Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9300TA67.7% 154.1 / 114.8 127intergenic (‑1013/‑155)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (23/18);  new base A (53/33);  total (76/51)
Fisher's exact test for biased strand distribution p-value = 5.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

TATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTT  >  CP000730/1929790‑1930070
                                                                                                                                                 |                                                                                                                                                   
tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttttt                                                                                                                                                     <  1:323851/141‑1 (MQ=255)
  tatTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGGGGCTGTGCCATTGCGTTTTTTTCt                                                                                                                                                   >  1:966244/1‑141 (MQ=255)
     tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                               >  1:1036745/6‑141 (MQ=255)
      tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAtt                                                                                                                                               >  1:688153/1‑141 (MQ=255)
        cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                            >  1:1059432/3‑141 (MQ=255)
        cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                            >  1:1195223/3‑141 (MQ=255)
         agtaggaataataataGAGTCGCCGATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                           <  1:860205/134‑1 (MQ=255)
         agatggtATAATAATATAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                           >  1:709184/2‑141 (MQ=255)
         agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                           <  1:95483/140‑1 (MQ=255)
          gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                                          <  1:943323/141‑2 (MQ=255)
            tggtataATCATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTCCT‑T‑TGCTAACCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                                        <  1:1134943/138‑4 (MQ=255)
            tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                                        <  1:531945/138‑4 (MQ=255)
            cggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                                                                                        <  1:7669/138‑4 (MQ=255)
             ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                       >  1:18727/3‑141 (MQ=255)
             ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                       <  1:785005/139‑1 (MQ=255)
             ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                       <  1:978584/139‑1 (MQ=255)
             ggtataATAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑TC‑GAACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATTAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                       <  1:567894/139‑1 (MQ=255)
             gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                                        >  1:518255/1‑141 (MQ=255)
              gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCCTCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                                      >  1:229174/2‑141 (MQ=255)
              gtataATAATAGAGACGCCAATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                                      >  1:654600/2‑141 (MQ=255)
                ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                    <  1:60039/141‑3 (MQ=255)
                ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                    >  1:1096169/1‑139 (MQ=255)
                  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                                  >  1:140341/1‑141 (MQ=255)
                  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                                  <  1:1187643/141‑1 (MQ=255)
                   ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                 >  1:500026/5‑141 (MQ=255)
                   ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGtcaacgc                                                                                                                                 >  1:408210/5‑135 (MQ=255)
                   ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATCGGCTTAGTAAACGc                                                                                                                                 <  1:625886/141‑1 (MQ=255)
                    tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCCCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                                                                                                                 <  1:399065/141‑1 (MQ=255)
                    taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTTGCTTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                            <  1:577424/138‑1 (MQ=255)
                     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aa                                                                                                                           <  1:974108/139‑1 (MQ=255)
                     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aa                                                                                                                           >  1:730975/3‑141 (MQ=255)
                     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aa                                                                                                                           <  1:77591/139‑1 (MQ=255)
                       tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AAt                                                                                                                          <  1:6056/141‑1 (MQ=255)
                       aagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aaca                                                                                                                         <  1:117787/140‑3 (MQ=255)
                        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaa                                                                                                                        >  1:633476/1‑138 (MQ=255)
                         gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACAC‑‑‑‑AATAc                                                                                                                        <  1:64222/141‑1 (MQ=255)
                          agTCGCCTATCTCTCAGGCGTTAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑N‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaat                                                                                                                      <  1:938697/141‑6 (MQ=255)
                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaat                                                                                                                      <  1:31063/141‑6 (MQ=255)
                           gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCCT‑TCC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCCGTACTACGTGGCTGTGCTGTTGCGTATTATACTTATTGGCCTAGTacaagccacaaata                                                                                                                         >  1:244010/1‑128 (MQ=255)
                           gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaata                                                                                                                     >  1:317207/1‑135 (MQ=255)
                            tCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTCTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACaaa                                                                                                                     <  1:757264/141‑1 (MQ=255)
                            tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataa                                                                                                                    >  1:392365/1‑134 (MQ=255)
                             cGCCTATCTCTCAGGCGTCACTT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAAACATTTTCGTTCACATCATAGCACCTGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataat                                                                                                                   >  1:773507/1‑133 (MQ=255)
                             cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATCCaaaa                                                                                                                    <  1:598075/141‑1 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAAt                                                                                                                   <  1:720508/141‑1 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAAt                                                                                                                   <  1:213130/141‑1 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAAt                                                                                                                   <  1:250660/141‑1 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑agcaaataaat                                                                                                                  >  1:978384/1‑131 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑accaaatcatt                                                                                                                  >  1:106580/1‑131 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataatt                                                                                                                  >  1:489197/1‑132 (MQ=255)
                              gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataatt                                                                                                                  >  1:180035/1‑132 (MQ=255)
                               ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATa                                                                                                                  >  1:306647/1‑141 (MQ=255)
                               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAATCGC‑‑‑‑aacaaataatta                                                                                                                 >  1:1094697/1‑131 (MQ=255)
                               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataatta                                                                                                                 >  1:1144503/1‑131 (MQ=255)
                                cTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAg                                                                                                                 >  1:501790/1‑141 (MQ=255)
                                cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaa                                                                                                                >  1:464136/1‑130 (MQ=255)
                                cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑AACACATAAttaa                                                                                                                >  1:330212/1‑138 (MQ=255)
                                cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGa‑‑‑‑aacaaatacttca                                                                                                                >  1:254830/1‑130 (MQ=255)
                                 tATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATCTTCGTTCACATCATAGCACCCGTCATCAGTGGCCGTGCCATGGCGTTTTTTTCTTACTGGCTCAGTAGCCGC‑‑‑‑AATCCAAAATAgg                                                                                                                >  1:92434/1‑141 (MQ=255)
                                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaat                                                                                                               <  1:476941/141‑13 (MQ=255)
                                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaat                                                                                                               <  1:135530/141‑13 (MQ=255)
                                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataattaat                                                                                                                   >  1:439651/1‑127 (MQ=255)
                                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattcat                                                                                                               >  1:10785/1‑129 (MQ=255)
                                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaat                                                                                                               >  1:380844/1‑129 (MQ=255)
                                 tATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaat                                                                                                               <  1:375974/141‑13 (MQ=255)
                                  aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGt                                                                                                               >  1:644885/1‑141 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGGGGGGGTG‑CATTAC‑T‑T‑TGCTCATCATTTTCGTTAACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGACTTAGTAAACGC‑‑‑‑aggaaataattaaga                                                                                                              >  1:298266/1‑127 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              <  1:546493/141‑14 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              <  1:820379/141‑14 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              >  1:611370/1‑128 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              >  1:658626/1‑128 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              >  1:965972/1‑128 (MQ=255)
                                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTGTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaata                                                                                                              <  1:670192/141‑14 (MQ=255)
                                   tctctcAGGCGTCAATT‑‑GACGGAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaatag                                                                                                             >  1:1131445/1‑127 (MQ=255)
                                   tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaatag                                                                                                             >  1:180/1‑127 (MQ=255)
                                    ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGa                                                                                                             <  1:1011347/141‑1 (MQ=255)
                                          ggCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑Atat‑a                                                                                                     >  1:132270/1‑141 (MQ=255)
                                              tCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑g                                                                                                >  1:448631/1‑141 (MQ=255)
                                                   ttAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCa                                                                                           >  1:1153555/1‑141 (MQ=255)
                                                     aGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAAt                                                                                         >  1:1066500/1‑141 (MQ=255)
                                                               aggaggTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGGGAC‑ATAT‑AGCC‑GCACCAATaaaaacaccc                                                                               >  1:793547/1‑136 (MQ=255)
                                                                             a‑G‑G‑TGATTCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTCCGTATCTTTCGTGTTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTatttgcg                                                                   <  1:1172372/141‑7 (MQ=255)
                                                                                    gATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAg                                                               >  1:1039652/1‑141 (MQ=255)
                                                                                    gATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAg                                                               >  1:527032/1‑141 (MQ=255)
                                                                                          tATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGCCGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                                         >  1:78405/1‑141 (MQ=255)
                                                                                          tATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                                         <  1:1180361/141‑1 (MQ=255)
                                                                                           tttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTACTATCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAgggg                                                        <  1:814629/140‑1 (MQ=255)
                                                                                                cGTTCACATCAGAGCACCAGTCAGCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTgg                                                   <  1:646858/141‑1 (MQ=255)
                                                                                                           tAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa                                        >  1:1157386/1‑141 (MQ=255)
                                                                                                            aGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAATAATTAATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcatta                                            >  1:390247/1‑139 (MQ=255)
                                                                                                                    tcatcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAAtccggatt                               >  1:321166/1‑134 (MQ=255)
                                                                                                                      atcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtttt                             >  1:789197/1‑141 (MQ=255)
                                                                                                                        caGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCg                           >  1:100896/1‑141 (MQ=255)
                                                                                                                             gCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATGCAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATCGTGAGGGGGTTGGTGTATAAGTAAATACTTATTTTCGTTggc                      >  1:338506/1‑139 (MQ=255)
                                                                                                                                gtgCCATTGCGTTTTTTTCTTATTGGCTAAATAGACGC‑‑‑‑AATACAAAATACGTGAC‑ATAT‑AGCC‑GCACCAATAAAAACCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTa                   <  1:20743/141‑1 (MQ=255)
                                                                                                                                 tgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTaa                  <  1:677620/141‑1 (MQ=255)
                                                                                                                                 tgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTaa                  >  1:55996/1‑141 (MQ=255)
                                                                                                                                             tttttCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTaa      <  1:524387/141‑1 (MQ=255)
                                                                                                                                               tttCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAACAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTCTCTTAATTATACTGCTAAtt    <  1:754361/141‑1 (MQ=255)
                                                                                                                                                 tCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATATGTGAC‑ATAT‑AGCC‑GCAATAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATCCTTATTTTCGTTGTCTTAATTATACTGCTAAtttt  >  1:226943/1‑141 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
TATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTT  >  CP000730/1929790‑1930070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑