Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,724,706 G→T 12.6% P192T (CCA→ACA)  alaS ← alanine‑‑tRNA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,724,7060GT12.6% 72.8 / 5.6 32P192T (CCA→ACA) alaSalanine‑‑tRNA ligase
Reads supporting (aligned to +/- strand):  ref base G (15/13);  new base T (2/2);  total (17/15)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.57e-02

AGGCCATACGCTCAAGCCCCATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATACGACTTTCTTCAAGCCCA  >  CP000730/1724571‑1724845
                                                                                                                                       |                                                                                                                                           
aGGCCATACGCTCAAGCCCCATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACa                                                                                                                                        >  2:205874/1‑141 (MQ=255)
               gCCCCATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGAt                                                                                                                         <  1:24014/141‑1 (MQ=255)
               gCCCCATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGAt                                                                                                                         <  1:219422/141‑1 (MQ=255)
                 cccATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCg                                                                                                                       >  2:293475/1‑141 (MQ=255)
                             tctatatTTTTATTAGGTAAGGGGGGGTAACTATGATTTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCatat                                                                                                           <  2:61877/138‑1 (MQ=255)
                                   tttttATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTtct                                                                                                     >  2:185762/1‑141 (MQ=255)
                                                 tggtggGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGGTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGaa                                                                                       <  2:20836/141‑1 (MQ=255)
                                                 tGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATTCTTCAAGATAGCTTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGaa                                                                                       <  2:66104/141‑1 (MQ=255)
                                                    tgtgtAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGTATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAAt                                                                                    >  1:343457/1‑141 (MQ=255)
                                                    tgtgtAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGTATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAAt                                                                                    >  1:361941/1‑141 (MQ=255)
                                                                   tttATGATGATTGAATTCACGTAATACTAAGTTCCATACTTCAAGCTAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTcc                                                                     <  2:193322/141‑1 (MQ=255)
                                                                        tatGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAg                                                                >  2:312741/1‑141 (MQ=255)
                                                                         atGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAgg                                                               <  2:73552/141‑1 (MQ=255)
                                                                          agATTGAATTCACTAACTACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGc                                                              <  1:8434/140‑1 (MQ=255)
                                                                                   tCACTAAATACTAAGTTCCATACTTCAAGATAGCGGTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGCTCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCa                                                     >  2:66197/1‑141 (MQ=255)
                                                                                     aCTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAat                                                   <  1:382213/141‑1 (MQ=255)
                                                                                       tAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAatat                                                 >  2:82564/1‑141 (MQ=255)
                                                                                        aaaTACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATc                                                <  1:381497/141‑1 (MQ=255)
                                                                                        aaaCACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATc                                                <  1:381451/141‑1 (MQ=255)
                                                                                              tAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGaa                                          >  1:101003/1‑141 (MQ=255)
                                                                                                      aTACTCCAAGATAGCGCTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGCCCGTCTGGCCCATGCGCTTCCCCGCGCTCATAGCAACCCACAGCGGCCGGTCCTGAAGGCCCCTCACCAATCTCCCacgactcgccgt                                  >  2:74460/1‑130 (MQ=255)
                                                                                                         cTTCAAGATAGCGTTCATTTTCTCCACCTGGATACGTTTCTTCTGCCGGATCGTCTTGTCCCTATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCaa                               >  2:221077/1‑141 (MQ=255)
                                                                                                          ttCAAGATAGCGTTCATTTTCTCCACCTGTATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAAt                              <  2:361941/141‑1 (MQ=255)
                                                                                                          ttCAAGATAGCGTTCATTTTCTCCACCTGTATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAAt                              <  2:343457/141‑1 (MQ=255)
                                                                                                           tCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATg                             >  1:110403/1‑141 (MQ=255)
                                                                                                           tCAAGATAGCGTTCATTTTCACCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGGTCATAGAAAATCTCAGTGTTCGGTCCTCAGGGCCCTTCAGCAATATCCCAGAAGTTACCTTCAATg                             >  1:240209/1‑141 (MQ=255)
                                                                                                                     gtccATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTCCTCCGCGATCCTAGAAAATCTCACTGTTCTTTCCGGAAGGCACTATGCCGATAGCCCAGGAGTTACCTTCAATGAGAATAATAc                   <  1:289495/138‑1 (MQ=255)
                                                                                                                     gTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATAc                   <  1:205874/141‑1 (MQ=255)
                                                                                                                           tttCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTTAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATACGACttt             >  2:245932/1‑141 (MQ=255)
                                                                                                                           tttCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAGGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATTCGACttt             >  2:433/1‑141 (MQ=255)
                                                                                                                              ctcCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATACGACTatctt          >  1:153171/1‑141 (MQ=255)
                                                                                                                              ctcCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAAAAATACGACTttctt          >  1:391525/1‑141 (MQ=255)
                                                                                                                                      ggATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATACGACTTTCTTCAAGCCCa  >  1:272679/1‑141 (MQ=255)
                                                                                                                                       |                                                                                                                                           
AGGCCATACGCTCAAGCCCCATGCCAGTATCAATATTTTTATTAGGTAATGGTGTGTAACTATGATCTTTATTATGATTGAATTCACTAAATACTAAGTTCCATACTTCAAGATAGCGTTCATTTTCTCCACCTGGATACATTTCTTCTGCCGGATCGTCTTGTCCATATGCTTCTCCGCGATCATAGAAAATCTCAGTGTTCGGTCCTGAAGGCCCTTCACCAATATCCCAGAAGTTACCTTCAATGCGAATAATACGACTTTCTTCAAGCCCA  >  CP000730/1724571‑1724845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: