Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,279,705 G→A 100% intergenic (+1373/+6659) mtlD → / ← glmM mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,279,7050GA100.0% 330.9 / ‑6.5 111intergenic (+1373/+6659)mtlD/glmMmannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  major base A (50/56);  minor base C (2/1);  total (52/59)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 111 total aligned reads displayed.

TTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTG  >  CP000730/2279568‑2279840
                                                                                                                                         |                                                                                                                                       
ttGTGCCTTTATTTGTTGATTCTTCTTCTGGTTTACTATTTACATTTTTTTTTTTTGTGATACTGCGACCACCTGGATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtg                                                                                                                                      <  2:98160/141‑1 (MQ=255)
ttGTGCCGTTATTAGTTGATTCTTCTTCTGGTTTACTCGTTACATCGTTATTCCTTGTCGGACTGTTTTTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtg                                                                                                                                      <  2:985916/141‑1 (MQ=255)
ttGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtg                                                                                                                                      <  1:370203/141‑1 (MQ=255)
     ccGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTgttgtt                                                                                                                                 >  2:272013/1‑141 (MQ=255)
     ccGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTGTGTTGCTGCATCTACACTAAACCCGTCATTATTTGGCGGTTTATCAGTTGCATCATCAGTTGCTGATGTTACTgttgtt                                                                                                                                 >  1:460104/1‑141 (MQ=255)
       gTTATTAGTTGATTCTACTTCTGGTTTACTCGTTACTTCTGTAACCTGTGTCGGACTGTGTGTTGATGCATCTACACTAGAATTGTTCTTAGCTTGCGGTTTCTCATTTGCATCATCCGTTGCTGATGTTGCCgttgttcc                                                                                                                               <  2:1015003/141‑3 (MQ=255)
        tgtgacatcatttCTACTTCTGGTTTACTAGTTACATGATTAACACTCGTCGGTCTGTTTGTTGGTCCCGCTGTACTGCGCTTATGTATAGATCTTGGGTTATCATATGCATCCTCAGTTGCTTAGGTTCCTgttgttgta                                                                                                                              <  2:371319/130‑4 (MQ=255)
          tttagtttttttgtcTTCTGGTTTACTAGGTACATCGTTATCCATTGTCGGGCTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCAcc                                                                                                                            <  2:564814/127‑1 (MQ=255)
          attgGTTGATTCTACTTCTGGTTTACTTGTTTCATCGTTATCCTTTGACGTGTTTTTGGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCAcc                                                                                                                            <  1:241184/141‑1 (MQ=255)
          attaGTTGATTCTCCTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCAcc                                                                                                                            <  1:913602/141‑1 (MQ=255)
          attaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCAcc                                                                                                                            <  2:562315/141‑1 (MQ=255)
           ttaGTTGATTCTACTTCTGGTTTACTGGTTACATCGTTATCCATTGTCGAGCTGTTTGTTGATGCATCTACACTAGACTTGTTATTAGCTTGCGATTTCTCGTTAACCTCATAGGTTGCTGGTGTTCCGGTTTTTTCCCCt                                                                                                                           >  2:822019/1‑141 (MQ=255)
           ttaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTTTCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTAACCt                                                                                                                           >  1:235646/1‑141 (MQ=255)
           ttaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCCTTTGCATCATCAGTTGCTGATGTTCCTGTTGTTTCACCt                                                                                                                           >  2:376183/1‑141 (MQ=255)
            taGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACCGTTGTTTCACCTg                                                                                                                          <  2:516780/141‑1 (MQ=255)
             aGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGt                                                                                                                         >  2:809507/1‑141 (MQ=255)
              gTTGATTCTACTTCTTGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCCTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGtt                                                                                                                        <  1:707288/141‑1 (MQ=255)
              gTTGATTCTACTTCTGGTTAGCTAGTTACATCGTTATCCATTGTCGGACTGTTTATTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTACATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGtt                                                                                                                        >  1:688986/1‑141 (MQ=255)
               ttGATTCTACTTCTGGTTTACTAGTTACATCGTTCACCATTGGCTGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTg                                                                                                                       <  1:456038/141‑1 (MQ=255)
               ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTg                                                                                                                       <  2:945048/141‑1 (MQ=255)
                tGATTCTACTTCTGGTTTACTAGTTACATCGTTGTCTATTTTCGGACTGTTTGTTGAGGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGc                                                                                                                      <  1:816849/141‑1 (MQ=255)
                          tCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCGGCATCACta                                                                                                            >  2:182908/1‑141 (MQ=255)
                          tCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACta                                                                                                            >  2:8213/1‑141 (MQ=255)
                          tCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACta                                                                                                            >  1:266871/1‑141 (MQ=255)
                          tCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACta                                                                                                            <  2:106554/141‑1 (MQ=255)
                          tCTGGTTTACTAGTTACATCGTTATCCATTGTCCGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTAATCATTAGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACtt                                                                                                            >  2:700559/1‑140 (MQ=255)
                           cTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTGATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACtct                                                                                                           >  2:515646/1‑139 (MQ=255)
                           cTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGGTTATCATTTGCATCATCAGTTGCTGCTTTTACTGTTGTTTCACCTGTTGCCGCATCACtat                                                                                                           >  2:391937/1‑141 (MQ=255)
                           cTGGTTTACTAGTTACATCGTTATCAATTGTCGGACTGTTTGTTGATGCATCTACACTCGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTAACCTGTTGCCGCATAACtat                                                                                                           >  2:576810/1‑141 (MQ=255)
                                ttACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTAttt                                                                                                      <  1:486164/141‑1 (MQ=255)
                                ttACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTAttt                                                                                                      <  1:662939/141‑1 (MQ=255)
                                 tACTAGTTATATCGTCATCCTTTGGTTGTCTGTTTGTTGCTGCATCGATAGTAGAATTGTTCTTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTg                                                                                                     <  2:557746/141‑1 (MQ=255)
                                 tACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTg                                                                                                     <  1:167311/141‑1 (MQ=255)
                                 tACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTg                                                                                                     <  2:1021299/141‑1 (MQ=255)
                                  aCTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTgg                                                                                                    >  2:570492/1‑141 (MQ=255)
                                    tAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGACGCCTCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGGTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGgtg                                                                                                  <  1:615085/141‑1 (MQ=255)
                                       ttACATCGTTATCCATTGTCGGACAGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATGACTATTATTTGgtggtg                                                                                               >  1:675638/1‑141 (MQ=255)
                                        tccATCGTTATCCGTTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGtgttgt                                                                                              <  2:936752/139‑1 (MQ=255)
                                        tACGTCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGtgttgt                                                                                              <  1:629489/141‑1 (MQ=255)
                                        tACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCCGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGtgttgt                                                                                              <  1:92743/141‑1 (MQ=255)
                                        tACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGtgttgt                                                                                              <  1:843444/141‑1 (MQ=255)
                                        tACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGtgttgt                                                                                              >  2:110919/1‑141 (MQ=255)
                                              gTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGgaga                                                                                        <  2:970588/141‑1 (MQ=255)
                                               ttATCCATTGTCGGACTGTTTGTTGATGCATCTACCCTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCCGTTGCTGCTGTTACTGTTGTTTCACCTGTTGCCGCATTCCTATTATTTGGTGTTGTCGGAGaa                                                                                       >  2:255270/1‑141 (MQ=255)
                                                tATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTGTCATTTGCATCATCCGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAg                                                                                      >  2:59645/1‑141 (MQ=255)
                                                tATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAg                                                                                      >  2:661182/1‑141 (MQ=255)
                                                tATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAg                                                                                      >  1:830046/1‑141 (MQ=255)
                                                  tCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGTAGCg                                                                                    >  2:761796/1‑141 (MQ=255)
                                                  tCCATTGTCGGACTGCTTGTTGATGCATCTACACTCGAATTGTTATTAGCTTGCGGTTCATCATTTACATCATACGTTGCTGATGTTACTGTTTTTTCACCTGTTTCCGCATCACTATTATTTGCTGTTGTCGAAGCAGCg                                                                                    >  2:424923/1‑141 (MQ=255)
                                                   ccATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGt                                                                                   <  1:1001775/141‑1 (MQ=255)
                                                    cATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTc                                                                                  <  2:675388/141‑1 (MQ=255)
                                                     aTTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCt                                                                                 <  2:838021/141‑1 (MQ=255)
                                                      ttGTCGGACTGTTTGTTGATGCATCTGCACTGGAATTGTTATTAGCTTGTGGTTTTTCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTg                                                                                <  2:708091/141‑1 (MQ=255)
                                                       tGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTGGGAGAAGCGTCGGc                                                                               >  1:119868/1‑141 (MQ=255)
                                                        gTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCt                                                                              <  1:713079/141‑1 (MQ=255)
                                                        gTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTGTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCt                                                                              >  1:708434/1‑141 (MQ=255)
                                                              ctctttgttGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCa                                                                        <  2:862249/138‑1 (MQ=255)
                                                                 tttgttGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTa                                                                     >  2:986138/1‑141 (MQ=255)
                                                                 tttgttGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTa                                                                     >  2:418158/1‑141 (MQ=255)
                                                                     ttgATTCATCTACATTAGTATTGTTATTAGCTTGCGGTTTATCCTTTGCATCATCAGTCGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTg                                                                 <  1:429722/141‑1 (MQ=255)
                                                                     ttgATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTg                                                                 <  1:49829/141‑1 (MQ=255)
                                                                       gATTCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtc                                                               <  2:225821/141‑1 (MQ=255)
                                                                       gATGCTTCTTCACTCTAATTGTTATTCGCTTTCGGTTTACCATTTGCATCATTAGGTGCTGATGTTTTTGTTTTTTCTCCTGTTGCCGCATCACTATTATTTGGTGTTTTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtc                                                               <  2:406359/141‑1 (MQ=255)
                                                                       gATGCATCTTCATTAGAATTGTGATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGTTGATGTTATTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtc                                                               <  2:314174/141‑1 (MQ=255)
                                                                       gATGCATCTACACTATAATTGTTATTGGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtc                                                               <  2:921195/141‑1 (MQ=255)
                                                                         tGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGTCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtcgt                                                             >  2:535879/1‑141 (MQ=255)
                                                                         tGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTCGCATTGGCTgtagt                                                             >  2:905841/1‑141 (MQ=255)
                                                                                acacTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTAGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGAt                                                      >  2:790843/1‑141 (MQ=255)
                                                                                   cTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACg                                                   <  2:679333/141‑1 (MQ=255)
                                                                                    tAGAATTTTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGt                                                  <  2:247526/141‑1 (MQ=255)
                                                                                      aaaTTGTTATTAGCTTGCGGTTTATCATTTGGCTCATCAGGTGCTGATGTTACTGTTGTTTCACCTGTTGCCTCATCACTTTTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTa                                                <  2:17338/140‑1 (MQ=255)
                                                                                         ttGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTAGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGt                                             >  1:990104/1‑141 (MQ=255)
                                                                                             tattaGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTc                                         >  1:984060/1‑141 (MQ=255)
                                                                                               ttaGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCTCCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGACGTCTCAGATACGTTAGGTTGTCCa                                       <  1:531607/141‑1 (MQ=255)
                                                                                                taGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGTGTCTGCATTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAg                                      <  2:688986/141‑1 (MQ=255)
                                                                                                taGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAg                                      >  2:915770/1‑141 (MQ=255)
                                                                                                    ttGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAtt                                  >  2:1054590/1‑141 (MQ=255)
                                                                                                     tGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCCGTAttt                                 >  1:211854/1‑141 (MQ=255)
                                                                                                     tGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAttt                                 <  2:480624/141‑1 (MQ=255)
                                                                                                     tGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAttt                                 >  2:18138/1‑141 (MQ=255)
                                                                                                      gCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAtttt                                >  2:1058393/1‑141 (MQ=255)
                                                                                                         gTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGCTACGTTCGGTTGTACAGTATTTTCTg                             <  2:1052086/141‑1 (MQ=255)
                                                                                                          tttCTCATTTGCATCGTCAGTTGCTGATGTTACTGTTGTTTCCCCTGTTGCCGCATCCCTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTCTCGTCTCAGGTACGTCAGGCTGTCCAGTATTTTCggg                            >  2:358988/1‑141 (MQ=255)
                                                                                                          tttATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGACGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAttttttcg                            >  2:788890/1‑137 (MQ=255)
                                                                                                          tttATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTCTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTCGGTTGTCCAGGATGTTCTgg                            >  2:67320/1‑141 (MQ=255)
                                                                                                           ttATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGgt                           >  2:658541/1‑141 (MQ=255)
                                                                                                             aTCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTACACATGTCGCCGCATCACTATTCTTTGGTGTTATCGGAGACGCGGCTGCTTTGCCAGTAGCTGTCGTCTCCGATACGTTAGGTTGTCCGGTCTTTCCTGgtgt                         >  2:815616/1‑141 (MQ=255)
                                                                                                                aTTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGc                      <  1:640803/141‑1 (MQ=255)
                                                                                                                     catcatCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTACCTGTCGTCTCACATACGTTAGGTTGTCAAGTATTTTCTGTTGTTGCATTAg                 >  1:664048/1‑141 (MQ=255)
                                                                                                                      atcatcAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGc                >  1:53193/1‑141 (MQ=255)
                                                                                                                      atcatcAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGc                >  2:190264/1‑141 (MQ=255)
                                                                                                                       tcatcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCCTCACTATTATTTGGTGTTGTCGGAGCAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATCCGTTCGGTTGTCCAGCCCTCTCTGGTGCTGCACTAGcc               >  2:284897/1‑140 (MQ=255)
                                                                                                                       tcatcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGct               >  2:1030289/1‑140 (MQ=255)
                                                                                                                         atcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCAtt             >  1:797790/1‑141 (MQ=255)
                                                                                                                         atcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGCTTGTCCAGTATTTTCTGGTGTTGCATTAGCAtt             >  2:593831/1‑141 (MQ=255)
                                                                                                                          tcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCCGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCAttt            <  1:706386/141‑1 (MQ=255)
                                                                                                                             gTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTCGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGGATTTTCTGGTGTTGCATTAGCATTTGat         >  2:616145/1‑140 (MQ=255)
                                                                                                                                gCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAAttt      <  1:110919/141‑1 (MQ=255)
                                                                                                                                  tGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGc    <  1:835333/141‑1 (MQ=255)
                                                                                                                                    aTGTTACTGATGTATCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTg  <  1:135816/141‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACCTGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTG  >  CP000730/2279568‑2279840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: