Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8430A.73.3% 421.9 / 250.5 208intergenic (‑926/‑242)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (28/27);  new base . (68/83);  total (97/111)
Fisher's exact test for biased strand distribution p-value = 5.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 209 total aligned reads displayed.

CATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAT  >  CP000730/1929706‑1929983
                                                                                                                                         |                                                                                                                                                  
cATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGAc                                                                                                                                                 >  1:358062/1‑141 (MQ=255)
      aTTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCagag                                                                                                                                           <  1:735576/141‑1 (MQ=255)
      aTTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCagag                                                                                                                                           <  1:111423/141‑1 (MQ=255)
                ttAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATACTAGTAGAGTAGAATCTAACGCAGGCGTCAATTTAGACGCAGAGAGGAGGTGta                                                                                                                                 <  1:1177452/141‑1 (MQ=255)
                       tAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑Tg                                                                                                                     >  1:860046/1‑141 (MQ=255)
                                        cAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGAATACTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTcc                                                                                                   >  1:820676/1‑140 (MQ=255)
                                          gCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCGATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTcaca                                                                                                 >  1:967235/1‑141 (MQ=255)
                                          gCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGGGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTcaca                                                                                                 >  1:280292/1‑141 (MQ=255)
                                               aaTCATATAACTTATCAGAAGCACGACACGCATCGTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATa                                                                                            >  1:1181381/1‑141 (MQ=255)
                                                aTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCACTTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAg                                                                                           <  1:757344/141‑1 (MQ=255)
                                                  cATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCTGAGAGGAGGTGTA‑T‑TA‑G‑G‑TGATGCTT‑TTTTTCGTTCACATCTTAGcc                                                                                         >  1:443935/1‑140 (MQ=255)
                                                                atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          <  1:431364/127‑1 (MQ=255)
                                                                atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:664111/15‑141 (MQ=255)
                                                                atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:7122/15‑141 (MQ=255)
                                                                atcggaagtaaatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:865399/15‑141 (MQ=255)
                                                                  cggaagtagatatgCTTGTATATTCACAGATGGTATTATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                        <  1:807625/129‑1 (MQ=255)
                                                                  cggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                        <  1:750142/129‑1 (MQ=255)
                                                                   ggaggtggagatgCTTGTATATTCACAGAGGGTATAGTAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGCGGTGCA‑TCAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:789687/130‑1 (MQ=255)
                                                                   ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:607844/130‑1 (MQ=255)
                                                                   ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:762080/130‑1 (MQ=255)
                                                                   ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       >  1:166253/12‑141 (MQ=255)
                                                                   ggaagtagatatccTTGGATATTCACAGATGGTCTAATAAGCGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGCGAGGAGGTGCA‑TCAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:118825/128‑1 (MQ=255)
                                                                    gaagtagatatgCTTGTATATTCACAGATGGTATAATATTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGGTCCAGTCATCAGTGGCtgtg                                                                      <  1:775460/131‑1 (MQ=255)
                                                                    gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GGCGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      <  1:696491/131‑1 (MQ=255)
                                                                    gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTAGCTCGCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      >  1:523427/11‑141 (MQ=255)
                                                                     aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                     <  1:1041961/132‑1 (MQ=255)
                                                                      agtagatatgCTTGTCTATTCACAGATGGTATACTAATCGACGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:148485/133‑2 (MQ=255)
                                                                      agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:248816/133‑2 (MQ=255)
                                                                      agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:424383/133‑2 (MQ=255)
                                                                      agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:263942/133‑2 (MQ=255)
                                                                      agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:27163/133‑2 (MQ=255)
                                                                      agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAA‑‑TGGACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTGCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:493637/133‑2 (MQ=255)
                                                                       gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGctg                                                                   >  1:455211/8‑139 (MQ=255)
                                                                       gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                   >  1:313477/8‑139 (MQ=255)
                                                                       gtagatatgCTTGTAGACTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGctg                                                                   <  1:651023/134‑3 (MQ=255)
                                                                       gTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATCGCACCAGTCATCAGTGGCTGTGcc                                                                    >  1:478772/1‑141 (MQ=255)
                                                                       gTGACGGTGCTCGTATACTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGcc                                                                    <  1:90382/141‑1 (MQ=255)
                                                                        tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                  <  1:191888/135‑4 (MQ=255)
                                                                        tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                  <  1:496124/135‑4 (MQ=255)
                                                                        gagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTATCGTGACTCAAGT‑‑GAAGAAGATAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                  <  1:226194/135‑4 (MQ=255)
                                                                           cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                <  1:934729/141‑1 (MQ=255)
                                                                           atatgCTTGTATATTCACAGATGGTATAATAATAGCGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                               <  1:176400/138‑7 (MQ=255)
                                                                             gtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCg                                                              <  1:500657/141‑1 (MQ=255)
                                                                             atgCTTGTATATTCACAGATGGGATTATGATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                             >  1:580586/2‑141 (MQ=255)
                                                                              tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGt                                                             <  1:218406/141‑1 (MQ=255)
                                                                                cTTGTATCTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                          <  1:1157811/141‑4 (MQ=255)
                                                                                cTTGTATATTCACAGATTGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                          <  1:490916/141‑4 (MQ=255)
                                                                                  tGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttt                                                         <  1:724571/141‑1 (MQ=255)
                                                                                   gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑C‑T‑TAAAACGC‑TAGTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattgta                                                       >  1:568148/12‑138 (MQ=255)
                                                                                   gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                       >  1:626034/1‑138 (MQ=255)
                                                                                   gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                       <  1:979020/141‑7 (MQ=255)
                                                                                    tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttttt                                                       <  1:323851/141‑1 (MQ=255)
                                                                                         tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                 >  1:1036745/6‑141 (MQ=255)
                                                                                            cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                              >  1:1059432/3‑141 (MQ=255)
                                                                                             agatggtATAATAATATAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                             >  1:709184/2‑141 (MQ=255)
                                                                                               atggtataGTAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                           <  1:606608/137‑3 (MQ=255)
                                                                                                tggtataATAATAGAGTCGCCTATCTTTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                          <  1:289782/138‑1 (MQ=255)
                                                                                                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:379193/138‑4 (MQ=255)
                                                                                                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:952024/138‑4 (MQ=255)
                                                                                                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:531945/138‑4 (MQ=255)
                                                                                                cggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:7669/138‑4 (MQ=255)
                                                                                                 ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         >  1:18727/3‑141 (MQ=255)
                                                                                                 ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         <  1:785005/139‑1 (MQ=255)
                                                                                                 ggtataATAATAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         <  1:638976/139‑1 (MQ=255)
                                                                                                 gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                          >  1:518255/1‑141 (MQ=255)
                                                                                                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttcgtaaa                                      >  1:126692/1‑134 (MQ=255)
                                                                                                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                      <  1:60039/141‑3 (MQ=255)
                                                                                                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                      >  1:1096169/1‑139 (MQ=255)
                                                                                                        tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCCCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                   <  1:399065/141‑1 (MQ=255)
                                                                                                         aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                 <  1:974108/139‑1 (MQ=255)
                                                                                                           aagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                               <  1:117787/140‑3 (MQ=255)
                                                                                                              agTCGCCTATCTCTCAGGCGTTAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑N‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                            <  1:938697/141‑6 (MQ=255)
                                                                                                              agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                            <  1:31063/141‑6 (MQ=255)
                                                                                                               gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                           >  1:317207/1‑135 (MQ=255)
                                                                                                                tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                          >  1:392365/1‑134 (MQ=255)
                                                                                                                 cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                         >  1:77955/1‑133 (MQ=255)
                                                                                                                 cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑GA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                         >  1:1067975/1‑133 (MQ=255)
                                                                                                                  gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCagcaaataaat                        >  1:978384/1‑131 (MQ=255)
                                                                                                                   ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATa                        >  1:306647/1‑141 (MQ=255)
                                                                                                                   ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                       <  1:178854/141‑11 (MQ=255)
                                                                                                                   ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                       >  1:1144503/1‑131 (MQ=255)
                                                                                                                    cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                      >  1:464136/1‑130 (MQ=255)
                                                                                                                    cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACACATAAttaa                      >  1:330212/1‑138 (MQ=255)
                                                                                                                    cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGaaacaaatacttca                      >  1:254830/1‑130 (MQ=255)
                                                                                                                     tATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATCTTCGTTCACATCATAGCACCCGTCATCAGTGGCCGTGCCATGGCGTTTTTTTCTTACTGGCTCAGTAGCCGCAATCCAAAATAgg                      >  1:92434/1‑141 (MQ=255)
                                                                                                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                     <  1:476941/141‑13 (MQ=255)
                                                                                                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                     <  1:135530/141‑13 (MQ=255)
                                                                                                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TC‑G‑T‑TTGCGAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaaa                     >  1:231940/1‑129 (MQ=255)
                                                                                                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattcat                     >  1:10785/1‑129 (MQ=255)
                                                                                                                     tATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                     <  1:375974/141‑13 (MQ=255)
                                                                                                                      aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                     >  1:644885/1‑141 (MQ=255)
                                                                                                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:658626/1‑128 (MQ=255)
                                                                                                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:547946/1‑128 (MQ=255)
                                                                                                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:611370/1‑128 (MQ=255)
                                                                                                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:965972/1‑128 (MQ=255)
                                                                                                                       tctctcAGGCGTCAATT‑‑GACGGAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                   >  1:1131445/1‑127 (MQ=255)
                                                                                                                       tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                   <  1:684032/141‑15 (MQ=255)
                                                                                                                        ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                   <  1:1011347/141‑1 (MQ=255)
                                                                                                                                       ttAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCa    >  1:1153555/1‑141 (MQ=255)
                                                                                                                                         aGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAt  >  1:1066500/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                                  
CATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAT  >  CP000730/1929706‑1929983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑