Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 2,018,612 G→A R103* (CGA→TGA)  mgt ← transglycosylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,018,6120GA100.0% 168.9 / NA 53R103* (CGA→TGA) mgttransglycosylase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (30/23);  total (30/23)

CGATCATTATCATAAAAATAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCGTTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAATACATGATACCAATAA  >  CP000730/2018476‑2018749
                                                                                                                                        |                                                                                                                                         
cGATCATTATCATAAAAATAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCa                                                                                                                                       >  1:904034/1‑141 (MQ=255)
agaccataagcATAAAAAAAATTTTGCACAACCTGCTGTCTAATGGTCCTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCa                                                                                                                                       <  1:410555/131‑1 (MQ=255)
 gATCATTATCATAAAAATAATTTATGACAACTGGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAAtcattcat                                                                                                                                      >  1:286950/1‑141 (MQ=255)
       tATCATAAAAATAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCa                                                                                                                                >  1:980590/1‑141 (MQ=255)
              aaaaTAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAAt                                                                                                                         <  1:401184/141‑1 (MQ=255)
              aaaaTAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAAt                                                                                                                         <  1:1157767/141‑1 (MQ=255)
                aataatTTTTGACAACGTGTTGTGTAATGGTACTACCACCTTGTACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATaa                                                                                                                       <  1:377011/141‑1 (MQ=255)
                 ataatTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATaaa                                                                                                                      <  1:1094647/141‑1 (MQ=255)
                   aatTTTTGACAACTTGTTGTGTAATGGTACTAGCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGCTGTACCGTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAgg                                                                                                                    <  1:338748/141‑1 (MQ=255)
                   aatTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAgg                                                                                                                    >  1:850069/1‑141 (MQ=255)
                   aatTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAgg                                                                                                                    >  1:755483/1‑141 (MQ=255)
                   aatTTTTGACAACTTGTTGTATAGTGGTCCTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGTTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAgg                                                                                                                    <  1:828463/141‑1 (MQ=255)
                     tttttGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATGTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGGATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCa                                                                                                                  >  1:820030/1‑141 (MQ=255)
                     tttttGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCa                                                                                                                  >  1:204778/1‑141 (MQ=255)
                       tttGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCAcc                                                                                                                <  1:146650/141‑1 (MQ=255)
                              ccctgtcgtGTAATGCTACTACCCCCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAGGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACa                                                                                                         <  1:10514/138‑1 (MQ=255)
                                ttgttgTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATa                                                                                                       <  1:882549/141‑1 (MQ=255)
                                    tgtgTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAACATAAAGCGCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATCctct                                                                                                   >  1:628948/1‑141 (MQ=255)
                                          aTGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGCAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAGCATACTCTGGCAtt                                                                                             >  1:853224/1‑140 (MQ=255)
                                                   ccaccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCt                                                                                    >  1:227909/1‑141 (MQ=255)
                                                      ccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTGGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCGTGTTATCAGCTggc                                                                                 >  1:249519/1‑139 (MQ=255)
                                                      ccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCCCCTTTAACATACACTGGCATGTTGTCAGcgacc                                                                                 >  1:197411/1‑137 (MQ=255)
                                                      ccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGac                                                                                 >  1:913129/1‑141 (MQ=255)
                                                      ccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAAGCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGATTGTTATCAGCTGac                                                                                 >  1:348808/1‑141 (MQ=255)
                                                      ccTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTCCCAAATTGAATCCATGATGATGGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGac                                                                                 >  1:226959/1‑141 (MQ=255)
                                                          gCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCGGCTGACACaa                                                                             >  1:315272/1‑141 (MQ=255)
                                                          gCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACaa                                                                             >  1:642739/1‑141 (MQ=255)
                                                          gCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACaa                                                                             >  1:806483/1‑141 (MQ=255)
                                                               tctcTGTCGCTAATCGATGCAAATAAAGCTCTAGTTGTGCCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATGGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAacta                                                                        >  1:668953/1‑141 (MQ=255)
                                                                       gCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTAtt                                                                >  1:791644/1‑141 (MQ=255)
                                                                       gCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTAtt                                                                >  1:791520/1‑141 (MQ=255)
                                                                        cTACTCGTTGAAAATAAAGCTCTATTTGCACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTAttt                                                               <  1:219453/141‑1 (MQ=255)
                                                                             cGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTCTCAGCTGACACAAAACTACTTTTATTTTCAAt                                                          >  1:825070/1‑141 (MQ=255)
                                                                                    aaTAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTAAATTTTTCtt                                                   >  1:239360/1‑141 (MQ=255)
                                                                                        aaGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGtt                                               <  1:1089854/141‑1 (MQ=255)
                                                                                        aaGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTACATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGtt                                               <  1:319349/141‑1 (MQ=255)
                                                                                               aGTTGTACCTTTCAAATCGAATCCCTGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCcac                                        <  1:497116/141‑1 (MQ=255)
                                                                                                   gTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACAttt                                    >  1:641196/1‑140 (MQ=255)
                                                                                                   gTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTa                                    >  1:735436/1‑141 (MQ=255)
                                                                                                   gTACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTa                                    >  1:128454/1‑141 (MQ=255)
                                                                                                    tACCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTAt                                   <  1:906484/141‑1 (MQ=255)
                                                                                                     aCCTTTCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATc                                  <  1:843724/141‑1 (MQ=255)
                                                                                                      cccttCAAATCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATcg                                 <  1:471331/138‑1 (MQ=255)
                                                                                                            aaaTCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCCCATTATcgtgcgtt                           >  1:463955/1‑135 (MQ=255)
                                                                                                            aaaTCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTa                           >  1:74906/1‑141 (MQ=255)
                                                                                                            aaaTCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTa                           >  1:464061/1‑141 (MQ=255)
                                                                                                              aTCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGa                         <  1:907200/141‑1 (MQ=255)
                                                                                                              aTCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGa                         <  1:715866/141‑1 (MQ=255)
                                                                                                               tCGAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCCCCTGTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACACTATCGCGTGTAGAt                        <  1:624917/141‑1 (MQ=255)
                                                                                                                 gAATCCATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATaa                      >  1:229979/1‑141 (MQ=255)
                                                                                                                      cATGATGATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAAt                 <  1:1046173/141‑1 (MQ=255)
                                                                                                                       atgatgATTGTAGAATCATTCATCTTCCATTGAAATAGAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAATa                <  1:1110919/141‑1 (MQ=255)
                                                                                                                       atgatgATTGTAGAATCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAATa                >  1:1179237/1‑141 (MQ=255)
                                                                                                                                     aTCATTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAATACATGATACCAATaa  <  1:810356/141‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                         
CGATCATTATCATAAAAATAATTTTTGACAACTTGTTGTGTAATGGTACTACCACCTTGCACATCTCTGTCGCTAATCGTTGAAAATAAAGCTCTAGTTGTACCTTTCAAATCGAATCCATGATGATTGTAGAATCGTTCATCTTCCATTGAAATAAAGGCACCTTTAACATACTCTGGCATGTTATCAGCTGACACAAAACTACTTTTATTTTCAATTTTTCTTAGTTCATCCACATTATCGCGTGTAGATAAAAAATACATGATACCAATAA  >  CP000730/2018476‑2018749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑