Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,371,220 C→T 17.1% intergenic (‑4337/+1221) rpmC ← / ← USA300HOU_2234 ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,371,2200CT17.1% 161.7 / 24.6 70intergenic (‑4337/+1221)rpmC/USA300HOU_2234ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2
Reads supporting (aligned to +/- strand):  ref base C (39/19);  new base T (7/5);  total (46/24)
Fisher's exact test for biased strand distribution p-value = 7.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01

CTTCTACTACTGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGGATGATTGTGTAA  >  CP000730/2371080‑2371360
                                                                                                                                            |                                                                                                                                            
cTTCTACTACTGTTACAGGGATTAATTATCAGAGTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTacac                                                                                                                                              >  1:366416/1‑141 (MQ=255)
  tCTACTACTGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCa                                                                                                                                            <  2:127644/141‑1 (MQ=255)
    tactacTGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGa                                                                                                                                          >  2:615008/1‑141 (MQ=255)
       tactGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATgg                                                                                                                                       >  2:552407/1‑141 (MQ=255)
          tGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTaa                                                                                                                                    >  1:349200/1‑141 (MQ=255)
          tGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTaa                                                                                                                                    >  1:349131/1‑141 (MQ=255)
           gTTACAAGCATTAATTCCCCGTTTTCTCCTAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAg                                                                                                                                   <  2:458882/141‑1 (MQ=255)
            ttACAGGGATTAATTCACCTTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGt                                                                                                                                  <  2:361008/141‑1 (MQ=255)
                  ggATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGc                                                                                                                            >  1:458808/1‑141 (MQ=255)
                    aTTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGccc                                                                                                                          >  2:296140/1‑141 (MQ=255)
                     ttAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGccct                                                                                                                         >  1:650018/1‑140 (MQ=255)
                     ttAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCa                                                                                                                         >  2:528352/1‑141 (MQ=255)
                     ttAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCa                                                                                                                         >  2:685640/1‑141 (MQ=255)
                     ttAATTCACCGTTTTCTCAGCCTACTGTTGTTGGCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCa                                                                                                                         >  1:756046/1‑141 (MQ=255)
                      tAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCAt                                                                                                                        >  1:624056/1‑141 (MQ=255)
                         ttCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTaa                                                                                                                     >  2:241731/1‑141 (MQ=255)
                           cACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACAAGATGGTAAGTTTAAGCCCATTAAAg                                                                                                                   >  2:383053/1‑141 (MQ=255)
                            aCCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCAAAGATTCCTTTTTTCATCGAAAGTCCACCGCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGc                                                                                                                  <  1:143207/141‑1 (MQ=255)
                                ttttttCCGAATACTTGTTTCATCCCAATTTTTCTTCCTAAGGTTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCa                                                                                                              <  2:345881/141‑1 (MQ=255)
                                  ttCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCTATGTCTACACCAGATGGTAAGGTTAAGCCCATTAAAGCGTCAAc                                                                                                            >  1:469915/1‑141 (MQ=255)
                                     tcCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCGTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGt                                                                                                         <  2:96619/141‑1 (MQ=255)
                                     tcCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGCTGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGATAACTGt                                                                                                         >  2:17002/1‑141 (MQ=255)
                                      ccGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTGGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGtt                                                                                                        <  2:313149/141‑1 (MQ=255)
                                            aCTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGgt                                                                                                  <  1:7637/141‑1 (MQ=255)
                                                  ttCATCCCAATTTTTCCTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTggg                                                                                            <  1:743180/140‑1 (MQ=255)
                                                  gtCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTggg                                                                                            <  1:743280/141‑1 (MQ=255)
                                                   tCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGt                                                                                           <  1:91031/141‑1 (MQ=255)
                                                      tCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTa                                                                                        >  1:119708/1‑141 (MQ=255)
                                                      tCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTa                                                                                        >  1:665124/1‑141 (MQ=255)
                                                       cccAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTAc                                                                                       <  2:107117/141‑1 (MQ=255)
                                                                 ttttttttttttCCTCTGGTCAGCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATTTCTACACCACATGGTAATTTTAAGCCCATTACAGCTTCAGCTGTTTTTGGGGTTGGGTTTACAATATCGttt                                                                             >  2:342000/11‑141 (MQ=255)
                                                                          aTTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTtg                                                                    <  1:7103/141‑1 (MQ=255)
                                                                               tttGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTgtgtgt                                                               >  1:576441/1‑141 (MQ=255)
                                                                                ttGGTCATCGAAAGTACACGTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTa                                                              >  1:567394/1‑141 (MQ=255)
                                                                                  ggTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACg                                                            <  1:243424/141‑1 (MQ=255)
                                                                                      aTCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACgttgt                                                        <  2:458808/141‑1 (MQ=255)
                                                                                       tCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACgttgtt                                                       >  2:624615/1‑141 (MQ=255)
                                                                                       tCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACCGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACgttgtt                                                       >  2:228789/1‑141 (MQ=255)
                                                                                        cGAAAGTCCACCTCCTGAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTAGGTTGTTc                                                      >  1:450524/1‑141 (MQ=255)
                                                                                        cGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTc                                                      <  2:639668/141‑1 (MQ=255)
                                                                                           aaGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCTACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGaa                                                   >  1:51104/1‑141 (MQ=255)
                                                                                            aGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTTAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGCGTGTACGTTGTTCGAAt                                                  <  2:616273/141‑1 (MQ=255)
                                                                                               ccACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGt                                               >  2:572725/1‑141 (MQ=255)
                                                                                               ccACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGt                                               >  2:413109/1‑141 (MQ=255)
                                                                                                   ctcctAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCAc                                           <  2:469915/141‑1 (MQ=255)
                                                                                                       tAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGCATTTTTCACGTGa                                       >  1:50658/1‑141 (MQ=255)
                                                                                                          aaTTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGGTCGAATTGTTCACGTGAATc                                    >  1:89062/1‑141 (MQ=255)
                                                                                                           aTTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAGTTGTTCACGTGAATCt                                   >  1:349900/1‑141 (MQ=255)
                                                                                                            ttGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCtt                                  >  1:206836/1‑141 (MQ=255)
                                                                                                            ttGTCTATTATAATTTGATTTCGATGTCCACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCtt                                  <  1:528352/141‑1 (MQ=255)
                                                                                                             tGTCTATTATAATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCttt                                 >  2:98411/1‑141 (MQ=255)
                                                                                                             tGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATAttt                                 >  1:249881/1‑141 (MQ=255)
                                                                                                               tCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGGCCATTAAAGCGTCAACTGTTGTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCtttct                               >  1:150395/1‑139 (MQ=255)
                                                                                                               tCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTtat                               <  1:296140/141‑1 (MQ=255)
                                                                                                                cTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTtata                              >  1:141646/1‑141 (MQ=255)
                                                                                                                cTATTATAATTTGATATCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTtata                              >  1:379267/1‑141 (MQ=255)
                                                                                                                  attatAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACt                            >  2:722856/1‑141 (MQ=255)
                                                                                                                  attatAATTTGATTTAAATGTGTAAACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACt                            >  2:163347/1‑141 (MQ=255)
                                                                                                                    tataATTTGATTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTa                          <  1:12366/141‑1 (MQ=255)
                                                                                                                      taATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGCATCTTTATACTTTTg                        >  2:127115/1‑141 (MQ=255)
                                                                                                                          tcgATTTCGATCTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTATTGGAGTGGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacg                    >  2:317260/3‑141 (MQ=255)
                                                                                                                            gATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggc                  >  2:446901/1‑141 (MQ=255)
                                                                                                                            gATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATGAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggc                  >  1:342455/1‑141 (MQ=255)
                                                                                                                             aTTTCGATGTCTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggca                 >  2:280437/1‑141 (MQ=255)
                                                                                                                               ttCTATGTCTACCCCAGATGGTTAGTTTAAGCCCATTAAAGCGTCAATTGCTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggcacg               <  2:518419/141‑1 (MQ=255)
                                                                                                                               ttCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggcacg               >  2:639866/1‑141 (MQ=255)
                                                                                                                               ttCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATgcacggcacg               <  1:615008/141‑1 (MQ=255)
                                                                                                                                  gATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGgat            >  1:531160/1‑141 (MQ=255)
                                                                                                                                    tGTCTACCTCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGgatga          <  2:58202/141‑1 (MQ=255)
                                                                                                                                       cTACATCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGGATGATtg       >  1:695025/1‑141 (MQ=255)
                                                                                                                                        tACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGGATGATtgt      >  1:425781/1‑141 (MQ=255)
                                                                                                                                            ccAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTGCGTTGTGGGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGGATGATTGTGTaa  >  1:61643/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CTTCTACTACTGTTACAGGGATTAATTCACCGTTTTCTCCGAATACTTGTGTCATCCCAATTTTTCTTCCTAAGATTCCTTTGGTCATCGAAAGTCCACCTCCTAAAATTGTCTATTATAATTTGATTTCGATGTCTACACCAGATGGTAAGTTTAAGCCCATTAAAGCGTCAACTGTTTTTGGTGTTGGGTTTACAATATCGATTAAACGTTTGTGTGTACGTTGTTCGAATTGTTCACGTGAATCTTTATACTTATGCACGGCACGGATGATTGTGTAA  >  CP000730/2371080‑2371360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: