Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 195,286 T→A 87.1% intergenic (‑97/‑82) USA300HOU_0183 ← / → USA300HOU_0184 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730195,2860TA87.1% 252.6 / 31.6 93intergenic (‑97/‑82)USA300HOU_0183/USA300HOU_0184hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (10/2);  new base A (40/41);  total (50/43)
Fisher's exact test for biased strand distribution p-value = 3.28e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.45e-02

TAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAA  >  CP000730/195156‑195417
                                                                                                                                    |                                                                                                                                   
tAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAatat                                                                                                                           <  2:418142/141‑1 (MQ=255)
tAGCTAAACTTGCTACGACAAATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAatat                                                                                                                           <  1:706214/141‑1 (MQ=255)
  gcaaaaCTTGCTACGAAAGATTCTTTATCCATAATGATAGCCCCCTAAA‑‑TTTATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAATATCtt                                                                                                                        <  1:522573/138‑1 (MQ=255)
  gCTAAACTTGCTACGAACGATACTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCt                                                                                                                         >  2:912753/1‑141 (MQ=255)
   cTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATC‑‑AATTAGTTGATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCtt                                                                                                                        <  1:993803/141‑1 (MQ=255)
   cTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCtt                                                                                                                        <  1:521741/141‑1 (MQ=255)
     aaaCTTGGTACGACAGATTCTTTATCAATAATGATAGCTACCTATT‑‑TTTATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATTTTTTACAGTATTTTATAAAAAAAAAAAAAAAAATATCTTaa                                                                                                                      <  2:335835/141‑1 (MQ=255)
      aaCTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAat                                                                                                                     >  1:973468/1‑141 (MQ=255)
        cTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTActat                                                                                                                   <  1:483222/141‑1 (MQ=255)
         ttGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTAAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATATTAATATc                                                                                                                  >  2:292218/1‑141 (MQ=255)
         ttGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑GAAATGTTTCTTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATc                                                                                                                  >  1:250706/1‑141 (MQ=255)
            cTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATCTATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATGTATTTTAGAGACTTTTTTCTAAATATTAAAAAAAATATCTTAATATcc                                                                                                                 >  2:222042/1‑141 (MQ=255)
            cTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATTTTAATATCCtt                                                                                                               >  2:855261/1‑141 (MQ=255)
            cTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCtt                                                                                                               >  1:611249/1‑141 (MQ=255)
             tACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTg                                                                                                              >  2:365232/1‑141 (MQ=255)
                 aCAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAAt                                                                                                          >  2:851027/1‑141 (MQ=255)
                     aTTCTTTATCCATTATAATAGCCTCCTATA‑‑TTTATGTCTACTTACTTATACCCTAACATGATTTTTATACTCTTTCAAAATATATTTTACATAATTTTATCTAAATAATAACAACAATATCTTAATATACTTGTAATCCGa                                                                                                      <  2:1052204/141‑1 (MQ=255)
                       tCTGTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATa                                                                                                    <  2:618474/141‑1 (MQ=255)
                            ctCCATAATGATAGCCCCCTATA‑‑TATATGTTTTTTTACTTATACCCTAACATGCTTTTTATAGTTTTTGAAAATATATTTTAAAGAATTTTATCTAAATATTAAAAAAAATATATTCATCTCCTTGTAATCCGATaaatat                                                                                               >  2:314067/2‑137 (MQ=255)
                            aTCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAAt                                                                                               >  2:805705/1‑141 (MQ=255)
                            aTCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATCTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCATTGTAATCCGATAAGAAt                                                                                               >  2:530121/1‑141 (MQ=255)
                             tCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTATAATCCGATAAGAAtt                                                                                              <  1:529767/141‑1 (MQ=255)
                                 tAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCTTTGTAATCCGATAAGAATTATAg                                                                                          >  2:317579/1‑141 (MQ=255)
                                  aatcatatccaattata‑‑tataTGTTTATTTACTTATACCCTAACATTATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGt                                                                                         <  2:570385/128‑1 (MQ=255)
                                    tGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTaa                                                                                       >  2:208063/1‑141 (MQ=255)
                                     gATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTTTAATCCGATAAGAATTATAGTAat                                                                                      >  2:78354/1‑141 (MQ=255)
                                     gATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAat                                                                                      >  2:552750/1‑141 (MQ=255)
                                     gATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAat                                                                                      >  2:248392/1‑141 (MQ=255)
                                      atatcgcccTATA‑‑CATCTGTTTATTTCCTTATACCCTGACATGATTTTTATCCCCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAata                                                                                     <  1:796979/135‑1 (MQ=255)
                                      aaatccctcTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTAATTCTCTTTGAAAATTTATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAata                                                                                     <  2:842772/137‑1 (MQ=255)
                                      aTAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAata                                                                                     >  2:942798/1‑141 (MQ=255)
                                      aTAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATAATAGTAata                                                                                     >  2:473528/1‑141 (MQ=255)
                                          cccccTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAATAATAtttt                                                                                 >  2:332395/1‑141 (MQ=255)
                                              cgata‑‑tatatGTTTATTTACTTATACCATAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCa                                                                             <  1:302726/139‑1 (MQ=255)
                                                ata‑‑tatatGATTATTTACTTGTAACCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAAc                                                                           <  2:143292/141‑1 (MQ=255)
                                                     tatatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCAt                                                                        >  1:293148/1‑141 (MQ=255)
                                                      atatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCAtt                                                                       >  1:151621/1‑141 (MQ=255)
                                                       tttgtgttttaccTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTTTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTg                                                                      <  2:312946/129‑1 (MQ=255)
                                                       tatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTg                                                                      >  1:276690/1‑141 (MQ=255)
                                                          gTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTta                                                                   <  1:1050092/141‑1 (MQ=255)
                                                           tttatttaCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTtat                                                                  <  1:552750/141‑1 (MQ=255)
                                                             tatttaCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCAtcatcacaa                                                                >  2:411604/1‑133 (MQ=255)
                                                              ctttaCTTATACCATTAAATGATTTTTATACTCGTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATagg                                                               <  2:645690/140‑1 (MQ=255)
                                                               tttaCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATagga                                                              <  1:910544/141‑1 (MQ=255)
                                                               tttaCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTCTTCAACCATTGTTATagga                                                              <  1:634965/141‑1 (MQ=255)
                                                                 taCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATaggagg                                                            <  2:923814/141‑1 (MQ=255)
                                                                 taCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATaggagg                                                            <  1:365232/141‑1 (MQ=255)
                                                                 taCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTGTTTCAACCATTGTTATaggagg                                                            <  2:776325/141‑1 (MQ=255)
                                                                  aCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTTTATCATTGTTATAGGAGGt                                                           >  2:546688/1‑141 (MQ=255)
                                                                   cTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTCTCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAAGNTTTNTNCAACAATTGTtatggaatgtc                                                          >  1:614766/1‑133 (MQ=255)
                                                                    ttATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATAGTTATAGGAGGTCt                                                         <  1:693531/141‑1 (MQ=255)
                                                                      ataCCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTCTAGGAGGTGtta                                                       >  1:524665/1‑141 (MQ=255)
                                                                       taCCCTAACATGATTTTTATCCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCCTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCttat                                                      <  1:669490/141‑1 (MQ=255)
                                                                             aaCATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGa                                                >  1:656519/1‑141 (MQ=255)
                                                                               cATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGTTCTTATTAATGACa                                              >  1:191120/1‑141 (MQ=255)
                                                                                aTGATTTTTATCCTCTTTGAAAATATATTCTACCGACTTTTACCTAATGATTAAAAAAAATAACTAAAGATGCGGTTATCCCGACATCCGTTATATTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACat                                             <  1:509030/141‑1 (MQ=255)
                                                                                aTGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACat                                             <  2:186529/141‑1 (MQ=255)
                                                                                aTGATTTTTATACTCTTTGAAAATATATTTTACAGAATGTTATCTTAATATTAAATAAAATATCTTACTATCCTTGTAATCCGTTTAGTATTATAGTAATATTTTTTCAACCATTGTTATATGAGGTCTTATTAATGACat                                             <  2:773407/141‑1 (MQ=255)
                                                                                aTGATTTTTATACTCTTGGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCCTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACat                                             <  1:906977/141‑1 (MQ=255)
                                                                                 tGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACatt                                            <  1:466956/141‑1 (MQ=255)
                                                                                 tGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACatt                                            <  2:179798/141‑1 (MQ=255)
                                                                                   aTTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACattat                                          >  1:349727/1‑141 (MQ=255)
                                                                                   aTTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAAAAAAAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACattat                                          <  2:152318/141‑1 (MQ=255)
                                                                                     ttttATACTCTTTGAAAATATGTTGTACATAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTAttt                                        >  2:753393/1‑141 (MQ=255)
                                                                                     ttttATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATATTAATATCTTTGTAATATGAAAAGAATTATAGTAATATTATTTCAACCAATGGTATATGAGGTCTTATTAATGACATTAttt                                        >  2:883397/1‑141 (MQ=255)
                                                                                      tttATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTAtttt                                       >  2:813091/1‑141 (MQ=255)
                                                                                       ttATACTCTTTCAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAAACCGATAAGAATTATGATAATATTTTTTCAACCTTTGGTATAGGAGGTCTTATTAATGACATTAttttt                                      <  2:305246/141‑1 (MQ=255)
                                                                                        tataCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTtta                                     >  1:1054153/1‑141 (MQ=255)
                                                                                           aCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACTCTACTTATAGGAGGTCTTATTAATGACATTATTTttatta                                  >  1:989094/1‑141 (MQ=255)
                                                                                           aCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTGATAGGAGGTCTTATTAATGACATTATTTttatta                                  >  1:988979/1‑141 (MQ=255)
                                                                                           aCTCATTGAAAATATATTTTACAGAATGTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAGTGACATTATTTttatta                                  <  2:333558/141‑1 (MQ=255)
                                                                                             ttaatGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGa                                >  2:535535/5‑141 (MQ=255)
                                                                                                    aaaTATATTTTACAGAATTTTATCTAAATATTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACa                        >  1:186125/1‑141 (MQ=255)
                                                                                                     aaTATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAGCCATTGTTATAGGAGGTCCTGTTAATGACCTTATTTTTATTAGAAGCTAACa                        >  1:1018835/1‑141 (MQ=255)
                                                                                                     aaTATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACa                        >  1:705266/1‑141 (MQ=255)
                                                                                                     aaTATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTCTTAGGAGcgacca                        >  1:266405/1‑136 (MQ=255)
                                                                                                      atatatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACaa                       >  2:402246/1‑141 (MQ=255)
                                                                                                      atatatTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACaa                       >  2:563888/1‑141 (MQ=255)
                                                                                                      atatatTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCAGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACTTTATTTTTATTATACGATAACaa                       >  1:279717/1‑141 (MQ=255)
                                                                                                             ttACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAt                <  2:934313/141‑1 (MQ=255)
                                                                                                              tACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAtt               <  1:876295/141‑1 (MQ=255)
                                                                                                               aCAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAttt              <  1:968138/141‑1 (MQ=255)
                                                                                                               aCAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAttt              <  1:277165/141‑1 (MQ=255)
                                                                                                                cAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAtttt             >  1:716001/1‑141 (MQ=255)
                                                                                                                cAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCAAACAATCTTGAtttt             >  1:927975/1‑141 (MQ=255)
                                                                                                                  gAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGc           <  1:805705/141‑1 (MQ=255)
                                                                                                                   aaTTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTTATTTTGCa          >  2:816501/1‑141 (MQ=255)
                                                                                                                      tttATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCa       >  1:331548/1‑141 (MQ=255)
                                                                                                                       ttATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAAGATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTCACAATCTTGATTTTGCATCaa      <  1:546688/141‑1 (MQ=255)
                                                                                                                          tCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCTTCATCGa   >  2:218492/1‑141 (MQ=255)
                                                                                                                          tCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGa   >  1:936789/1‑141 (MQ=255)
                                                                                                                           cTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGCTAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGaa  <  2:539692/141‑1 (MQ=255)
                                                                                                                           atAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGaa  <  1:95990/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                   
TAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATA‑‑TATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAA  >  CP000730/195156‑195417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: