| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 76,322 | G→A | 59.9% | intergenic (+380/‑754) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 76,322 | 0 | G | A | 59.9% | 341.9 / inf | 715 | intergenic (+380/‑754) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Reads supporting (aligned to +/- strand): ref base G (150/135); new base A (221/201); total (376/339) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 | |||||||||||
Only 100 of 719 total aligned reads displayed.
ATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAA  >  CP000730/76182‑76460                                                                                                                                            |                                                                                                                                                ataATTTTAACAAAAAGGAGTCTTCTGTATGTACTACTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACg                                                                                                                                        <  1:54069/141‑1 (MQ=255)      taATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgt                                                                                                                                       <  2:107954/141‑1 (MQ=17)        aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtgg                                                                                                                                     <  1:197650/141‑1 (MQ=12)            tAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAATGTGGTGTa                                                                                                                                 >  2:199048/1‑141 (MQ=12)             aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTaa                                                                                                                                >  2:8715/1‑141 (MQ=17)              aCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTCAGGTAACGTGGTGTaaa                                                                                                                               >  2:381996/1‑141 (MQ=12)                aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGACATATTAAGGGAACGTGGTGTAAACg                                                                                                                             >  1:96679/1‑141 (MQ=17)                    aGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTAAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                                                                                         >  2:591276/1‑141 (MQ=17)                     ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                                                        >  1:892/1‑141 (MQ=32)                     ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAAAACGTGGTGTAAACGTtcat                                                                                                                        >  2:183116/1‑141 (MQ=12)                      gtttcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatc                                                                                                                       <  2:19230/138‑1 (MQ=12)                      gagaCTTCTGTATGAACTATTGCAGGTATAAACAGTTGAACAAGGAGGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGACTTATCGTGATATATCTGAAATATTAAGGGAGCGTGGTGGAAACGTtcatc                                                                                                                       <  2:491509/141‑1 (MQ=11)                      gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatc                                                                                                                       >  2:574299/1‑141 (MQ=17)                       ggTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatca                                                                                                                      <  2:616868/140‑1 (MQ=12)                         tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATATGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                                                                                                                    >  1:162274/1‑141 (MQ=17)                          cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTc                                                                                                                   <  2:259035/141‑1 (MQ=12)                          cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTc                                                                                                                   <  2:36114/141‑1 (MQ=17)                             ctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAAc                                                                                                                <  2:213091/141‑1 (MQ=32)                               ttATGAACTATTTCAGATATAAACAATTTAACGAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACga                                                                                                              <  2:51481/140‑2 (MQ=255)                               gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACgg                                                                                                              <  2:649869/141‑1 (MQ=17)                                 aTGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTTGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCTTTCAACGGTc                                                                                                            <  1:482826/141‑1 (MQ=12)                                  tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCt                                                                                                           <  2:606153/141‑1 (MQ=32)                                  tGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCt                                                                                                           >  2:120386/1‑141 (MQ=12)                                    aggtATTTAAGTTAGAGACTATTGATCAAGGATGTTATCACTTTAGCCGGTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGTACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                                         >  2:389470/4‑141 (MQ=11)                                    aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                                         >  2:350771/1‑141 (MQ=12)                                     aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAcc                                                                                                        <  1:37637/141‑1 (MQ=17)                                     aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                                                                        <  2:32334/141‑1 (MQ=12)                                     aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                                                                        >  1:125470/1‑141 (MQ=12)                                     aCTATTTCAGATACAAACAATTTAACAAGGATGTAACCCGTGCATCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAcc                                                                                                        <  1:513775/141‑1 (MQ=11)                                      cTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCg                                                                                                       >  1:290110/1‑141 (MQ=12)                                       tATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGt                                                                                                      <  1:134699/141‑1 (MQ=17)                                       tATTTCAGATATAAACAATATAACAAGGATGATATCACTGTAGCCGTTAGCTACTATCTTAGATATGCATTGAATATACGTCATAAGTCAAATCTATTAACGCACCATGGTATAAACGTTCATCATTCAACGGTCTACCGt                                                                                                      <  2:132314/141‑1 (MQ=2)                                        aTTTCAGATATAAAGAATTTAACAAGGATGTTATCACTGTAGCCATTGGTTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGCTCATACTTCAACAATCTACCGtt                                                                                                     >  1:363554/1‑141 (MQ=11)                                         tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTGTCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATGCTTCACCGGTCTACCGTTg                                                                                                    >  2:582690/1‑141 (MQ=11)                                         tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                                                                                    >  2:238599/1‑141 (MQ=17)                                         tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                                                    <  2:662814/141‑1 (MQ=12)                                          ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTgg                                                                                                   >  2:531181/1‑141 (MQ=12)                                          ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATATACCGTTgg                                                                                                   >  2:505480/1‑141 (MQ=255)                                             aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                                                <  1:393222/141‑1 (MQ=255)                                             aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                                                <  1:469416/141‑1 (MQ=255)                                              gATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTc                                                                                               >  1:80775/1‑141 (MQ=12)                                               atatAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCa                                                                                              <  2:559766/141‑1 (MQ=12)                                                 ataAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTAAACGATCTAACGTTGGGTTCAAg                                                                                            >  2:409274/1‑141 (MQ=11)                                                  taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGa                                                                                           <  2:29139/141‑1 (MQ=255)                                                   aaaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCATGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGaa                                                                                          <  1:571250/141‑1 (MQ=17)                                                    aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAGCGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAat                                                                                         <  1:188620/141‑1 (MQ=17)                                                    aaCAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAat                                                                                         >  2:1437/1‑141 (MQ=17)                                                      cAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAatat                                                                                       >  2:423579/1‑141 (MQ=17)                                                      aaaTTTAAGAAGGATGTTATGACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCCTCATTCAACGGTCTACCGTGGGGTTCAAGAatat                                                                                       >  2:637269/2‑141 (MQ=11)                                                       aaTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATg                                                                                      <  2:218548/141‑1 (MQ=12)                                                        aTTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGc                                                                                     >  2:27394/1‑141 (MQ=17)                                                        aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGc                                                                                     <  1:255480/141‑1 (MQ=255)                                                        aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCAGTGAGCTATCGTGATATATCTGAAAGATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCTTTGAGTTCAAGGATATGc                                                                                     >  1:449176/1‑141 (MQ=11)                                                          ttAACAAGGATGTTATCACTGTATCCCTGGGCTACTATCTAAGGTATGCATTGAGCCATCGTGATACATCTGACATATTAACAAAACGTGGTGTAAACGTTAATCATTCAAAGATCTACCGTTAGGTTCAAGAATACGccc                                                                                   >  2:317450/1‑141 (MQ=11)                                                          ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                                                                                   >  2:463864/1‑141 (MQ=255)                                                          ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                                                                                   >  1:437539/1‑141 (MQ=12)                                                          ttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGccc                                                                                   >  1:264833/1‑141 (MQ=255)                                                           tAACAAGAATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATAAGccc‑c                                                                                 >  2:78179/1‑141 (MQ=11)                                                            aaCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑Ca                                                                                >  1:117608/1‑141 (MQ=17)                                                            aaCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑Ca                                                                                >  1:552661/1‑141 (MQ=17)                                                             aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑Caa                                                                               >  2:448849/1‑141 (MQ=12)                                                             aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑Caa                                                                               >  2:368303/1‑141 (MQ=12)                                                              cAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAAt                                                                              >  1:614662/1‑141 (MQ=17)                                                               aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAAtt                                                                             <  1:649535/141‑1 (MQ=255)                                                               aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAAtt                                                                             >  1:595437/1‑141 (MQ=255)                                                                   gtGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATTGTGATATATCTGAAATATTAAGAGACCGTGGTGTAAACTTTCATCATTCAACGATCGACCGTTGGGTTCAAGAATATTCCC‑CAATTTtat                                                                         <  2:249331/140‑1 (MQ=11)                                                                   aTGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTtat                                                                         <  2:231860/141‑1 (MQ=18)                                                                   aTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACTTCCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTtat                                                                         <  2:472604/141‑1 (MQ=11)                                                                     gTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTatat                                                                       >  2:48029/1‑141 (MQ=255)                                                                      ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATc                                                                      <  1:583946/141‑1 (MQ=255)                                                                      ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATAGGCCC‑CAATTTTatata                                                                      >  1:173058/1‑140 (MQ=255)                                                                       tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCa                                                                     >  1:667855/1‑141 (MQ=34)                                                                        aTCACTTTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCaa                                                                    <  2:564108/141‑1 (MQ=255)                                                                          cattGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAAt                                                                  <  1:222672/138‑1 (MQ=25)                                                                            cTGTAGCTGTTGGCTACTATCTAAGATATGCGTTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGATTATGCCC‑CAATTGTATATCAAAttt                                                                >  2:171760/1‑141 (MQ=255)                                                                            cTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAAttt                                                                <  1:213780/141‑1 (MQ=25)                                                                            cTGTAGCTGTTGGCTAATATCTAAGATATGTATTCAGTTCTAGTGATATATCAGCAATATTATTCTAATGAGATGTAAACGATCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAAttt                                                                >  1:100896/1‑141 (MQ=11)                                                                               tAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCGAGAATATGCCC‑CAATTTTATATCAAATTTgta                                                             >  1:30050/1‑139 (MQ=11)                                                                                 gctgTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGgaag                                                           >  1:494629/4‑141 (MQ=25)                                                                                 gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTCATATCAAATTTGgaag                                                           <  1:332048/141‑1 (MQ=255)                                                                                   tgTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATCTCAAATTTGgaggaa                                                         >  2:331464/2‑141 (MQ=21)                                                                                   cGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGgaagaa                                                         >  1:279461/1‑141 (MQ=255)                                                                                    ggttgctgccaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAACAGTAAGGGAACGTCGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATGTGGAAGaaa                                                        <  2:550571/131‑1 (MQ=11)                                                                                       ggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAg                                                     <  1:356866/141‑1 (MQ=255)                                                                                        gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGc                                                    <  1:525986/141‑1 (MQ=35)                                                                                        gCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGc                                                    >  1:339627/1‑141 (MQ=255)                                                                                        gCTACTATCTAAGATATGCATTGAGCTATAGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCTCAAACCTCT‑GCAAATTTGGAAGAAAAAGc                                                    <  2:305709/141‑1 (MQ=11)                                                                                           actaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATa                                                 >  1:244905/1‑141 (MQ=255)                                                                                            ctaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATATAACGTAGGTGTCAAGACTAAGGTC‑CAATTTTATGTCAAATTTGGAAGCGAAAGCATaa                                                <  1:487612/141‑1 (MQ=11)                                                                                            ctaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACCGGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaa                                                <  2:153868/141‑1 (MQ=11)                                                                                             taTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                               <  2:283118/141‑1 (MQ=35)                                                                                               tCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                                             <  1:32381/141‑1 (MQ=35)                                                                                               ccTAAGATAGGCATTGAGCCATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaa                                             <  1:232316/140‑1 (MQ=11)                                                                                                 tAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCA‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaacaaag                                           >  1:143197/1‑139 (MQ=11)                                                                                                  aaGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagc                                          >  1:636747/1‑138 (MQ=18)                                                                                                   aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct                                         >  1:427044/1‑137 (MQ=17)                                                                                                    gATATGCTTTGAGTTATCGTGGTATATCTGAAATATTAAGGGAACGGGGTGTAGATTTTCATCATTCAACGGTCTTCCGTGGCGTTGAAGAATATTCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagctt                                        <  2:434274/141‑6 (MQ=11)                                                                                                      tatGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagcttat                                      <  1:306274/141‑8 (MQ=1)                                                                                                                            aagcTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGAc                <  2:163895/138‑1 (MQ=255)                                                                                                                                   aaTATTAAGGGAACGTGGTGTAAACGCTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAACTTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATc         <  1:402028/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           ATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCC‑CAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAATAA  >  CP000730/76182‑76460 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |