New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1442900 =NA (NA)4 (0.080) 3/246 NT NA intergenic (+133/+135) telA/USA300HOU_1341 tellurite resistance protein/IS1272 transposase
?CP000730 1442915 = NA (NA)intergenic (+148/+120) telA/USA300HOU_1341 tellurite resistance protein/IS1272 transposase

ATTACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAC  >  CP000730/1442768‑1443029
                                                                                                                                    |                                                                                                                                 
aTTAAGAATTAGATATAAAAAAAAATAGCTTGTGACATTAAGTTTCTTAAAGTTCTTAGGCAATGTAAAAAAGGTGTTTACTATAATGTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGt                                                                                                                            <  1:126541/140‑1 (MQ=18)
 ttACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGtt                                                                                                                           <  2:91778/140‑1 (MQ=255)
  tACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAAGCAGCTTTTTTGCTATGTATTTTATAATGTACAGCTCGTTg                                                                                                                          >  2:544766/1‑140 (MQ=255)
       aTTAGAGAAAAAAAAAAAGAGTCTGGGACATTAAGTTCCTTAAAGTTCTTAGGAAAAGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAgctg                                                                                                                     <  2:85886/140‑1 (MQ=17)
              ataACAAAAAAGAGCTTGGGACATTAAGTTCCTTATAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATATTGTACAGCTCGTTGAGCTGCTAtttt                                                                                                              >  1:356796/1‑140 (MQ=255)
                aaCAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTcc                                                                                                            >  1:260289/1‑140 (MQ=255)
                   aaaaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTta                                                                                                         >  1:592964/1‑140 (MQ=255)
                   aaaaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTta                                                                                                         >  2:641362/1‑140 (MQ=255)
                     aaaaGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATATCTATTATTTATTTGATAGAAATCAGCTTATTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTtata                                                                                                       >  1:593849/1‑140 (MQ=255)
                          agCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTTTATTAAg                                                                                                  >  1:465927/1‑140 (MQ=255)
                               gggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTTTTTGCTAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACACCTCGTTGAGCTGCTATTTTCCTTATATTATCTGCCa                                                                                             >  1:303767/1‑140 (MQ=14)
                               gggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCa                                                                                             >  2:629253/1‑140 (MQ=255)
                                ggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                                                            >  2:567748/1‑140 (MQ=255)
                                ggACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAACTTTTTTGCTATGTATTTTGAGTTTAACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                                                            >  1:50812/1‑140 (MQ=14)
                                 gACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTTTTTCACTTAAAGCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAtt                                                                                           <  1:317276/140‑1 (MQ=14)
                                 gACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAtt                                                                                           >  1:195175/1‑140 (MQ=255)
                                        aGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACaa                                                                                    >  2:313585/1‑140 (MQ=40)
                                                     tCTTAGGCAATGTAAAACAGCTCCTTTCTATTATTTATTTGATAGAAATCAGCTTTTTTTATATGGATTTTATAATTTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCg                                                                       <  2:627851/140‑1 (MQ=11)
                                                      cTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGt                                                                      <  1:488674/140‑1 (MQ=33)
                                                      aatatgCAATGTAAAAAATCTTAATTATAATATTTATTTTATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTACCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGt                                                                      <  1:283619/135‑1 (MQ=11)
                                                        tAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGttt                                                                    >  2:602912/1‑140 (MQ=33)
                                                        tAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGttt                                                                    <  2:370120/140‑1 (MQ=33)
                                                         aGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTa                                                                   >  2:447606/1‑140 (MQ=33)
                                                                   aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATAGAAAACCTAGCTCTCGTTTAACtttattta                                                         >  2:422794/1‑140 (MQ=18)
                                                                   aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACtttattta                                                         >  1:565422/1‑140 (MQ=33)
                                                                   aaaaaGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACtttattta                                                         >  1:250377/1‑140 (MQ=33)
                                                                             tttCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAAc                                               >  1:442919/1‑140 (MQ=33)
                                                                             tttCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAAc                                               >  1:133121/1‑140 (MQ=33)
                                                                                     atttatttGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTc                                       <  1:453699/140‑1 (MQ=31)
                                                                                     atttatttGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTc                                       <  2:426552/140‑1 (MQ=31)
                                                                                                                          ttttaATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAc  <  2:468708/137‑1 (MQ=1)
                                                                                                                                    |                                                                                                                                 
ATTACGAATTAGATATAACAAAAAAGAGCTTGGGACATTAAGTTCCTTAAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTATTTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCATTAATACAAAACCTAGCTCTCGTTTAACTTTATTTATTCCTCGAACTGACATTCGAGTGAAACCCAAAATAGCCTTCATAAATCCAAAAAC  >  CP000730/1442768‑1443029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.