BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	64 (0.920)	31 (0.500)	24/232	NT	36.5%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
*	?	CP000730	= 2128343	51 (0.820)	31 (0.500)	24/232	NT	36.5%	intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

Only 100 of 104 total aligned reads displayed.

ACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128206‑2128483

aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:660756‑M2/141‑4 (MQ=255)

aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTATAtgt                                                                                                                                           <  1:379703‑M2/141‑4 (MQ=255)

aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGAACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:665030‑M2/141‑4 (MQ=255)

  aTCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtat                                                                                                                                         <  2:416526‑M2/141‑6 (MQ=255)

   tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  1:360027‑M2/141‑7 (MQ=255)

   atcgtGTAATCTCAATTGTTAAAAGAAAAAATTAAAGAAGAAGAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        >  2:633861‑M2/3‑135 (MQ=255)

      gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     >  1:2947‑M2/1‑132 (MQ=255)

       tgtATTTTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    >  2:717586‑M2/1‑131 (MQ=255)

       tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  1:290006‑M2/141‑11 (MQ=255)

       ctcactctcatttgTTAGAAGAAAAATTTAAAGATAAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCAGTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    >  1:179511‑M2/6‑131 (MQ=255)

        gtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   >  1:13354‑M2/1‑130 (MQ=255)

          aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCCAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 <  1:96081‑M2/141‑14 (MQ=255)

          aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 <  1:133524‑M2/141‑14 (MQ=255)

          aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 <  1:808509‑M2/141‑14 (MQ=255)

           ttCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGAACACATTAGGGACCCCAAAACCAATAAATACTGTTGTTACAAGGTTTATAtgtatccaaaatgg                                                                                                                                <  2:585387‑M2/141‑15 (MQ=255)

              tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggggg                                                                                                                             <  2:750401/141‑1 (MQ=255)

                    gTCAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactttta                                                                                                                       >  1:503480‑M2/1‑118 (MQ=255)

                       agaagaAAAATTTAATGAAGAGGACAAAAAAACCACGAAGATGCCACAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaaca                                                                                                                    >  1:623577‑M2/1‑115 (MQ=255)

                       agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTCtgtatccaaactggagacttttaaca                                                                                                                    >  1:595781‑M2/1‑115 (MQ=255)

                           gaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaa                                                                                                                <  1:725339‑M2/141‑31 (MQ=255)

                                aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAt                                                                                                           <  2:442085/141‑1 (MQ=255)

                                 tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattact                                                                                                          <  2:6477‑M2/141‑37 (MQ=255)

                                 tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAtt                                                                                                          >  1:428785/1‑141 (MQ=255)

                                 tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGAAATTTAGGGACCCATTAGTGACTCCAAACCCAATAAATTCAGAATCCACATGTTCGATATGCATCCCAACTATGTGAAATATAAACGCCCTGAtt                                                                                                          >  1:382750/1‑141 (MQ=255)

                                    aaTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGCATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttat                                                                                                       <  2:763919‑M2/141‑40 (MQ=255)

                                        aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcatt                                                                                                   >  1:155429‑M2/1‑98 (MQ=255)

                                        aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   >  2:480389/1‑141 (MQ=255)

                                        aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   >  1:303926/1‑141 (MQ=255)

                                        aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGCGACCCATTATGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  2:687464/141‑1 (MQ=255)

                                          gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 <  2:692795/141‑1 (MQ=255)

                                           gggACAAAAAAACAACTTATCTTCAAGAAGGTGTGCAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACa                                                                                                <  1:318790/140‑1 (MQ=255)

                                           agaaCAAAAAAACAACTAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACa                                                                                                <  1:656115/138‑1 (MQ=255)

                                           agGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACa                                                                                                <  2:460706/141‑1 (MQ=255)

                                           agGAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACa                                                                                                <  1:674659/141‑1 (MQ=255)

                                               cAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGCCAAtct                                                                                            >  1:176904/1‑141 (MQ=255)

                                               cAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtct                                                                                            >  2:266655/1‑141 (MQ=255)

                                                aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagagttttaacataaaattacttatatttcaaaaagt                                                                                           <  2:452803‑M2/141‑52 (MQ=255)

                                                 aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagta                                                                                          >  2:230445‑M2/1‑89 (MQ=255)

                                                        aacTAAAGTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagc                                                                                   >  2:290006‑M2/1‑82 (MQ=255)

                                                         acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  >  2:315672/1‑141 (MQ=255)

                                                         acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  >  2:315907/1‑141 (MQ=255)

                                                         acTAAAATTTTAGAAAGTATCTAATTTAGGGACCCATTAGGGACTCCAAACCTAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGCTTTAATCGGACAATCTTCTTATATTa                                                                                  >  1:493332/1‑141 (MQ=255)

                                                              aaTTTTAGAAAGTATGTAATGTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaat                                                                             <  1:93359/141‑1 (MQ=255)

                                                                  ttAGAAAGTATGTCTTTTGTGGACCCATTAGGGACTCCACACCCACTAAATACTGTTGTTACAATGTTTCTATGTACCCCAATTGGGGGCAATATAATCGCGCTGATTTAACCGGACAATCTTTTTAGACTACAAATAatg                                                                         <  2:327581/141‑1 (MQ=255)

                                                                  ttAGAAAGTATGTAATTTCGGGGCGCATTAGGGTCTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatg                                                                         <  2:626885/141‑1 (MQ=255)

                                                                  ttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCATACTTGGGTCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatg                                                                         <  1:552156/141‑1 (MQ=255)

                                                                  ttAGAAAGTATGGAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAACCTATATACAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatg                                                                         <  1:552111/141‑1 (MQ=255)

                                                                     gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggt                                                                      >  2:21020‑M2/1‑69 (MQ=255)

                                                                     gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggt                                                                      >  2:361961‑M2/1‑69 (MQ=255)

                                                                         gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCga                                                                  >  1:282351/1‑140 (MQ=255)

                                                                         gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                  >  1:282493/1‑141 (MQ=255)

                                                                         gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                  >  1:123613/1‑141 (MQ=255)

                                                                           aggTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTTTTACAAGTGTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTaa                                                                <  1:550913/139‑1 (MQ=255)

                                                                                      ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcatta                                                     <  2:92134‑M2/141‑90 (MQ=255)

                                                                                      ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:730565/1‑141 (MQ=255)

                                                                                       gACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAg                                                    >  1:100202/1‑141 (MQ=255)

                                                                                        ccccctTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatc                                                   >  1:418900‑M2/2‑50 (MQ=255)

                                                                                        aCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatc                                                   >  1:658537‑M2/1‑50 (MQ=255)

                                                                                        aCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcatgcaaaaagtaaaacagcataatatcaaggtttataactttatcattatc                                                   >  1:400142‑M2/1‑50 (MQ=255)

                                                                                         cccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCa                                                  <  1:315672/141‑1 (MQ=255)

                                                                                         cccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCa                                                  <  1:315907/141‑1 (MQ=255)

                                                                                         cccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGATTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcagtatca                                                  <  2:327737‑M2/141‑93 (MQ=255)

                                                                                           cATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAtt                                                <  2:428785/141‑1 (MQ=255)

                                                                                           aaTTAGCGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAtt                                                <  2:382750/140‑1 (MQ=255)

                                                                                            aTTAGGGACTTGAAATCCAATNANTACNGTTGTTACAAGGTTTCTGTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAttt                                               <  1:438211/141‑1 (MQ=255)

                                                                                             ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataa                                              <  1:711593‑M2/141‑97 (MQ=255)

                                                                                              tATGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataat                                             >  2:85830‑M2/1‑44 (MQ=255)

                                                                                              tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggaggcttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttctaactttatcattatcaataat                                             <  1:70206‑M2/141‑98 (MQ=255)

                                                                                              tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACTATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAAAATTTGa                                             >  1:204177/1‑141 (MQ=255)

                                                                                              tAGGCACTCCAAACCCAATAAATACTGTTGTTACAATGTTACTAtgtatccaaactggagacttttaacataaaattacttatcattcataaagtaaaacagcataatatcaaggtttataactttatcattatcaataat                                             >  1:500771‑M2/1‑44 (MQ=255)

                                                                                               aGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataata                                            >  1:6477‑M2/1‑43 (MQ=255)

                                                                                                 ggccTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATaa                                          <  2:785316/138‑1 (MQ=255)

                                                                                                       cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGc                                    >  2:646301/1‑141 (MQ=255)

                                                                                                       cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGAGAATGGTGc                                    >  2:788483/1‑141 (MQ=255)

                                                                                                       cAAACCCAATAAATACTGGTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatat                                    >  1:537630‑M2/1‑35 (MQ=255)

                                                                                                         accccAATAAATCCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  <  1:423473/139‑1 (MQ=255)

                                                                                                          aCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaa                                 <  1:529037‑M2/141‑110 (MQ=255)

                                                                                                          aCCCAATAAATACTATTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaa                                 <  1:529239‑M2/141‑110 (MQ=255)

                                                                                                           cccAACAAACACTGTTGTTACAAGGTTTCTATTTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                                <  1:35762/141‑1 (MQ=255)

                                                                                                            ccAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATACTGGTTCATCAg                               <  2:698306/141‑1 (MQ=255)

                                                                                                            ccAAGAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAg                               <  2:159532/141‑1 (MQ=255)

                                                                                                             cAATAAATTCTTTCGTTACAAGGTTTCTATGTATCCAAACTGGGGTAAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGa                              <  1:621670/141‑1 (MQ=255)

                                                                                                                taaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaa                           >  1:245060/1‑141 (MQ=255)

                                                                                                                taaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATAATGTTGTAATATTCAATGAAGCATTTGATGATGGGGCATAAGACaa                           >  1:150123/1‑141 (MQ=255)

                                                                                                                     aCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttagaactttatcattatcaataatacctcatataaaatacaattttt                      <  1:502413‑M2/141‑121 (MQ=255)

                                                                                                                     aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      <  1:451965/141‑1 (MQ=255)

                                                                                                                     aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATAAGACAAattat                      >  2:310194/1‑141 (MQ=255)

                                                                                                                      cTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttag                     >  1:208774‑M2/1‑20 (MQ=255)

                                                                                                                            ttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTaa               <  1:266655/141‑1 (MQ=255)

                                                                                                                            ttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCACACAAATTATTAAGTaa               <  2:176904/141‑1 (MQ=255)

                                                                                                                             tACAAGGTTTCTACGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAt              <  1:56268/141‑1 (MQ=255)

                                                                                                                               cAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggacttttt            <  1:358361‑M2/141‑131 (MQ=255)

                                                                                                                                 aGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttag          <  1:598385‑M2/141‑133 (MQ=255)

                                                                                                                                 aGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataacatcaaggtttataaattaatcattatcaataatacctcatataaaataaaatattggtgactttttag          <  1:107623‑M2/141‑133 (MQ=255)

                                                                                                                                   gTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTCTTAAGTAATGTGaaa        <  1:600801/141‑1 (MQ=255)

                                                                                                                                   gTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTAAATCGGACAATCTACTGATATGAAAAATAATGATGTCGTCATATACAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTCaaa        <  2:215475/141‑1 (MQ=255)

                                                                                                                                     ttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaa      >  1:158/1‑141 (MQ=255)

                                                                                                                                       cTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATAATTAAGTAAAGTGAAAAAAg    >  2:155431/1‑141 (MQ=255)

                                                                                                                                        tAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggacttt   <  1:55652‑M2/141‑140 (MQ=255)

                                                                                                                                         aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCGTATATTAAAAATAATGATGTCGTAATATTTAATTAAGCATTTGCTAATGGTGCACCAGAAAAATTATTAGGTAATGTGTAAAAAGaa  >  1:648998/1‑141 (MQ=255)

ACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128206‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.