Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 629,681 C→A 100% L84I (CTA→ATA)  USA300HOU_0564 → possible 3‑hexulose‑6‑phosphate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730629,6810CA100.0% 281.7 / ‑6.5 83L84I (CTA→ATA) USA300HOU_0564possible 3‑hexulose‑6‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (37/45);  total (38/45)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAT  >  CP000730/629546‑629818
                                                                                                                                       |                                                                                                                                         
gAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGgt                                                                                                                                      <  2:767656/141‑1 (MQ=255)
gAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGgt                                                                                                                                      <  2:767601/141‑1 (MQ=255)
gAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGgt                                                                                                                                      <  1:142569/141‑1 (MQ=255)
gAAGGGTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACCTGAAAATTATAGATGCAGCTGATTATGAAGTTAGACAAGCAATTAAATTTGACGCGGATGTCATTACAACAATAGgt                                                                                                                                      >  2:474781/1‑141 (MQ=255)
  atgtgtACCAGCAGATAAACATATGGCAGACAACATTAGTAATGTAAAAGGATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAAATAAATTTGGCGCGGATGTAATTACAATAATAGgtgt                                                                                                                                    <  1:315203/136‑1 (MQ=255)
  aGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGgtgt                                                                                                                                    <  2:108600/141‑1 (MQ=255)
  aGGTTTACCAGCAGTTAAACATATGGCAGAAAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTGGTATAATAGgtgt                                                                                                                                    <  2:577692/141‑1 (MQ=255)
      ttACCAGCAGTTAAACATATGGCAGAGAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCa                                                                                                                                <  1:471984/141‑1 (MQ=255)
      ttACCAGCAGTTAAACATATGGAAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCa                                                                                                                                <  1:782150/141‑1 (MQ=255)
      ttACCAGCAGTTAAACATATGGAAGACAACAATAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCa                                                                                                                                <  1:100217/141‑1 (MQ=255)
       taacagaagTTAAACATATGGTAGAAAACATTAGTAAAGTAAAAGTAATAGCAGAAATGAAAATTATAGATGAAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  1:59822/138‑1 (MQ=255)
       tACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  1:129919/141‑1 (MQ=255)
       tACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  2:645183/141‑1 (MQ=255)
       tACCAGCAGTTAAACATATGGCAGAAAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  1:535111/141‑1 (MQ=255)
       tACCACCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  2:588861/141‑1 (MQ=255)
       tACAAGCAGTAAAAAATATGGCAGAAAACATTAATAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCag                                                                                                                               <  1:289436/141‑1 (MQ=255)
          cagcagTTAAACATATGGCAGACAGCATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCagaag                                                                                                                            >  1:517877/1‑141 (MQ=255)
          cagcagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCagaag                                                                                                                            >  1:260290/1‑141 (MQ=255)
             cagTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATg                                                                                                                         >  1:81698/1‑141 (MQ=255)
              agTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGc                                                                                                                        >  2:331998/1‑141 (MQ=255)
               gTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATGGAATCAGTGTATTATGAAGGTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCa                                                                                                                       <  1:588826/141‑1 (MQ=255)
                ttAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCAt                                                                                                                      <  2:194731/141‑1 (MQ=255)
                  aaaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCACTTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCa                                                                                                                    >  1:380171/1‑141 (MQ=255)
                   aaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGGAGCTGGTTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATTGGTGTTGCAGAAGATGCATCaa                                                                                                                   >  2:711551/1‑141 (MQ=255)
                   aaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCaa                                                                                                                   >  1:234189/1‑141 (MQ=255)
                   aaCATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTAAAATAATAGGTGTTGCAGAAGATGCATCaa                                                                                                                   >  2:526618/1‑141 (MQ=255)
                     cATATGGCAGACAACATTAGTAATGTTAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAAtt                                                                                                                 >  2:486481/1‑141 (MQ=255)
                     cATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTACAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAAtt                                                                                                                 >  2:242755/1‑141 (MQ=255)
                     cATATGGCAGACAACATTAGAAATGTAATAGTATTAGCAGACATGAAAATTATATATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAAtt                                                                                                                 >  1:524516/1‑141 (MQ=255)
                       tatGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTaa                                                                                                               <  2:372081/141‑1 (MQ=255)
                         tggaaggaacgaTTAGTAATGTAAAAGGATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAag                                                                                                             <  1:173041/130‑1 (MQ=255)
                         tGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAag                                                                                                             <  1:547455/141‑1 (MQ=255)
                            cAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAagcag                                                                                                          <  1:354724/141‑1 (MQ=255)
                                 aacaTTAGTAATGTAAAAGTATGAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTAtt                                                                                                     <  1:237255/141‑1 (MQ=255)
                                         tAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGc                                                                                             <  2:750164/141‑1 (MQ=255)
                                         tAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGc                                                                                             <  1:238101/141‑1 (MQ=255)
                                                aaaGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaa                                                                                      <  1:758425/141‑1 (MQ=255)
                                                aaaGTATAAGCAGACATGAAAATTATAGATGCAGCTGCTTATGAAGTTAGCCAAGCAATTAAAGTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaa                                                                                      <  1:623817/141‑1 (MQ=255)
                                                  aggaTTAGCAGACATGAAAGGTATAGAAGCAGATGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCAGATGAAAATACAATAATAGGTGAAGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaaaa                                                                                    >  2:210976/4‑141 (MQ=255)
                                                  aGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaaaa                                                                                    >  2:463922/1‑141 (MQ=255)
                                                  aGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATaaaaa                                                                                    >  1:558179/1‑141 (MQ=255)
                                                   ttactAGCAGACATTAAAATTATAGATGCAGCGGATTATGAAGTTCGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGACGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAaat                                                                                   <  2:308543/137‑1 (MQ=255)
                                                   gTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAaat                                                                                   <  2:33253/141‑1 (MQ=255)
                                                       tAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  2:609683/1‑141 (MQ=255)
                                                       tAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  2:123208/1‑141 (MQ=255)
                                                       tAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  1:144378/1‑141 (MQ=255)
                                                       tAGCAGACATGAAAACTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  1:600436/1‑141 (MQ=255)
                                                       tAGCAGACATGAAAAATATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAataata                                                                               >  1:600425/1‑141 (MQ=255)
                                                        aGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAAtaataa                                                                              >  2:281982/1‑141 (MQ=255)
                                                          cAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAAc                                                                            >  1:467255/1‑141 (MQ=255)
                                                           aGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACa                                                                           >  1:205167/1‑141 (MQ=255)
                                                            gACATGAAAATTATAGATGCAGCTGATCATGAAGTCAGCCAAGAAAAAAACTGTTGTGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACaa                                                                          <  1:183628/141‑1 (MQ=255)
                                                                     aTTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGtt                                                                 <  1:435491/141‑1 (MQ=255)
                                                                        ataGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTCATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGat                                                              >  2:459854/1‑141 (MQ=255)
                                                                        ataGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGTAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGaa                                                              >  1:180703/1‑140 (MQ=255)
                                                                         taGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGata                                                             <  1:665700/141‑1 (MQ=255)
                                                                          aGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGatat                                                            <  2:158812/141‑1 (MQ=255)
                                                                             tGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAACATAATAAACAATTACTAGTTGATATGAt                                                         <  2:50046/141‑1 (MQ=255)
                                                                              gCAGCTGAATAAGAAGTTAGCCAAGCAATTAAAATTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGAtt                                                        <  1:61918/141‑1 (MQ=255)
                                                                                   tGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAg                                                                   >  2:671932/1‑125 (MQ=255)
                                                                                   tGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAg                                                                   <  1:671932/125‑1 (MQ=255)
                                                                                     aTTATGAAGTTAGCCAAGCAATTAAAATTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAATAAGCTCATAAAAATAATAAACAATTAATAGTTGATATGATCGCTGTTc                                                 >  2:169120/1‑141 (MQ=255)
                                                                                     aTTATGAAGTTAGCAAAGCAAGTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTTAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCtatgc                                                 >  2:554972/1‑137 (MQ=255)
                                                                                           aaGTTAGCCAAGCAATTAAATTTGACGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAACTAATAAACACATACTAGACGATAGGATTGCTGCTCAAGact                                           >  2:412106/1‑139 (MQ=255)
                                                                                             gTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTAATAGTAGATATGATTGCTGTTCAAGATTTa                                         >  2:289032/1‑141 (MQ=255)
                                                                                                 gCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGaaa                                     >  2:139771/1‑141 (MQ=255)
                                                                                                 gCCAAGCAATTAAATTTGGCGCCGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTCAAAGATATGTGAGTTGTTCAAGATTTAGaaa                                     >  2:564862/1‑141 (MQ=255)
                                                                                                        aaTTAAATTGGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAATATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATCAAAATAATAAACAATTACTAGTTTATATGATTGCTGTTCAAGATTTAGAAAAACGTGc                              <  2:380171/141‑1 (MQ=255)
                                                                                                          ttgaaTTTGGCGCGGATGTAATGACAATAATAGGTGTGGCATAAGATGCATCAATGAAATCATCTAGTGAAGAAGCGCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaa                            <  1:165481/138‑1 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          <  1:609683/141‑1 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          <  2:600436/141‑1 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          <  1:123208/141‑1 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          >  1:319881/1‑141 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          <  2:144378/141‑1 (MQ=255)
                                                                                                            aaaTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCaaaa                          <  2:600425/141‑1 (MQ=255)
                                                                                                              aTTTGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGa                        >  2:307267/1‑141 (MQ=255)
                                                                                                                ttGGCGCGGATGTAATTACAATAATAGGTGTTGCAGAAGACGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAAc                      <  2:480096/141‑1 (MQ=255)
                                                                                                                   gcgcGGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACAAg                   >  2:144809/1‑141 (MQ=255)
                                                                                                                    cgcgGATGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGa                  >  1:364164/1‑141 (MQ=255)
                                                                                                                         aTGTAAATACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGaaa             <  2:140753/141‑1 (MQ=255)
                                                                                                                          tGTAATTACAATAATAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAAt            <  1:281982/141‑1 (MQ=255)
                                                                                                                              aTTACAATAATATGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTAAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATgggg        >  2:24000/1‑140 (MQ=255)
                                                                                                                                tACAATAATAGGTGATGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGc      >  2:549676/1‑141 (MQ=255)
                                                                                                                                   aataatAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCAGa   >  1:511675/1‑141 (MQ=255)
                                                                                                                                    ataataGGTGTAGCAGAAGATGCACCAATTAAAGCAGCTATTGAAGAAGATAATAAAAATAATAAACACTTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAt  <  1:175190/141‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                         
GAAGGTTTACCAGCAGTTAAACATATGGCAGACAACATTAGTAATGTAAAAGTATTAGCAGACATGAAAATTATAGATGCAGCTGATTATGAAGTTAGCCAAGCAATTAAATTTGGCGCGGATGTAATTACAATACTAGGTGTTGCAGAAGATGCATCAATTAAAGCAGCTATTGAAGAAGCTCATAAAAATAATAAACAATTACTAGTTGATATGATTGCTGTTCAAGATTTAGAAAAACGTGCAAAAGAACTAGATGAAATGGGTGCTGAT  >  CP000730/629546‑629818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: