Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 607,884 G→A 100% R209* (CGA→TGA)  USA300HOU_0550 ← deoxynucleoside kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730607,8840GA100.0% 268.8 / ‑6.5 87R209* (CGA→TGA) USA300HOU_0550deoxynucleoside kinase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  major base A (52/33);  minor base C (1/0);  total (53/34)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCGAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCAG  >  CP000730/607751‑608020
                                                                                                                                     |                                                                                                                                        
tgtgAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGAATCTACTTGTCGATATGTTTGAATAATTCAAGCaaa                                                                                                                                    >  2:550411/1‑139 (MQ=255)
 gtgAATTATTGTATTCGATTGAATTGATAATATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAAtt                                                                                                                                   <  1:277815/140‑1 (MQ=255)
 gtgAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAAtt                                                                                                                                   <  1:455680/140‑1 (MQ=255)
        aaTGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTa                                                                                                                            <  2:660238/140‑1 (MQ=255)
        aaTGTATTCGATAGAACTGATAAAACAATCGATAATAGCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTTGATATGTTTGAATAATTCAAGCAATTTTGTTTa                                                                                                                            <  2:593992/140‑1 (MQ=255)
          tGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATc                                                                                                                          >  1:370369/1‑140 (MQ=255)
            taatCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCAt                                                                                                                        <  2:523482/137‑1 (MQ=255)
            tATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTATACTTTTATAATGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTtattat                                                                                                                        >  1:20544/1‑140 (MQ=255)
            tATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCAt                                                                                                                        <  2:523710/140‑1 (MQ=255)
             aTTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACTTATATGCTAAGTCGTAAGACTTTTAACGAGTATCGACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATa                                                                                                                       >  1:720809/1‑140 (MQ=255)
             aTTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTCGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATGCATGCAATTTTGATTATCATa                                                                                                                       >  2:434498/1‑140 (MQ=255)
             aTTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTTAAGCAATTTTGTTTATCATa                                                                                                                       >  2:669583/1‑140 (MQ=255)
             aTTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTATTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATa                                                                                                                       >  1:29896/1‑140 (MQ=255)
              ttCGATAGAATTGAAAAAATAATCGAAAATATCTATGGAATATACATTTAATATAAACATATACGCTATGTCTTTAGTCTTTTATCTTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAg                                                                                                                      <  2:179015/140‑1 (MQ=255)
                  aTAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACTTTTTAGCCAAGACCTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGAtt                                                                                                                  <  1:175317/140‑1 (MQ=255)
                     gAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTaa                                                                                                               <  1:603002/140‑1 (MQ=255)
                     gAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTaa                                                                                                               <  1:702807/140‑1 (MQ=255)
                     acaTTGATAAAATAATCGATAATTGCAATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTaa                                                                                                               <  2:743458/138‑1 (MQ=255)
                       aTTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTTTATCTACTTGTCGATATATTTGAATAATTCAAGCAATTTTGTTAATCAAAGGACTTAAAg                                                                                                             >  1:285008/1‑140 (MQ=255)
                       aTTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAg                                                                                                             >  2:699305/1‑140 (MQ=255)
                       aTTGATAAAATAATCGATAAGATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAg                                                                                                             >  1:460834/1‑140 (MQ=255)
                                 taatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGACTAATTCAAGCAGAGTAGTTTATCATAGGATTTAAAGATTCGGGGTc                                                                                                   >  2:156965/1‑140 (MQ=255)
                                 taatCGATATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTcc                                                                                                  <  1:577647/140‑1 (MQ=255)
                                  aatCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTCTCTCTTTATTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTcc                                                                                                  <  1:550354/140‑1 (MQ=255)
                                    tCGATAATATCAATGTAATATACATTGAATATAAACATATTCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCtt                                                                                                <  1:96627/140‑1 (MQ=255)
                                    tCGACAATATCTATGGATTATACATTGAATATAACCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCtt                                                                                                <  2:117809/140‑1 (MQ=255)
                                     cGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTa                                                                                               >  1:338548/1‑140 (MQ=255)
                                      gATAATATCTATGGAAAATACATTGAATATTAACATATAAGCTATGTCTTTAGTCTTTTATCGTGTATATATTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATTATAGGATTTAAAGGTTCGGGGTCCTTAt                                                                                              >  2:247309/1‑140 (MQ=255)
                                       ataataTCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCCAGCAATTTTGTTTATCATAGGATTTAAAGTTTCAGGGTCCttgtt                                                                                             >  2:48723/1‑137 (MQ=255)
                                       ataataTCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATg                                                                                             >  2:268639/1‑140 (MQ=255)
                                         aataTCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACATGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCAGGGTCCTTATGGa                                                                                           >  1:215837/1‑140 (MQ=255)
                                          atatCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGat                                                                                          <  2:562974/140‑1 (MQ=255)
                                            atCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGatat                                                                                        <  2:327319/140‑1 (MQ=255)
                                               tagggAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTATTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCat                                                                                     <  1:23685/137‑1 (MQ=255)
                                                       ataCATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTa                                                                             <  2:311333/140‑1 (MQ=255)
                                                       ataCATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTa                                                                             >  1:631432/1‑140 (MQ=255)
                                                       ataCATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTa                                                                             >  2:703072/1‑140 (MQ=255)
                                                       ataCATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGAGGTCCTTATGGATATCATATTCAtaa                                                                             >  1:245287/1‑138 (MQ=255)
                                                         aCATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTTTGGTTATCATATTCATTAat                                                                           >  1:119281/1‑140 (MQ=255)
                                                          cATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAata                                                                          <  2:71571/140‑1 (MQ=255)
                                                           aatGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAatat                                                                         >  2:466779/3‑140 (MQ=255)
                                                           aTTGAATATAAACATATACGCTATGTCTTTAGTTTTTTATCGTGTATCTACTTGTAGATCTGTTTGAATAATTCAAGCACTTTTGTCTATCATAGGTTTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAatat                                                                         >  2:82566/1‑140 (MQ=255)
                                                               aaTATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGAt                                                                     <  2:682506/140‑1 (MQ=255)
                                                               aaTATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGAt                                                                     <  2:64135/140‑1 (MQ=255)
                                                               aaTATAAACATATACGCTATGTCTTCAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATCTCATATTCATTAATATTGAt                                                                     <  1:464445/140‑1 (MQ=255)
                                                                atatAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGTGTCCTTATGAATATCATATTCATTAATATTGATa                                                                    >  1:188459/1‑140 (MQ=255)
                                                                     aaCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTAc                                                               >  1:71920/1‑140 (MQ=255)
                                                                     aaCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTGGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTAc                                                               >  1:506242/1‑140 (MQ=255)
                                                                     aaCATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGAAATGGTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTAc                                                               >  1:145757/1‑140 (MQ=255)
                                                                     aaCATATACGCGATGTCTTTAGTCGTTTATCGGGTATCTACTAGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGAGTTAAAGATGCGGGGTCCTTATGGATATCATATTCATGAATATTGATACGTAc                                                               >  2:728934/1‑140 (MQ=255)
                                                                      aCATATAAGCTATGTCTTTAGTCTTTTATCGTGTAACTATTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACa                                                              <  1:483741/140‑1 (MQ=255)
                                                                       cATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACaa                                                             >  1:602167/1‑140 (MQ=255)
                                                                           taCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTgg                                                         >  2:72182/1‑140 (MQ=255)
                                                                            aCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCTATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGa                                                        <  1:45712/140‑1 (MQ=255)
                                                                            aCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTgaa                                                        >  1:99146/1‑138 (MQ=255)
                                                                            aCGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGa                                                        >  1:164625/1‑140 (MQ=255)
                                                                             cGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGAc                                                       >  1:599663/1‑140 (MQ=255)
                                                                                 ttGTTTTTAGTCTTTTAGCGTGTAGCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGc                                                   <  2:76646/139‑1 (MQ=255)
                                                                                 aTGTATTTGGTCTTTTATCGTGTATCTACTTGTCTATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGAGTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAAATGGACATGc                                                   <  2:241464/140‑1 (MQ=255)
                                                                                   gTCTTTAGTCTTTTATCGTGTATATACTTGTCGATCAGTTTGAATAATTCAAGCAAGTTTGTTTTTCATAGGCTTTAAAGATTCAGGGTCCTTATGGATAATATATGCATTAATATTGATACGTCCAACTGGCCATggct                                                 >  2:657391/1‑137 (MQ=255)
                                                                                   gTCTTTAGTCTTTTATCGTGAATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCAt                                                 >  1:534185/1‑140 (MQ=255)
                                                                                    tCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCAAATTCATTAATATTGATACGTACAACTGGACATGCAtt                                                >  2:78347/1‑140 (MQ=255)
                                                                                    gcTTTGGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCAtt                                                >  2:181827/2‑140 (MQ=255)
                                                                                     cTTTAGACCTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTa                                               >  2:658318/1‑140 (MQ=255)
                                                                                      tttAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCCTTaa                                              <  2:460834/140‑1 (MQ=255)
                                                                                       ttAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACCAGCATTaaa                                             >  1:184081/1‑140 (MQ=255)
                                                                                         aGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTATAGc                                           >  1:313948/1‑140 (MQ=255)
                                                                                             ttttATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTAtt                                       >  2:531918/1‑140 (MQ=255)
                                                                                                tATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAAt                                    >  2:337785/1‑140 (MQ=255)
                                                                                                tATCGTGTATCTACTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGATATTAAt                                    >  1:490477/1‑140 (MQ=255)
                                                                                                           tACTTGTCGATATGTTTGAATAATTCAAGAAATGTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCAt                         >  1:366711/1‑140 (MQ=255)
                                                                                                            aCTTGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATa                        >  1:266936/1‑140 (MQ=255)
                                                                                                            aCTTGTCGATATGTTTCAATATTTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATa                        >  1:390606/1‑140 (MQ=255)
                                                                                                              gggTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGc                      >  2:239015/3‑140 (MQ=255)
                                                                                                               tGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATacag                     >  2:396580/1‑137 (MQ=255)
                                                                                                               tGTCGATATGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCg                     <  1:571255/140‑1 (MQ=255)
                                                                                                                 tgggtatGTTTGAATAATTCGAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGtt                   <  2:250484/136‑1 (MQ=255)
                                                                                                                    atatGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTaa                <  2:740811/140‑1 (MQ=255)
                                                                                                                      atttttGAACAATTCAAGCAATTTTGTTTATCAGAGCATTTAAAGATTCGGTGTCCTTATGGATATCATATTCATTAATATTAATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAAt              <  1:48723/137‑1 (MQ=255)
                                                                                                                      atGTTTGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAAt              <  1:268639/140‑1 (MQ=255)
                                                                                                                          ttGAATAATTCAAGTAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCt          <  1:244527/140‑1 (MQ=255)
                                                                                                                           tGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCtt         >  2:80854/1‑140 (MQ=255)
                                                                                                                           tGAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCtt         >  1:58769/1‑140 (MQ=255)
                                                                                                                            gAATAATTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTACGACAATCGTCATAGCGTTTCAATAGCttt        >  2:342983/1‑140 (MQ=255)
                                                                                                                             aataatTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCtttt       >  2:652195/1‑140 (MQ=255)
                                                                                                                                 atTCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCa   >  1:386511/1‑140 (MQ=255)
                                                                                                                                  ttCAAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCAATTAATCCAATCGTCATACCGTTTAAATAGCTTTTTCCAg  >  1:496694/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                        
TGTGAATTAATGTATTCGATAGAATTGATAAAATAATCGATAATATCTATGGAATATACATTGAATATAAACATATACGCTATGTCTTTAGTCTTTTATCGTGTATCTACTTGTCGATATGTTTGAATAATTCGAGCAATTTTGTTTATCATAGGATTTAAAGATTCGGGGTCCTTATGGATATCATATTCATTAATATTGATACGTACAACTGGACATGCATTAAAGCTATTAATCCAATCGTCATAGCGTTTAAATAGCTTTTTCCAG  >  CP000730/607751‑608020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: