aatttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGaa                 >  2:32035‑M2/17‑140 (MQ=255)

                                                                                                                         atttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt                <  2:264132‑M2/125‑1 (MQ=255)

                                                                                                                           ttgattaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGt              <  2:664002‑M2/127‑1 (MQ=255)

                                                                                                                              aagaaaaaacTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACCACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGtaat           <  2:565329‑M2/130‑2 (MQ=255)

                                                                                                                                     ttttGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCCTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACa    <  2:550601/140‑1 (MQ=18)

                                                                                                                                       ttGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGTCGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACAtt  <  1:194546/140‑1 (MQ=18)

TACATTTCTCGTTTCGTCAGATTCAAACGTTTTCACTTCGCCAAGCCATCTTTCTTTGTGTTTGCTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTTGCGGTCTCAATGCGGCTCATCGCATCCACTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACATT  >  CP000730/2176311‑2176585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.