| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description | 
| RA | CP000730 | 76,295 | T→C | 53.2% | intergenic (+353/‑781) | USA300HOU_0072 → / → USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 76,295 | 0 | T | C | 53.2% | 131.9 / inf | 711 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase | 
| Reads supporting (aligned to +/- strand): ref base T (166/162); new base C (203/170); total (374/337) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 716 total aligned reads displayed.
AGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑AAAAAGCTAATTACAAATGGCG  >  CP000730/76158‑76434                                                                                                                                         |                                                                                                                                                gtgtggtGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGt                                                                                                                                         <  2:520859/135‑1 (MQ=0)     cTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                                                                                                                                       <  2:609282/141‑1 (MQ=35)               attGAAATTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGaa                                                                                                                             <  1:907025/140‑1 (MQ=255)                      ttataGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTaa                                                                                                                      <  1:385716/140‑1 (MQ=14)                       tattatataATTTTAAGAAAAAGGAGGCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAg                                                                                                                     <  2:1037203/136‑1 (MQ=255)                         taatataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCAGCTGCCGACGACCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAgag                                                                                                                   >  1:822979/4‑139 (MQ=11)                         taGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAActagaagggg                                                                                                                   >  2:901425/1‑134 (MQ=255)                         taGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAggg                                                                                                                   <  2:120660/141‑1 (MQ=17)                           atataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGACATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGaa                                                                                                                 <  1:671917/140‑1 (MQ=12)                            tataATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGTCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAAc                                                                                                                <  1:761384/141‑1 (MQ=255)                              taATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgt                                                                                                              >  1:1040007/1‑141 (MQ=17)                                aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTTTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATTACTGAAAAATTAAAAGAACgtgg                                                                                                            >  2:693493/1‑141 (MQ=11)                                aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATATGAAATATTAAGAGAACgtgg                                                                                                            >  1:659836/1‑141 (MQ=12)                                  tatAACAAAAAGGAGTCTGCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTCATGTCTCCGTTGTGGATTGACTTATCGTGATATATCTGAAATATTAAGGGAACgtggtg                                                                                                          <  1:411880/139‑1 (MQ=11)                                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                                                                                       <  1:247264/141‑1 (MQ=17)                                     aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCGACTATCTAAGATATGCATTGAGATATCGTGATATATCTGAAAAATTAAGAGAACGTGGTGTaa                                                                                                       >  2:239415/1‑141 (MQ=255)                                       cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAAc                                                                                                     >  2:338973/1‑141 (MQ=17)                                        aaaaaTGGGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTCGGCTACACAATCCGCCATGTATATATGTATCCTGCTATATCTGAAATATTAAGGGAGCTTGGTGTAATCg                                                                                                    <  2:484060/141‑1 (MQ=2)                                          aaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGtt                                                                                                  >  1:539577/1‑141 (MQ=32)                                           aaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGTAAAATTAAGGGAACGTGGTGTAAAGGTtc                                                                                                 >  1:1027799/1‑141 (MQ=255)                                             ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcat                                                                                               >  2:865518/1‑141 (MQ=17)                                              gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatc                                                                                              >  1:155972/1‑141 (MQ=17)                                              gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTtcatc                                                                                              >  2:736966/1‑141 (MQ=12)                                               ggTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                                                                                             <  2:1009807/140‑1 (MQ=17)                                                gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGCCTACAATCCAAGATATGCATTGAGTTATCGTGATATATCTGAACTATTAACGGAGCTTGGTGTAAACGGccatcaa                                                                                            >  2:500177/1‑140 (MQ=11)                                                gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTATAGCGGTTGGCTACTATCTAAGATATGCATTGAAATATCGTGATACATCTGGAATATTAAGGGATTGTGGGGTAACCGTtcagtag                                                                                            >  1:615829/1‑137 (MQ=11)                                                 tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                                                                                           >  2:370139/1‑141 (MQ=17)                                                 tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                                                                                           >  1:569657/1‑141 (MQ=17)                                                 tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTTATCAtt                                                                                           >  1:180545/1‑141 (MQ=12)                                                 tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCAtt                                                                                           >  2:768329/1‑141 (MQ=12)                                                   ttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCa                                                                                         <  1:370677/141‑1 (MQ=32)                                                     ctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTGTCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAAc                                                                                       >  2:623547/1‑141 (MQ=12)                                                       tcaTGAACTTATTCTGATATAAACCATTTATCAAAGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGGTATCGTGATATATCTGAAACATTAAGGGAACGTGGTGTAAACGGTCATCATTCAACgg                                                                                     <  2:956849/139‑1 (MQ=11)                                                         aTGAATTAGTTCAGATATAAACAATGTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATc                                                                                   <  2:320771/141‑1 (MQ=11)                                                            aaCTATTTCAGATATAAAGAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                >  2:802006/1‑141 (MQ=255)                                                            aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATGTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                                                                                >  1:107257/1‑141 (MQ=17)                                                            aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATAGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                                                                                <  1:353367/141‑1 (MQ=17)                                                            aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTAc                                                                                >  2:1050366/1‑141 (MQ=32)                                                            aaCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAc                                                                                >  1:789669/1‑141 (MQ=255)                                                               tATTTCGGATATAAACAATTTAACAAGGATGTTATCACTGTAGGCGTTGGTTACTATCTAAGATATGCATTGAGCTATCGTGAGATATCTGAAATATTAAGAGACCGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                                                             <  2:460709/141‑1 (MQ=11)                                                               tATCTCAGATAAAAACAATTGAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGt                                                                             <  1:850512/141‑1 (MQ=11)                                                                 tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                                                           <  1:1002377/141‑1 (MQ=17)                                                                 tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTg                                                                           <  2:1021347/141‑1 (MQ=17)                                                                   tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTggg                                                                         <  1:425680/141‑1 (MQ=17)                                                                     aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                       >  2:59142/1‑141 (MQ=12)                                                                      gATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTc                                                                      >  2:3021/1‑141 (MQ=17)                                                                        aataCACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑aa                                                                   <  1:525318/140‑1 (MQ=11)                                                                         ataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATGCTCGAACTGTCTACCGTTGGGTTC‑AAg                                                                  <  1:1052910/141‑1 (MQ=11)                                                                          taAACAATTTAACAAGGCTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGa                                                                 <  1:475423/141‑1 (MQ=11)                                                                          taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTAGCGTTGGGTTC‑AAGa                                                                 <  2:722059/141‑1 (MQ=11)                                                                              cAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAatat                                                             >  2:981463/1‑141 (MQ=255)                                                                                aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGc                                                           >  1:584743/1‑141 (MQ=32)                                                                                aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGc                                                           >  1:304050/1‑141 (MQ=12)                                                                                 tttAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGcc                                                          <  2:575929/141‑1 (MQ=12)                                                                                 tctAACATGGCTGGTATTATTGTACCTGTTGTCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGATCGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGcc                                                          <  2:264972/139‑1 (MQ=11)                                                                                   tAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGCTTTGTCTTTGTGTTC‑AAGAATATGcccc                                                        <  1:514447/141‑1 (MQ=11)                                                                                    aaCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCa                                                       >  1:809736/1‑141 (MQ=12)                                                                                     aCAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGcacaat                                                      >  2:1059799/1‑136 (MQ=12)                                                                                     aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTAATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCaaa                                                      >  1:135461/1‑141 (MQ=11)                                                                                      cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAAt                                                     >  1:881062/1‑141 (MQ=255)                                                                                      cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAAt                                                     >  2:556085/1‑141 (MQ=255)                                                                                      cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATCAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCacc                                                     >  2:788537/1‑139 (MQ=11)                                                                                       aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAAtt                                                    >  1:712207/1‑141 (MQ=12)                                                                                       aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAAtt                                                    >  2:172529/1‑141 (MQ=255)                                                                                          gATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTta                                                 >  2:881756/1‑141 (MQ=255)                                                                                            tGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTtata                                               <  1:329035/141‑1 (MQ=25)                                                                                              ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATc                                             <  2:539513/141‑1 (MQ=25)                                                                                              ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATc                                             >  2:134339/1‑141 (MQ=255)                                                                                               ttttaCTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTGTTGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCa                                            <  2:639107/137‑1 (MQ=11)                                                                                               tATCACTGTAGCTGTTGGCTACTATTTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCa                                            <  2:390662/141‑1 (MQ=25)                                                                                               tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGCTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCa                                            <  2:194413/141‑1 (MQ=25)                                                                                               tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCa                                            <  2:93893/141‑1 (MQ=35)                                                                                                 tCACTGTAGCTGTTGGCTACTATCTCAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCaaa                                          >  2:40421/1‑141 (MQ=21)                                                                                                 tCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCaaa                                          <  1:1019623/141‑1 (MQ=255)                                                                                                 tCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCaaa                                          <  2:450104/141‑1 (MQ=255)                                                                                                  cACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGGGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAAt                                         >  2:531002/1‑141 (MQ=25)                                                                                                    cTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAAttt                                       >  2:217474/1‑141 (MQ=255)                                                                                                      gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTgg                                     <  1:239284/141‑1 (MQ=25)                                                                                                      gTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTgg                                     <  2:673118/141‑1 (MQ=255)                                                                                                       tAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCTATTTTATATCAAATTTGga                                    <  1:634543/141‑1 (MQ=11)                                                                                                        aGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGgaa                                   >  2:851285/1‑141 (MQ=35)                                                                                                        aGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATCTTATATCAAATTTGgaa                                   >  1:598186/1‑141 (MQ=255)                                                                                                         gCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGTTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGgaag                                  <  1:943282/141‑1 (MQ=25)                                                                                                         gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGgaag                                  >  2:252049/1‑141 (MQ=255)                                                                                                         gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGgaag                                  >  2:473782/1‑141 (MQ=255)                                                                                                         gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCATTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGgaag                                  >  1:269984/1‑141 (MQ=255)                                                                                                               ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAg                            <  1:986500/141‑1 (MQ=35)                                                                                                               ggCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAg                            <  1:439777/141‑1 (MQ=255)                                                                                                                gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCTCAGATTA‑GCCCCACTTTTATATCAAATTTGGAAGAAAAAGc                           >  1:550394/1‑141 (MQ=11)                                                                                                                gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTAATATCAAATTTGGAAGAAAAAGc                           >  1:199121/1‑141 (MQ=25)                                                                                                                 ctactaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACTATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCa                          >  1:505426/1‑141 (MQ=255)                                                                                                                  tactaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATGCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAt                         <  2:433842/141‑1 (MQ=255)                                                                                                                  tactaTCGAAAATATGGATTGGGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAt                         <  2:919351/141‑1 (MQ=11)                                                                                                                        cTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑aaaaaa                  <  2:82155/141‑2 (MQ=255)                                                                                                                           aGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑aaaaaagct               <  2:15380/141‑5 (MQ=17)                                                                                                                            gATCTGCATTGAGCTATCCTGCTATATCTTAAATATTAAGAGCACGTGGTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑aaaaaagctt              <  1:219792/141‑6 (MQ=11)                                                                                                                             atatGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑aaaaaagctta             <  2:280888/141‑7 (MQ=11)                                                                                                                              tatGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑aaaaaagcttat            <  1:857522/141‑8 (MQ=1)                                                                                                                                    ttGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑AAAAAGCTAATTACAAAt      >  1:968964/1‑141 (MQ=39)                                                                                                                                     tGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATATTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTAATTACAAAt      >  1:924261/1‑141 (MQ=0)                                                                                                                                         |                                                                                                                                             AGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTC‑AAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCAT‑AAAAAGCTAATTACAAATGGCG  >  CP000730/76158‑76434 | 
| Alignment Legend | 
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG | 
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑ |