| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2850830 | 25 (0.860) | 3 (0.110) | 3/268 | 3.4 | 11.2% | intergenic (+29/+90) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein |
| ? | CP000730 | = 2850851 | 25 (0.950) | intergenic (+50/+69) | pcp/USA300HOU_2693 | C15 family pyroglutamyl‑peptidase I/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGAGCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2850670‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaaAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAATGGCAT < CP000730/2850851‑2850706 CCAGAGCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACA > 1:52388/1‑149CCAGAGCAGGTCAATGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGNACAAACA > 2:231429/1‑149 AGCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAG > 2:247429/1‑149 AGCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAG > 2:298914/1‑149 GCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGC < 1:95930/149‑1 CGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTA > 1:71893/1‑149 AAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTG < 2:71893/149‑1 AGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACAACTAGCCCTGGGCACAACGGAATAGTTATAAGAGCACAAACAAAAGCACCCTAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTT < 1:264891/149‑1 TAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAATGGCAT < 2:139221/149‑1 TAAAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAATGGCAT < 2:139370/149‑1 CCAGAGCAGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2850670‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaaAGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAATGGCAT < CP000730/2850851‑2850706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |