Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9170CT67.1% 168.6 / 125.6 146intergenic (‑1000/‑168)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (23/25);  new base T (57/41);  total (80/66)
Fisher's exact test for biased strand distribution p-value = 2.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 149 total aligned reads displayed.

GTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAA  >  CP000730/1929777‑1930054
                                                                                                                                                  |                                                                                                                                                    
gTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATCGCACCAGTCATCAGTGGCTGTGcc                                                                                                                                                      >  1:478772/1‑141 (MQ=255)
gTGACGGTGCTCGTATACTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGcc                                                                                                                                                      <  1:90382/141‑1 (MQ=255)
    cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                                                                                                  <  1:934729/141‑1 (MQ=255)
    cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                                                                                                  <  1:263953/141‑1 (MQ=255)
      gtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCg                                                                                                                                                <  1:500657/141‑1 (MQ=255)
      atgCTTGTATATTCACAGATGGGATTATGATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                               >  1:580586/2‑141 (MQ=255)
       tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGt                                                                                                                                               <  1:218406/141‑1 (MQ=255)
         cTTGTATCTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                                                                            <  1:1157811/141‑4 (MQ=255)
         cTTGTATATTCACAGATTGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                                                                            <  1:490916/141‑4 (MQ=255)
          ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                                                                           >  1:984803/1‑140 (MQ=255)
          ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                                                                           <  1:1066516/141‑5 (MQ=255)
           tGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttt                                                                                                                                           <  1:724571/141‑1 (MQ=255)
           tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                                                                                          <  1:103372/141‑6 (MQ=255)
            gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                                                                         >  1:626034/1‑138 (MQ=255)
            gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                                                                         <  1:979020/141‑7 (MQ=255)
             tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttttt                                                                                                                                         <  1:323851/141‑1 (MQ=255)
             tataTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatac                                                                                                                                        <  1:864198/141‑8 (MQ=255)
               tatTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGGGGCTGTGCCATTGCGTTTTTTTCt                                                                                                                                       >  1:966244/1‑141 (MQ=255)
                   tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAtt                                                                                                                                   >  1:688153/1‑141 (MQ=255)
                     cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                >  1:1195223/3‑141 (MQ=255)
                     cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                >  1:1059432/3‑141 (MQ=255)
                      agatggtATAATAATATAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                               >  1:709184/2‑141 (MQ=255)
                       gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                              <  1:943323/141‑2 (MQ=255)
                        atggtataGTAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                                                                             <  1:606608/137‑3 (MQ=255)
                         tggtataATCATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTCCT‑T‑TGCTAACC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                            <  1:1134943/138‑4 (MQ=255)
                         tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                            <  1:952024/138‑4 (MQ=255)
                         tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                            <  1:531945/138‑4 (MQ=255)
                         cggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                            <  1:7669/138‑4 (MQ=255)
                          ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                           >  1:18727/3‑141 (MQ=255)
                          ggtataATAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑TC‑GAACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATTAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                           <  1:567894/139‑1 (MQ=255)
                          gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                            >  1:518255/1‑141 (MQ=255)
                           gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                          >  1:1150696/2‑141 (MQ=255)
                           gtataATAATAGAGACGCCAATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                          >  1:654600/2‑141 (MQ=255)
                             ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttcgtaaa                                                                                                                        >  1:126692/1‑134 (MQ=255)
                             ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                        <  1:60039/141‑3 (MQ=255)
                             ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                        >  1:1096169/1‑139 (MQ=255)
                               aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                      >  1:52299/1‑141 (MQ=255)
                               aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                      >  1:140341/1‑141 (MQ=255)
                                ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                     >  1:500026/5‑141 (MQ=255)
                                 tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCCCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                                                                                                     <  1:399065/141‑1 (MQ=255)
                                 taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTTGCTTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                <  1:577424/138‑1 (MQ=255)
                                  aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑a                                                                                                             <  1:974108/139‑1 (MQ=255)
                                  aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑a                                                                                                             >  1:730975/3‑141 (MQ=255)
                                     agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaa                                                                                                          >  1:633476/1‑138 (MQ=255)
                                      gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACAC‑‑‑‑A‑‑ATAc                                                                                                          <  1:64222/141‑1 (MQ=255)
                                        gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCCT‑TCC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCCGTACTACGTGGCTGTGCTGTTGCGTATTATACTTATTGGCCTAGTacaagccacaaata                                                                                                             >  1:244010/1‑128 (MQ=255)
                                        gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaata                                                                                                       >  1:317207/1‑135 (MQ=255)
                                         tCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTCTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACaa‑‑a                                                                                                     <  1:757264/141‑1 (MQ=255)
                                          cGCCTATCTCTCAGGCGTCACTT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAAAC‑ATTTTCGTTCACATCATAGCACCTGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                     >  1:773507/1‑133 (MQ=255)
                                          cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATCCaa‑‑aa                                                                                                    <  1:598075/141‑1 (MQ=255)
                                          cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                     >  1:77955/1‑133 (MQ=255)
                                          cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TGA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                     >  1:1067975/1‑133 (MQ=255)
                                           gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AAt                                                                                                   <  1:720508/141‑1 (MQ=255)
                                           gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AAt                                                                                                   <  1:213130/141‑1 (MQ=255)
                                           gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑agcaaataaat                                                                                                      >  1:978384/1‑131 (MQ=255)
                                           gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑accaaatcatt                                                                                                      >  1:106580/1‑131 (MQ=255)
                                           gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatt                                                                                                    >  1:489197/1‑132 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATa                                                                                                  >  1:306647/1‑141 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATa                                                                                                  >  1:325124/1‑141 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAATCGC‑‑‑‑a‑‑acaaataatta                                                                                                   >  1:1094697/1‑131 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatta                                                                                                   >  1:403916/1‑131 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatta                                                                                                   <  1:178854/141‑11 (MQ=255)
                                            ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatta                                                                                                   >  1:311701/1‑131 (MQ=255)
                                             cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                  >  1:464136/1‑130 (MQ=255)
                                             cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                  >  1:1040243/1‑130 (MQ=255)
                                             cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑A‑‑ACACAT‑‑AAttaa                                                                                                >  1:1178768/1‑138 (MQ=255)
                                             cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGa‑‑‑‑a‑‑acaaatacttca                                                                                                  >  1:254830/1‑130 (MQ=255)
                                              tATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATCTTCGTTCACATCATAGCACCCGTCATCAGTGGCCGTGCCATGGCGTTTTTTTCTTACTGGCTCAGTAGCCGC‑‑‑‑A‑‑ATCCAA‑‑AATAgg                                                                                                >  1:92434/1‑141 (MQ=255)
                                              tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                 <  1:135530/141‑13 (MQ=255)
                                              tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                 <  1:476941/141‑13 (MQ=255)
                                              tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTC‑G‑T‑TTGCGAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaaa                                                                                                 >  1:231940/1‑129 (MQ=255)
                                              tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataattaat                                                                                                       >  1:439651/1‑127 (MQ=255)
                                              tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                 >  1:380844/1‑129 (MQ=255)
                                              tATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                 <  1:375974/141‑13 (MQ=255)
                                               aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGt                                                                                               >  1:644885/1‑141 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGGGGGGGTG‑CATTAC‑T‑T‑TGCTCATC‑ATTTTCGTTAACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGACTTAGTAAACGC‑‑‑‑aggaaataattaaga                                                                                                  >  1:298266/1‑127 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaata                                                                                                <  1:546493/141‑14 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaata                                                                                                >  1:611370/1‑128 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaata                                                                                                <  1:820379/141‑14 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaata                                                                                                >  1:965972/1‑128 (MQ=255)
                                               aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATC‑ATTGTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaata                                                                                                <  1:670192/141‑14 (MQ=255)
                                                tctctcAGGCGTCAATT‑‑GACGGAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaatag                                                                                               >  1:1131445/1‑127 (MQ=255)
                                                tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaatag                                                                                               >  1:180/1‑127 (MQ=255)
                                                 ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGa                                                                                             <  1:1011347/141‑1 (MQ=255)
                                                           tCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑g                                                                                >  1:448631/1‑141 (MQ=255)
                                                                ttAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCa                                                                           >  1:1153555/1‑141 (MQ=255)
                                                                            aggaggTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGGGAC‑ATAT‑AGCC‑GCACCAATaaaaacaccc                                                               >  1:793547/1‑136 (MQ=255)
                                                                                          a‑G‑G‑TGATTCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTCCGTATCTTTCGTGTTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTatttgcg                                                   <  1:1172372/141‑7 (MQ=255)
                                                                                                 gATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAg                                               >  1:1039652/1‑141 (MQ=255)
                                                                                                       t‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGCCGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                         >  1:78405/1‑141 (MQ=255)
                                                                                                       t‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                         <  1:1180361/141‑1 (MQ=255)
                                                                                                        tagtttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                         <  1:188501/138‑1 (MQ=255)
                                                                                                         tttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTACTATCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAgggg                                        <  1:814629/140‑1 (MQ=255)
                                                                                                                         tAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑AACAAATAATTAATAGGCGACTTTATAAGCCGGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcata                             >  1:652019/1‑141 (MQ=255)
                                                                                                                          aGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAA‑‑ATAATT‑‑AATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcatta                            >  1:390247/1‑139 (MQ=255)
                                                                                                                                    atcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtttt             >  1:789197/1‑141 (MQ=255)
                                                                                                                                      caGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCg           >  1:100896/1‑141 (MQ=255)
                                                                                                                                           gCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATGCAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATCGTGAGGGGGTTGGTGTATAAGTAAATACTTATTTTCGTTggc      >  1:338506/1‑139 (MQ=255)
                                                                                                                                               tgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTaa  >  1:55996/1‑141 (MQ=255)
                                                                                                                                               tgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTaa  <  1:677620/141‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
GTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAA  >  CP000730/1929777‑1930054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑