Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8700AC76.1% 418.0 / 109.1 203intergenic (‑953/‑215)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (27/21);  new base C (69/84);  total (98/105)
Fisher's exact test for biased strand distribution p-value = 1.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 203 total aligned reads displayed.

GATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAG  >  CP000730/1929734‑1930009
                                                                                                                                              |                                                                                                                                           
gATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACCCAGAGAGGAGGGG‑TA‑T‑AA‑G‑G‑TGGTGCt                                                                                                                                         >  1:426188/1‑141 (MQ=255)
            cAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGAATACTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTcc                                                                                                                             >  1:820676/1‑140 (MQ=255)
              gCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCGATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTcaca                                                                                                                           >  1:967235/1‑141 (MQ=255)
                   aaTCATATAACTTATCAGAAGCACGACACGCATCGTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATa                                                                                                                      >  1:1181381/1‑141 (MQ=255)
                   aaTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATa                                                                                                                      >  1:189808/1‑141 (MQ=255)
                    aTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCACTTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAg                                                                                                                     <  1:757344/141‑1 (MQ=255)
                    aTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAg                                                                                                                     >  1:1157875/1‑141 (MQ=255)
                                    atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGCGTCGCCTATCTCTCAGGCGTCAA‑‑TGGACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCCGTGGc                                                                                                    >  1:46988/15‑141 (MQ=255)
                                    atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                                    >  1:664111/15‑141 (MQ=255)
                                    atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                                    >  1:7122/15‑141 (MQ=255)
                                    atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                                    >  1:744380/15‑141 (MQ=255)
                                    atcggaagtaaatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                                    >  1:865399/15‑141 (MQ=255)
                                      cggaagtagattggCTTGTATCTTCACAGATGGTATAATAATAGAGTTGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                                                  <  1:284243/128‑1 (MQ=255)
                                      cggaagtagatatgCTTGTATATTCACAGATGGTATTATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                                                  <  1:807625/129‑1 (MQ=255)
                                      cggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                                                  <  1:750142/129‑1 (MQ=255)
                                       ggaagtagcgatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑CACGAAGAGAGGAGGGG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:110058/130‑1 (MQ=255)
                                       ggaagtagatatgCTTGTATATTCACAGATGGTATAATAGTATAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:220096/130‑1 (MQ=255)
                                       ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:762080/130‑1 (MQ=255)
                                       ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:607844/130‑1 (MQ=255)
                                       ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 >  1:166253/12‑141 (MQ=255)
                                       ggaagtagatatgCTTATATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:1155764/130‑1 (MQ=255)
                                       ggaagtagatatccTTGGATATTCACAGATGGTCTAATAAGCGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGCGAGGAGGTG‑CA‑TCAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                                 <  1:118825/128‑1 (MQ=255)
                                        gaagtagatatgCTTGTATATTCACAGATGGTATAATATTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGGTCCAGTCATCAGTGGCtgtg                                                                                                <  1:775460/131‑1 (MQ=255)
                                        gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GGCGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                                                <  1:696491/131‑1 (MQ=255)
                                        gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                                                <  1:495867/131‑1 (MQ=255)
                                        gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTAGCTCGCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                                                >  1:523427/11‑141 (MQ=255)
                                         aagtagatatgCTTGTATATTCACATATGGTATAATAATAGAGTCGCCTATCACTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                                               <  1:1068089/132‑1 (MQ=255)
                                         aagtagatatgCTTGTACATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtgt                                                                                               <  1:299273/132‑2 (MQ=255)
                                          agtagatatgCTTGTCTATTCACAGATGGTATACTAATCGACGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                                              <  1:148485/133‑2 (MQ=255)
                                          aGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGGG‑AC‑A‑AA‑G‑G‑GGATGCTGATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                                               >  1:274486/1‑141 (MQ=255)
                                           gtagatatgCTTGTAGACTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGctg                                                                                             <  1:651023/134‑3 (MQ=255)
                                           gTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGcc                                                                                              <  1:1043703/141‑1 (MQ=255)
                                           gTGACGGTGCTCGTATACTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGcc                                                                                              <  1:90382/141‑1 (MQ=255)
                                            tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                                            <  1:314853/135‑4 (MQ=255)
                                              ggtatgCTTGTATAGTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttg                                                                                          <  1:321010/137‑6 (MQ=255)
                                               cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                                          <  1:934729/141‑1 (MQ=255)
                                               cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                                          <  1:263953/141‑1 (MQ=255)
                                               atatgCTTGTATATTCACAGATGGTATAATAATAGCGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                         <  1:176400/138‑7 (MQ=255)
                                               atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                         >  1:310434/4‑135 (MQ=255)
                                               atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                         <  1:345829/138‑7 (MQ=255)
                                               atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                         <  1:263363/138‑7 (MQ=255)
                                                 atgCTTGTATATTCACAGATGGGATTATGATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                       >  1:580586/2‑141 (MQ=255)
                                                   gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                                     <  1:478577/141‑3 (MQ=255)
                                                     ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                   <  1:1066516/141‑5 (MQ=255)
                                                      tGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttt                                                                                   <  1:724571/141‑1 (MQ=255)
                                                       gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑C‑T‑TAAAACGCTAGTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattgta                                                                                 >  1:568148/12‑138 (MQ=255)
                                                       gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                 <  1:979020/141‑7 (MQ=255)
                                                             tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                           >  1:1036745/6‑141 (MQ=255)
                                                                 agtaggaataataataGAGTCGCCGATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                       <  1:860205/134‑1 (MQ=255)
                                                                 agatggtATAATAATATAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                       >  1:709184/2‑141 (MQ=255)
                                                                   atggtataGTAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                     <  1:606608/137‑3 (MQ=255)
                                                                    tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                    <  1:952024/138‑4 (MQ=255)
                                                                    tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                    <  1:379193/138‑4 (MQ=255)
                                                                    tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                    <  1:531945/138‑4 (MQ=255)
                                                                    cggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                    <  1:7669/138‑4 (MQ=255)
                                                                     ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                   <  1:785005/139‑1 (MQ=255)
                                                                     gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                    >  1:518255/1‑141 (MQ=255)
                                                                      gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCCTCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                  >  1:229174/2‑141 (MQ=255)
                                                                        ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttcgtaaa                                                                >  1:126692/1‑134 (MQ=255)
                                                                        ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                <  1:60039/141‑3 (MQ=255)
                                                                           ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                             >  1:500026/5‑141 (MQ=255)
                                                                           ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGtcaacgc                                                             >  1:408210/5‑135 (MQ=255)
                                                                            tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCCCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                                             <  1:399065/141‑1 (MQ=255)
                                                                             aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                           <  1:974108/139‑1 (MQ=255)
                                                                             aatagAGTCCCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCAGTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                           <  1:458221/139‑1 (MQ=255)
                                                                               aagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                         <  1:117787/140‑3 (MQ=255)
                                                                                agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                        >  1:633476/1‑138 (MQ=255)
                                                                                 gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACACAATAc                                                        <  1:64222/141‑1 (MQ=255)
                                                                                  agTCGCCTATCTCTCAGGCGTTAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑N‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                      <  1:938697/141‑6 (MQ=255)
                                                                                   gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCCT‑T‑CC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCCGTACTACGTGGCTGTGCTGTTGCGTATTATACTTATTGGCCTAGTacaagccacaaata                                                     >  1:244010/1‑128 (MQ=255)
                                                                                    tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                    >  1:392365/1‑134 (MQ=255)
                                                                                     cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                   >  1:77955/1‑133 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                                   <  1:250660/141‑1 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                                   <  1:213130/141‑1 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCagcaaataaat                                                  >  1:978384/1‑131 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaccaaatcatt                                                  >  1:106580/1‑131 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                  >  1:180035/1‑132 (MQ=255)
                                                                                      gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                  >  1:489197/1‑132 (MQ=255)
                                                                                       ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATa                                                  >  1:325124/1‑141 (MQ=255)
                                                                                       ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAATCGCaacaaataatta                                                 >  1:1094697/1‑131 (MQ=255)
                                                                                       ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                 <  1:178854/141‑11 (MQ=255)
                                                                                       ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                 >  1:311701/1‑131 (MQ=255)
                                                                                       ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                 >  1:1144503/1‑131 (MQ=255)
                                                                                        cTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAg                                                 >  1:501790/1‑141 (MQ=255)
                                                                                        cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                                >  1:1040243/1‑130 (MQ=255)
                                                                                         tATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATCTTCGTTCACATCATAGCACCCGTCATCAGTGGCCGTGCCATGGCGTTTTTTTCTTACTGGCTCAGTAGCCGCAATCCAAAATAgg                                                >  1:92434/1‑141 (MQ=255)
                                                                                         tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                               <  1:135530/141‑13 (MQ=255)
                                                                                         tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataattaat                                               >  1:439651/1‑127 (MQ=255)
                                                                                         tATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                               <  1:375974/141‑13 (MQ=255)
                                                                                          aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                              >  1:492117/1‑128 (MQ=255)
                                                                                          aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                              >  1:658626/1‑128 (MQ=255)
                                                                                          aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                              >  1:611370/1‑128 (MQ=255)
                                                                                          aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                              >  1:547946/1‑128 (MQ=255)
                                                                                          aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                              >  1:965972/1‑128 (MQ=255)
                                                                                           tctctcAGGCGTCAATT‑‑GACGGAGAGAGGAGGTG‑CA‑T‑TACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                                             >  1:1131445/1‑127 (MQ=255)
                                                                                           tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATT‑AC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                                             <  1:684032/141‑15 (MQ=255)
                                                                                            ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                                             <  1:1011347/141‑1 (MQ=255)
                                                                                                      tCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCg                                   >  1:448631/1‑141 (MQ=255)
                                                                                                           ttAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCa                              >  1:1153555/1‑141 (MQ=255)
                                                                                                                       aggaggTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGGGACATATAGCCGCACCAATaaaaacaccc                  >  1:793547/1‑136 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑T‑AA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAG  >  CP000730/1929734‑1930009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑