| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 1,794,352 | A→T | 5.4% | Y431N (TAT→AAT) | USA300HOU_1678 ← | hypothetical membrane protein | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,794,352 | 0 | A | T | 5.4% | 280.8 / 4.4 | 91 | Y431N (TAT→AAT) | USA300HOU_1678 | hypothetical membrane protein | 
| Reads supporting (aligned to +/- strand): ref base A (38/47); new base T (3/2); total (42/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
CTTGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGTATAAA  >  CP000730/1794217‑1794489                                                                                                                                       |                                                                                                                                          ctTGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATTATGaa                                                                                                                                       <  1:59313/141‑1 (MQ=255)ctTGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTATATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATTATGaa                                                                                                                                       <  2:239681/141‑1 (MQ=255) ttGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTTTTGTTCTTAATGAAc                                                                                                                                      >  2:608007/1‑141 (MQ=255)  tGGTAATTTTTATTTATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACa                                                                                                                                     <  2:638611/141‑1 (MQ=255)  tGGTAATTTTTATTGATTGGTGACGGATGTTTCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAATTTTGTATTCATGTTCATAATGAACa                                                                                                                                     <  2:567261/141‑1 (MQ=255)  tGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACa                                                                                                                                     <  1:448887/141‑1 (MQ=255)  tGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGGTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACa                                                                                                                                     >  1:623924/1‑141 (MQ=255)  tGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTGCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACa                                                                                                                                     <  2:112404/141‑1 (MQ=255)   ggTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCGTTTTTAATGTTCATAATGAAAat                                                                                                                                    >  1:406604/1‑141 (MQ=255)    gTAATTTTTATTGATTGGTGATGGATGATGCCTATAATGATCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACata                                                                                                                                   >  1:718287/1‑141 (MQ=255)     tAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACataa                                                                                                                                  <  1:235101/141‑1 (MQ=255)       aTTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACataaat                                                                                                                                <  1:784684/141‑1 (MQ=255)       aTTTTTAGTGATTGGGGACGGAGGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACataaat                                                                                                                                <  1:527609/141‑1 (MQ=255)        tttttATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACataaata                                                                                                                               >  1:724034/1‑141 (MQ=255)            tatcgctgggTGACGGATGATGCATATAATGTTCAACCGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTACATAGTGAACATAAATAAATg                                                                                                                           <  1:416520/133‑1 (MQ=255)            tATTGATTGGTGACGGATGATGCATATAATGTTCAATCGGAAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTGAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATg                                                                                                                           <  2:358932/141‑1 (MQ=255)            tATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATg                                                                                                                           <  2:628285/141‑1 (MQ=255)            tATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGCTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATg                                                                                                                           <  1:469011/141‑1 (MQ=255)            tATTGACTGTTGCCGCATGATGCATCCAAGTTTCACACGGCAATGATCCCCCTGATGAATCGGCGTTTCGTGGATGATCTTTAATTTGTTGTTTTAACAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATg                                                                                                                           <  1:186315/141‑1 (MQ=255)             attgattgGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGc                                                                                                                          <  1:528089/141‑1 (MQ=255)             attgattgGTCACGGATGATGCATATAATGTTAAATCGGCAATAATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACCGAACTCTTTTTATGTCTTCATAATGAACATAAATAAATGc                                                                                                                          <  1:193720/141‑1 (MQ=255)              ttgattgGTTACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACGGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCa                                                                                                                         <  1:152258/141‑1 (MQ=255)              ttgattgGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTGATAACTGAACTCTTTTTTCATGTTCATAATGAACATAGATAAATGCa                                                                                                                         <  2:519331/141‑1 (MQ=255)              ttgattgGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCa                                                                                                                         <  1:161537/141‑1 (MQ=255)                tattgGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACt                                                                                                                       <  1:327905/140‑1 (MQ=255)                ggtgggTGACGGATGATCGAGATAATGTTCAAACGGCAATGATTCCACTGTAGAAACCTCTTGTCGTGGATGATCTTTAAATTGTTGCTTTAATACCTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACt                                                                                                                       <  1:299037/137‑1 (MQ=255)                gattgGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACt                                                                                                                       >  1:88267/1‑141 (MQ=255)                    ggTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGa                                                                                                                  <  1:326994/141‑1 (MQ=255)                      tGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGata                                                                                                                >  2:708245/1‑141 (MQ=255)                         cGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGatatat                                                                                                             >  1:55633/1‑141 (MQ=255)                             tgatgCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATcaca                                                                                                         >  1:447538/1‑141 (MQ=255)                               attcATATAATTTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATTTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAATATAAATAAATGCACT‑AAGATATATCACAGc                                                                                                       <  2:206263/138‑1 (MQ=255)                               atgCATATAATTTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGc                                                                                                       <  2:511781/141‑1 (MQ=255)                               atgCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGc                                                                                                       <  1:255055/141‑1 (MQ=255)                                         tGTTCAAACTGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATG‑ACTCTAGATAGATCACAGCTAAAACTAGt                                                                                             <  2:779074/141‑1 (MQ=255)                                         tGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATGAATGCACT‑AAGATATATCACAGCTAAAACTAGt                                                                                             >  2:115588/1‑141 (MQ=255)                                            ttaaaCGGGAATGATTCCACTGTATGACCCGCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGAt                                                                                          <  1:65704/139‑1 (MQ=255)                                                  ggCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCt                                                                                    <  1:666634/141‑1 (MQ=255)                                                       tGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAGTAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTtaat                                                                               >  1:69899/1‑141 (MQ=255)                                                       tGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTtaat                                                                               <  1:638343/141‑1 (MQ=255)                                                          ttCCACTGTATAAAACTCTTGGCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATaaa                                                                            >  1:803115/1‑141 (MQ=255)                                                                  tataATCCTCTTGTCGTGTATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGCTGCACTTTTAAAAAAATTAACat                                                                    <  2:711080/141‑1 (MQ=255)                                                                  tataAGCCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACat                                                                    <  2:725358/141‑1 (MQ=255)                                                                  tataAATCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACat                                                                    <  2:21611/141‑1 (MQ=255)                                                                  tataAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATCTATCACAGCTAAAACTAGTGATGCGCCTTTAATAAAATTAACat                                                                    <  1:443999/141‑1 (MQ=255)                                                                  tataAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACat                                                                    <  1:323793/141‑1 (MQ=255)                                                                   ataAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACatt                                                                   >  2:749737/1‑141 (MQ=255)                                                                   ataAACCTCTTGTCGCGGATGATCTTTACTTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTCATATAATTAACatt                                                                   >  1:600518/1‑141 (MQ=255)                                                                     aaaCCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGGACCTGTAAGAAAATTAACattga                                                                 <  1:801298/141‑1 (MQ=255)                                                                     aaaCCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACattga                                                                 >  2:465501/1‑141 (MQ=255)                                                                               tCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATACATACACG‑GATATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTtata                                                       >  1:793914/1‑141 (MQ=255)                                                                               tCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTtatt                                                       >  1:684066/1‑140 (MQ=255)                                                                               tCGCGGATGAGCTTTAATTTGTTGGTTTAATAACTGAACTCTTTTTTCATGTTCATCATTAACATAAATAAATGCACT‑AAGATATATCACAACTAAAAATGGGGATGCACCTTTAATAAAATTAACATTAATTGACTtata                                                       >  2:619861/1‑141 (MQ=255)                                                                                  tGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATAttt                                                    >  1:445634/1‑141 (MQ=255)                                                                                   ggATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTTTTTTTTTTTCTGAACATAAATAACTGCACT‑AAGATATATCCCAGCTTAAAATAGTGATGCAGCTTTATTCAAATTTTCTTTTTTTGACTGATttttt                                                   >  2:74600/1‑140 (MQ=255)                                                                                   ggATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTc                                                   <  2:220901/141‑1 (MQ=255)                                                                                         tCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAAt                                             >  2:746144/1‑141 (MQ=255)                                                                                          ttttAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAAtt                                            <  2:515669/140‑1 (MQ=255)                                                                                          ttttAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAAtt                                            <  2:773938/140‑1 (MQ=255)                                                                                          cTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTTATAATGAAAATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTAACTTATATTTACGAAAtt                                            >  2:694252/1‑141 (MQ=255)                                                                                          cTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAAtt                                            >  2:777549/1‑141 (MQ=255)                                                                                               aTTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCtttt                                       >  2:485679/1‑141 (MQ=255)                                                                                                  tgttgtTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AGGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAATTTAACATTGATTGCCTTATATTTCCGACATTCTTTtaca                                    >  1:753869/1‑139 (MQ=255)                                                                                                    ttgttTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCAACCTTTTTTtaataa                                  >  1:413218/1‑141 (MQ=255)                                                                                                     tgttTTAATAACTGAACTCTTTTTTTTTTTTTTTTATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGAGGCACCTTTAATAAAATTAACATTGTTTTACTTATATTTCCGAAATTCTTTTattaaa                                 >  2:793013/1‑141 (MQ=255)                                                                                                     tgttTTAATAACTGAACTCTTTTTTTTTTTTTATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTTTTTtattttt                                 >  2:757532/1‑136 (MQ=255)                                                                                                     tgttTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTaataaa                                 >  2:248581/1‑141 (MQ=255)                                                                                                               aCTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTaaaa                       >  1:327197/1‑141 (MQ=255)                                                                                                               aCTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTaaaa                       >  1:373102/1‑141 (MQ=255)                                                                                                               aCTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTaaaa                       >  2:713821/1‑141 (MQ=255)                                                                                                               aCTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTaaaa                       <  1:449626/141‑1 (MQ=255)                                                                                                                cTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGAAATATCACAGCTAAAATTAGTGATGCAACTTTTATAAAATTAACATTGAATGAATTATCATTCCCCAATTCATTTAAAAAAAAAAATaacaa                      >  2:52495/1‑138 (MQ=255)                                                                                                                  gAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGa                    >  1:92202/1‑141 (MQ=255)                                                                                                                    aCTCTTTTTTCATGTTCATAATGAACATGAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTTTTTTATTAATATGATTAAAATGAtt                  >  1:675672/1‑141 (MQ=255)                                                                                                                    aCTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCTGAGATTCGTTTAATAACAACATTAAAATGAtt                  >  2:638538/1‑141 (MQ=255)                                                                                                                    aCTCTTTTATCATGTTCATAATGAACATAAATAAATGAACT‑AAGATATATCACATCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTCATGAACTTATCTTTCCGAAATCTTTTTAATAAAATTATTTAaataata                  >  2:141258/1‑140 (MQ=255)                                                                                                                     ttctTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAATTTTAATATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTa                 <  2:489294/140‑1 (MQ=255)                                                                                                                     ctctTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTa                 <  1:708245/141‑1 (MQ=255)                                                                                                                     ctctTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAACAAAATAATTAAAATGATTa                 <  1:485679/141‑1 (MQ=255)                                                                                                                     ctattttttATTGTTCATAATGAACATAAAATAATGCACT‑AAGATTTATCACAGCTAAAACTAGTGATGCACCTTTAAGAATATAAACATTTATTGACTTATATTTCCGCAATTCTTTTAATAAAATAATTAAAATGATTa                 <  2:623796/138‑1 (MQ=255)                                                                                                                          ttttCATGTTTATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGt            <  2:17760/141‑1 (MQ=255)                                                                                                                           tttCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTa           <  2:88267/141‑1 (MQ=255)                                                                                                                              cATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCg        <  1:644214/141‑1 (MQ=255)                                                                                                                              cATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCg        <  2:803115/141‑1 (MQ=255)                                                                                                                              cATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCg        >  1:703317/1‑141 (MQ=255)                                                                                                                               aTGTTCATTATGAACATGAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCCCCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATTATTAAAATGATTACATGCATCGt       >  2:469144/1‑141 (MQ=255)                                                                                                                                 gTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACCGCTAAAAGTAGTGATGCACCTTTAATACAATTAACATTGATTGACTTATATTTCCGGAATTCTTTTAAGAAAATAATGAAATTCATTACATCTTTAGtat     >  1:643150/1‑141 (MQ=255)                                                                                                                                  ttCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGtata    <  1:220004/141‑1 (MQ=255)                                                                                                                                    cATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGTATaaa  >  2:575988/1‑141 (MQ=255)                                                                                                                                    cATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGTATaaa  >  2:277889/1‑141 (MQ=255)                                                                                                                                    cATAATGAACATAAACAAATTTACT‑AAGATATATCACATCTATAACCAGTGATGCAACTGTAATAAAATTAACGTTGATTGACTTATATTGTCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGTATaaa  <  2:65689/141‑1 (MQ=255)                                                                                                                                       |                                                                                                                                          CTTGGTAATTTTTATTGATTGGTGACGGATGATGCATATAATGTTCAAACGGCAATGATTCCACTGTATAAACCTCTTGTCGTGGATGATCTTTAATTTGTTGTTTTAATAACTGAACTCTTTTTTCATGTTCATAATGAACATAAATAAATGCACT‑AAGATATATCACAGCTAAAACTAGTGATGCACCTTTAATAAAATTAACATTGATTGACTTATATTTCCGAAATTCTTTTAATAAAATAATTAAAATGATTACATGTATCGTATAAA  >  CP000730/1794217‑1794489 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |